Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc16.134 Carica papaya HOM05D004591 ORTHO05D005749 2.2e-82 308.9 154 100.0
Duzib151G0997 Durio zibethinus HOM05D004591 ORTHO05D005749 5.0e-79 297.7 149 98.0
Hma1.2p1_0698F.1_g205415 Hydrangea macrophylla HOM05D004591 ORTHO05D005749 5.0e-79 297.7 149 98.0
Solyc01g067500.3 Solanum lycopersicum HOM05D004591 ORTHO05D005749 5.0e-79 297.7 149 98.0
Sopen01g029430 Solanum pennellii HOM05D004591 ORTHO05D005749 5.0e-79 297.7 149 98.0
Actinidia01943 Actinidia chinensis HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
CSS0009969 Camellia sinensis var. sinensis HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
Ciclev10005060m.g Citrus clementina HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
Gohir.A10G161800 Gossypium hirsutum HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
Gohir.D10G168300 Gossypium hirsutum HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
Gorai.011G187900 Gossypium raimondii HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
Nitab4.5_0000644g0140 Nicotiana tabacum HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
Peaxi162Scf00386g00533 Petunia axillaris HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
Thecc.04G279900 Theobroma cacao HOM05D004591 ORTHO05D005749 1.1e-78 296.6 149 97.3
Potri.008G215300 Populus trichocarpa HOM05D004591 ORTHO05D005749 1.5e-78 296.2 149 97.3
Potri.010G022300 Populus trichocarpa HOM05D004591 ORTHO05D005749 1.5e-78 296.2 149 97.3
CiPaw.02G085000 Carya illinoinensis HOM05D004591 ORTHO05D005749 1.9e-78 295.8 149 97.3
Duzib052G0124 Durio zibethinus HOM05D004591 ORTHO05D005749 2.5e-78 295.4 149 96.6
Dinv44407 Davidia involucrata HOM05D004591 ORTHO05D005749 3.2e-78 295.0 149 96.6
CAN.G580.3 Capsicum annuum HOM05D004591 ORTHO05D005749 4.2e-78 294.7 149 96.6
Dinv38310 Davidia involucrata HOM05D004591 ORTHO05D005749 4.2e-78 294.7 149 96.6
Psat4g047160 Pisum sativum HOM05D004591 ORTHO05D005749 4.2e-78 294.7 149 96.6
HanXRQChr03g0080861 Helianthus annuus HOM05D004591 ORTHO05D005749 5.5e-78 294.3 149 96.6
Hund20576 Selenicereus undatus HOM05D004591 ORTHO05D005749 7.2e-78 293.9 149 96.6
Lalb_Chr13g0303761 Lupinus albus HOM05D004591 ORTHO05D005749 9.4e-78 293.5 149 96.0
THA.LOC104818847 Tarenaya hassleriana HOM05D004591 ORTHO05D005749 9.4e-78 293.5 149 95.3
MD13G1171500 Malus domestica HOM05D004591 ORTHO05D005749 1.2e-77 293.1 149 96.6
MD16G1173200 Malus domestica HOM05D004591 ORTHO05D005749 1.2e-77 293.1 149 96.6
Manes.15G015000 Manihot esculenta HOM05D004591 ORTHO05D005749 1.2e-77 293.1 149 95.3
PGR004G2200 Punica granatum HOM05D004591 ORTHO05D005749 1.2e-77 293.1 149 96.0
Manes.03G192300 Manihot esculenta HOM05D004591 ORTHO05D005749 1.6e-77 292.7 149 96.0
TPR.G14635 Trifolium pratense HOM05D004591 ORTHO05D005749 1.6e-77 292.7 149 95.3
TAR365G0597 Trochodendron aralioides HOM05D004591 ORTHO05D005749 1.6e-77 292.7 149 95.3
GSVIVG01017781001 Vitis vinifera HOM05D004591 ORTHO05D005749 1.6e-77 292.7 149 96.0
Lj4g0005644 Lotus japonicus HOM05D004591 ORTHO05D005749 2.1e-77 292.4 149 96.0
Lj4g0023442 Lotus japonicus HOM05D004591 ORTHO05D005749 2.1e-77 292.4 149 96.0
