Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc160.27 Carica papaya HOM05D004812 ORTHO05D005721 2.6e-124 448.7 227 100.0
Cfa013725 Carpinus fangiana HOM05D004812 ORTHO05D005721 3.0e-96 355.5 226 80.1
Atru.chr13.882 Acer truncatum HOM05D004812 ORTHO05D005721 2.5e-95 352.4 220 80.9
CiPaw.07G171000 Carya illinoinensis HOM05D004812 ORTHO05D005721 2.5e-95 352.4 236 77.1
Haze_22372 Corylus avellana HOM05D004812 ORTHO05D005721 1.6e-94 349.7 226 78.8
QL09p016104 Quercus lobata HOM05D004812 ORTHO05D005721 2.8e-94 349.0 222 79.7
Prupe.1G418000 Prunus persica HOM05D004812 ORTHO05D005721 4.4e-92 341.7 224 78.6
TAR381G1267 Trochodendron aralioides HOM05D004812 ORTHO05D005721 1.3e-91 340.1 220 79.1
Gorai.009G222500 Gossypium raimondii HOM05D004812 ORTHO05D005721 8.4e-91 337.4 213 80.3
CSS0032884 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 1.2e-89 333.6 219 78.1
Thecc.08G083100 Theobroma cacao HOM05D004812 ORTHO05D005721 7.8e-89 330.9 218 78.9
Dinv44924 Davidia involucrata HOM05D004812 ORTHO05D005721 1.3e-88 330.1 213 78.4
Gohir.A05G212600 Gossypium hirsutum HOM05D004812 ORTHO05D005721 1.3e-88 330.1 213 78.4
CiPaw.08G053200 Carya illinoinensis HOM05D004812 ORTHO05D005721 5.1e-88 328.2 219 78.5
Potri.005G146600 Populus trichocarpa HOM05D004812 ORTHO05D005721 9.6e-87 323.9 214 76.2
Nn6g34543 Nelumbo nucifera HOM05D004812 ORTHO05D005721 2.8e-86 322.4 218 75.7
Cc10_g07760 Coffea canephora HOM05D004812 ORTHO05D005721 8.1e-86 320.9 215 75.3
Manes.05G184100 Manihot esculenta HOM05D004812 ORTHO05D005721 1.1e-85 320.5 227 74.0
Lj1g0006267 Lotus japonicus HOM05D004812 ORTHO05D005721 3.1e-85 318.9 219 72.6
MBI16_g36640_MAGBIO Magnolia biondii HOM05D004812 ORTHO05D005721 3.1e-85 318.9 218 75.7
Gohir.A06G026800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 9.0e-85 317.4 215 75.8
Glyma.04G048400 Glycine max HOM05D004812 ORTHO05D005721 1.2e-84 317.0 212 74.5
ClCG08G016760 Citrullus lanatus HOM05D004812 ORTHO05D005721 1.5e-84 316.6 225 74.2
Duzib041G0236 Durio zibethinus HOM05D004812 ORTHO05D005721 3.4e-84 315.5 222 75.2
Gohir.D06G024100 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.4e-84 315.5 215 75.3
Gorai.010G028600 Gossypium raimondii HOM05D004812 ORTHO05D005721 3.4e-84 315.5 215 75.3
Duzib041G0573 Durio zibethinus HOM05D004812 ORTHO05D005721 4.5e-84 315.1 221 74.7
THA.LOC104799834 Tarenaya hassleriana HOM05D004812 ORTHO05D005721 5.8e-84 314.7 220 74.1
MSTRG.25014 Avicennia marina HOM05D004812 ORTHO05D005721 9.9e-84 313.9 221 73.8
Hma1.2p1_1230F.1_g268750 Hydrangea macrophylla HOM05D004812 ORTHO05D005721 9.9e-84 313.9 221 73.3
VMungo1309G0464 Vigna mungo HOM05D004812 ORTHO05D005721 2.9e-83 312.4 217 73.3
Lalb_Chr23g0267661 Lupinus albus HOM05D004812 ORTHO05D005721 1.1e-82 310.5 224 71.9
Duzib093G1850 Durio zibethinus HOM05D004812 ORTHO05D005721 1.4e-82 310.1 216 75.0
Sabra02G0090600 Salix brachista HOM05D004812 ORTHO05D005721 1.4e-82 310.1 217 73.3
TWI36G1081 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 1.9e-82 309.7 219 74.4
Ciclev10002309m.g Citrus clementina HOM05D004812 ORTHO05D005721 4.2e-82 308.5 224 71.0
Peaxi162Scf01161g00329 Petunia axillaris HOM05D004812 ORTHO05D005721 4.2e-82 308.5 214 73.8
MELO3C010780.2 Cucumis melo HOM05D004812 ORTHO05D005721 5.4e-82 308.1 227 71.8
arahy.Tifrunner.gnm1.ann1.4PX4MG Arachis hypogaea HOM05D004812 ORTHO05D005721 7.1e-82 307.8 232 69.0
CsaV3_2G025860 Cucumis sativus L. HOM05D004812 ORTHO05D005721 2.1e-81 306.2 219 73.1
Glyma.06G049600 Glycine max HOM05D004812 ORTHO05D005721 2.1e-81 306.2 217 72.4
Sed0005944 Sechium edule HOM05D004812 ORTHO05D005721 2.7e-81 305.8 225 72.4
Eucgr.F00104 Eucalyptus grandis HOM05D004812 ORTHO05D005721 6.0e-81 304.7 217 72.4
Thhalv10028923m.g Eutrema salsugineum HOM05D004812 ORTHO05D005721 1.3e-80 303.5 221 69.7
Sp6g10230 Schrenkiella parvula HOM05D004812 ORTHO05D005721 1.3e-80 303.5 224 68.3
Aa31sc619G20 Aethionema arabicum HOM05D004812 ORTHO05D005721 2.3e-80 302.8 219 71.2
Aqoxy6G02958 Aquilegia oxysepala HOM05D004812 ORTHO05D005721 3.9e-80 302.0 223 70.9
arahy.Tifrunner.gnm1.ann1.HYM163 Arachis hypogaea HOM05D004812 ORTHO05D005721 3.9e-80 302.0 219 71.7
GSVIVG01009286001 Vitis vinifera HOM05D004812 ORTHO05D005721 3.9e-80 302.0 225 72.4
Eucgr.F02213 Eucalyptus grandis HOM05D004812 ORTHO05D005721 6.7e-80 301.2 214 72.0
FAN15G0694 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.7e-80 301.2 230 69.6
arahy.Tifrunner.gnm1.ann1.PWJU0J Arachis hypogaea HOM05D004812 ORTHO05D005721 1.5e-79 300.1 219 71.7
AL6G41350 Arabidopsis lyrata HOM05D004812 ORTHO05D005721 1.9e-79 299.7 218 70.6
Actinidia19286 Actinidia chinensis HOM05D004812 ORTHO05D005721 2.5e-79 299.3 218 72.5
MSTRG.923 Avicennia marina HOM05D004812 ORTHO05D005721 3.3e-79 298.9 214 73.8
MD08G1076700 Malus domestica HOM05D004812 ORTHO05D005721 3.3e-79 298.9 222 70.3
FvH4_2g32490 Fragaria vesca HOM05D004812 ORTHO05D005721 4.3e-79 298.5 223 70.4
C03p33720 Brassica napus HOM05D004812 ORTHO05D005721 9.6e-79 297.4 222 68.5
BcaC01g04783 Brassica carinata HOM05D004812 ORTHO05D005721 4.8e-78 295.0 222 68.0
Lsat_1_v5_gn_9_79341 Lactuca sativa HOM05D004812 ORTHO05D005721 8.1e-78 294.3 223 67.7
Migut.N02802 Erythranthe guttata HOM05D004812 ORTHO05D005721 1.1e-77 293.9 214 71.0
CAN.G416.6 Capsicum annuum HOM05D004812 ORTHO05D005721 1.4e-77 293.5 217 69.6
Rhsim07G0216800 Rhododendron simsii HOM05D004812 ORTHO05D005721 1.8e-77 293.1 329 53.5
BcaB01g02879 Brassica carinata HOM05D004812 ORTHO05D005721 2.4e-77 292.7 219 68.0
Ca_15883_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 3.1e-77 292.4 214 68.2
Gohir.D05G215800 Gossypium hirsutum HOM05D004812 ORTHO05D005721 3.1e-77 292.4 189 76.7
MD15G1064000 Malus domestica HOM05D004812 ORTHO05D005721 3.1e-77 292.4 218 69.3
Lj4A77G54 Lonicera japonica HOM05D004812 ORTHO05D005721 6.9e-77 291.2 234 68.4
Solyc04g077430.4 Solanum lycopersicum HOM05D004812 ORTHO05D005721 9.0e-77 290.8 217 68.2
Sopen04g031020 Solanum pennellii HOM05D004812 ORTHO05D005721 2.6e-76 289.3 217 67.7
Dinv39198 Davidia involucrata HOM05D004812 ORTHO05D005721 4.5e-76 288.5 180 80.6
Nitab4.5_0001494g0140 Nicotiana tabacum HOM05D004812 ORTHO05D005721 4.5e-76 288.5 220 67.3
TWI56G0383 Tripterygium wilfordii HOM05D004812 ORTHO05D005721 4.5e-76 288.5 224 70.5
PGR031G3368 Punica granatum HOM05D004812 ORTHO05D005721 5.8e-76 288.1 213 70.4
Potri.002G114600 Populus trichocarpa HOM05D004812 ORTHO05D005721 3.8e-75 285.4 214 71.0
RcHm_v2.0_Chr6g0310161 Rosa chinensis HOM05D004812 ORTHO05D005721 3.8e-75 285.4 224 67.0
Glyma.14G090500 Glycine max HOM05D004812 ORTHO05D005721 1.1e-74 283.9 223 68.2
CANSAT11G0724 Cannabis sativa HOM05D004812 ORTHO05D005721 5.5e-74 281.6 234 65.0
Actinidia29636 Actinidia chinensis HOM05D004812 ORTHO05D005721 6.0e-73 278.1 192 74.5
Psat5g042400 Pisum sativum HOM05D004812 ORTHO05D005721 1.8e-72 276.6 218 64.2
vmacro04604 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.8e-72 276.6 222 65.8
ECA232G4694 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.3e-72 276.2 211 68.2
Hund05266 Selenicereus undatus HOM05D004812 ORTHO05D005721 5.1e-72 275.0 226 66.4
Ca_06989_v3 Cicer arietinum L. HOM05D004812 ORTHO05D005721 6.7e-72 274.6 221 65.6
CARHR259230 Cardamine hirsuta HOM05D004812 ORTHO05D005721 1.1e-71 273.9 220 66.8
AT4G07990 Arabidopsis thaliana HOM05D004812 ORTHO05D005721 3.3e-71 272.3 217 66.8
Migut.C00441 Erythranthe guttata HOM05D004812 ORTHO05D005721 3.3e-71 272.3 214 65.9
TPR.G30200 Trifolium pratense HOM05D004812 ORTHO05D005721 3.3e-71 272.3 217 62.7
Carub.0006s2656 Capsella rubella HOM05D004812 ORTHO05D005721 4.8e-70 268.5 224 65.2
Ah.05g166930 Amaranthus hybridus HOM05D004812 ORTHO05D005721 6.2e-70 268.1 223 64.1
FAN20G0597 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.2e-70 268.1 206 68.0
FAN27G1358 Fragaria x ananassa HOM05D004812 ORTHO05D005721 6.2e-70 268.1 206 68.0
Psat6g018520 Pisum sativum HOM05D004812 ORTHO05D005721 8.2e-70 267.7 224 65.2
HanXRQChr04g0110461 Helianthus annuus HOM05D004812 ORTHO05D005721 1.1e-69 267.3 216 64.8
Lalb_Chr24g0399541 Lupinus albus HOM05D004812 ORTHO05D005721 1.1e-69 267.3 226 64.2
Medtr3g103530 Medicago truncatula HOM05D004812 ORTHO05D005721 1.1e-69 267.3 216 60.6
PSO541G3106 Papaver somniferum HOM05D004812 ORTHO05D005721 1.4e-69 266.9 217 65.0
FAN24G1448 Fragaria x ananassa HOM05D004812 ORTHO05D005721 1.2e-68 263.8 206 67.0
Medtr1g017260 Medicago truncatula HOM05D004812 ORTHO05D005721 2.6e-68 262.7 230 63.0
PSO675G4508 Papaver somniferum HOM05D004812 ORTHO05D005721 2.6e-68 262.7 217 64.1
Phvul.001G031700 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 3.4e-68 262.3 223 63.2
SGA_v2.0_scaffold238G43884 Striga asiatica HOM05D004812 ORTHO05D005721 3.4e-68 262.3 279 55.9
HanXRQChr08g0226381 Helianthus annuus HOM05D004812 ORTHO05D005721 1.7e-67 260.0 216 63.0
PGR083G2836 Punica granatum HOM05D004812 ORTHO05D005721 2.9e-67 259.2 216 62.5
Oeu048563.2 Olea europaea HOM05D004812 ORTHO05D005721 3.8e-67 258.8 219 62.1
Lj5g0016152 Lotus japonicus HOM05D004812 ORTHO05D005721 5.0e-67 258.5 222 64.0
EL10Ac1g02340 Beta vulgaris HOM05D004812 ORTHO05D005721 1.1e-66 257.3 222 64.0
Sabra05G0117000 Salix brachista HOM05D004812 ORTHO05D005721 1.4e-66 256.9 175 72.0
TPR.G13010 Trifolium pratense HOM05D004812 ORTHO05D005721 6.1e-65 251.5 221 61.1
Os03g0728100 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 6.7e-64 248.1 219 58.9
unitig_744.g24118 Utricularia gibba HOM05D004812 ORTHO05D005721 1.3e-62 243.8 217 62.7
CDE02G0400 Ceratophyllum demersum HOM05D004812 ORTHO05D005721 2.2e-62 243.0 218 58.3
Rhsim06G0065600 Rhododendron simsii HOM05D004812 ORTHO05D005721 8.2e-62 241.1 220 59.1
AUR62039348 Chenopodium quinoa HOM05D004812 ORTHO05D005721 1.1e-61 240.7 255 56.1
Nitab4.5_0024059g0010 Nicotiana tabacum HOM05D004812 ORTHO05D005721 1.8e-61 240.0 164 73.8
PGSC0003DMG400004945 Solanum tuberosum HOM05D004812 ORTHO05D005721 2.4e-61 239.6 175 68.6
Manes.18G050200 Manihot esculenta HOM05D004812 ORTHO05D005721 5.3e-61 238.4 182 69.8
Sc02g0008200 Simmondsia chinensis HOM05D004812 ORTHO05D005721 1.3e-59 233.8 163 71.8
COL.COLO4_28448 Corchorus olitorius HOM05D004812 ORTHO05D005721 8.5e-59 231.1 169 71.6
ATR0019G011 Amborella trichopoda HOM05D004812 ORTHO05D005721 3.0e-56 222.6 174 69.0
Zm00001eb215650 Zea mays HOM05D004812 ORTHO05D005721 2.5e-55 219.5 196 57.1
arahy.Tifrunner.gnm1.ann1.FJ07HR Arachis hypogaea HOM05D004812 ORTHO05D005721 8.2e-54 214.5 131 78.6
BolC3t15691H Brassica oleracea HOM05D004812 ORTHO05D005721 1.1e-53 214.2 168 64.9
A03p27930 Brassica napus HOM05D004812 ORTHO05D005721 4.1e-53 212.2 168 64.3
BraA03t12006Z Brassica rapa HOM05D004812 ORTHO05D005721 4.1e-53 212.2 168 64.3
Oeu038874.1 Olea europaea HOM05D004812 ORTHO05D005721 6.9e-53 211.5 145 72.4
Zm00001eb299310 Zea mays HOM05D004812 ORTHO05D005721 1.2e-52 210.7 206 56.8
Duzib041G0112 Durio zibethinus HOM05D004812 ORTHO05D005721 1.9e-50 203.4 133 76.7
VMungo0647G0241 Vigna mungo HOM05D004812 ORTHO05D005721 1.2e-49 200.7 372 39.0
Os07g0124800 Oryza sativa ssp. japonica HOM05D004812 ORTHO05D005721 1.1e-47 194.1 208 54.3
HPP92_028656 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.3e-46 190.7 193 57.5
vmacro21405 Vaccinium macrocarpon HOM05D004812 ORTHO05D005721 1.8e-45 186.8 178 59.0
ECA247G0897 Erigeron canadensis HOM05D004812 ORTHO05D005721 4.5e-44 182.2 173 56.1
CSS0043183 Camellia sinensis var. sinensis HOM05D004812 ORTHO05D005721 3.0e-40 169.5 182 54.4
Medtr3g103520 Medicago truncatula HOM05D004812 ORTHO05D005721 5.7e-39 165.2 216 46.3
AUR62034973 Chenopodium quinoa HOM05D004812 ORTHO05D005721 8.0e-33 144.8 298 39.3
Glyma.17G232245 Glycine max HOM05D004812 ORTHO05D005721 6.5e-27 125.2 117 61.5
Mapoly0153s0040 Marchantia polymorpha HOM05D004812 ORTHO05D005721 1.3e-22 110.9 248 35.5
Phvul.L001695 Phaseolus vulgaris HOM05D004812 ORTHO05D005721 2.3e-19 100.1 95 60.0
HanXRQChr08g0231951 Helianthus annuus HOM05D004812 ORTHO05D005721 1.1e-18 97.8 81 59.3
Glyma.14G121300 Glycine max HOM05D004812 ORTHO05D005721 7.2e-18 95.1 63 71.4
Mapoly0001s0190 Marchantia polymorpha HOM05D004812 ORTHO05D005721 7.2e-18 95.1 235 33.6
Pp3c17_7620 Physcomitrium patens HOM05D004812 ORTHO05D005721 8.9e-16 88.2 249 30.1
AagrBONN_evm.TU.Sc2ySwM_228.2797 Anthoceros agrestis HOM05D004812 ORTHO05D005721 2.6e-15 86.7 219 32.9
AagrBONN_evm.TU.Sc2ySwM_344.5440 Anthoceros agrestis HOM05D004812 ORTHO05D005721 3.4e-15 86.3 144 43.8
HPP92_011733 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.9e-14 82.4 59 66.1
SEGI_24355 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 1.4e-13 80.9 55 72.7
HPP92_011732 Vanilla planifolia HOM05D004812 ORTHO05D005721 1.2e-12 77.8 75 58.7
HPP92_017696 Vanilla planifolia HOM05D004812 ORTHO05D005721 4.6e-12 75.9 105 45.7
Duzib041G0506 Durio zibethinus HOM05D004812 ORTHO05D005721 2.3e-11 73.6 88 56.8
SEGI_07437 Sequoiadendron giganteum HOM05D004812 ORTHO05D005721 2.3e-11 73.6 87 48.3
Actinidia19589 Actinidia chinensis HOM05D004812 ORTHO05D005721 3.9e-11 72.8 54 66.7
SMO351G0516 Selaginella moellendorffii HOM05D004812 ORTHO05D005721 8.6e-11 71.6 164 36.0
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 2.3e-08 63.5 43 72.1
arahy.Tifrunner.gnm1.ann1.BXCF5W Arachis hypogaea HOM05D005011 ORTHO05D006443 8.3e-06 55.1 62 43.5
Lj1g0002210 Lotus japonicus HOM05D005011 ORTHO05D006443 8.3e-06 55.1 62 43.5


User provided reference genes

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