vmacro08109 Vaccinium macrocarpon HOM05D004591 ORTHO05D005749 2.1e-77 292.4 149 96.0
Eucgr.H03866 Eucalyptus grandis HOM05D004591 ORTHO05D005749 2.7e-77 292.0 149 96.0
Sed0000507 Sechium edule HOM05D004591 ORTHO05D005749 2.7e-77 292.0 149 95.3
Atru.chr4.2787 Acer truncatum HOM05D004591 ORTHO05D005749 3.6e-77 291.6 149 96.0
Ca_21537_v3 Cicer arietinum L. HOM05D004591 ORTHO05D005749 3.6e-77 291.6 149 95.3
Phvul.003G102400 Phaseolus vulgaris HOM05D004591 ORTHO05D005749 3.6e-77 291.6 149 95.3
QL06p007990 Quercus lobata HOM05D004591 ORTHO05D005749 3.6e-77 291.6 154 94.8
TAR636G0963 Trochodendron aralioides HOM05D004591 ORTHO05D005749 3.6e-77 291.6 149 95.3
VMungo1215G2997 Vigna mungo HOM05D004591 ORTHO05D005749 3.6e-77 291.6 149 95.3
Haze_01244 Corylus avellana HOM05D004591 ORTHO05D005749 4.7e-77 291.2 155 94.2
Migut.N01937 Erythranthe guttata HOM05D004591 ORTHO05D005749 4.7e-77 291.2 148 97.3
Cc03_g02140 Coffea canephora HOM05D004591 ORTHO05D005749 6.1e-77 290.8 149 96.0
SGA_v2.0_scaffold43G16263 Striga asiatica HOM05D004591 ORTHO05D005749 6.1e-77 290.8 149 96.6
HPP92_016927 Vanilla planifolia HOM05D004591 ORTHO05D005749 6.1e-77 290.8 149 94.6
CANSAT78G2472 Cannabis sativa HOM05D004591 ORTHO05D005749 8.0e-77 290.4 149 94.6
Medtr4g119230 Medicago truncatula HOM05D004591 ORTHO05D005749 8.0e-77 290.4 149 95.3
Nn3g21355 Nelumbo nucifera HOM05D004591 ORTHO05D005749 8.0e-77 290.4 149 94.6
CDE12G0904 Ceratophyllum demersum HOM05D004591 ORTHO05D005749 1.0e-76 290.0 149 94.0
Lsat_1_v5_gn_5_52860 Lactuca sativa HOM05D004591 ORTHO05D005749 1.0e-76 290.0 149 95.3
MELO3C006623.2 Cucumis melo HOM05D004591 ORTHO05D005749 1.4e-76 289.7 149 94.0
CsaV3_3G014300 Cucumis sativus L. HOM05D004591 ORTHO05D005749 1.4e-76 289.7 149 94.0
RcHm_v2.0_Chr4g0421481 Rosa chinensis HOM05D004591 ORTHO05D005749 1.4e-76 289.7 149 95.3
CSS0050493 Camellia sinensis var. sinensis HOM05D004591 ORTHO05D005749 1.8e-76 289.3 156 92.9
Sabra08G0155500 Salix brachista HOM05D004591 ORTHO05D005749 1.8e-76 289.3 156 92.9
Aqoxy2G03072 Aquilegia oxysepala HOM05D004591 ORTHO05D005749 2.3e-76 288.9 149 93.3
EL10Ac3g06572 Beta vulgaris HOM05D004591 ORTHO05D005749 2.3e-76 288.9 149 95.3
ECA240G1474 Erigeron canadensis HOM05D004591 ORTHO05D005749 2.3e-76 288.9 149 96.0
AUR62043784 Chenopodium quinoa HOM05D004591 ORTHO05D005749 3.0e-76 288.5 154 92.9
AL6G29850 Arabidopsis lyrata HOM05D004591 ORTHO05D005749 4.0e-76 288.1 149 95.3
Carub.0006s1686 Capsella rubella HOM05D004591 ORTHO05D005749 4.0e-76 288.1 149 95.3
Glyma.07G250200 Glycine max HOM05D004591 ORTHO05D005749 5.2e-76 287.7 149 93.3
PSO210G4745 Papaver somniferum HOM05D004591 ORTHO05D005749 5.2e-76 287.7 149 94.0
AUR62041198 Chenopodium quinoa HOM05D004591 ORTHO05D005749 6.8e-76 287.3 149 94.6
Glyma.17G024200 Glycine max HOM05D004591 ORTHO05D005749 6.8e-76 287.3 149 92.6
unitig_578.g16759 Utricularia gibba HOM05D004591 ORTHO05D005749 6.8e-76 287.3 149 94.6
AT5G18580 Arabidopsis thaliana HOM05D004591 ORTHO05D005749 8.8e-76 287.0 149 94.6
Nn4g25961 Nelumbo nucifera HOM05D004591 ORTHO05D005749 8.8e-76 287.0 149 94.0
MBI18_g01976_MAGBIO Magnolia biondii HOM05D004591 ORTHO05D005749 1.2e-75 286.6 153 92.8
arahy.Tifrunner.gnm1.ann1.7AW5Q0 Arachis hypogaea HOM05D004591 ORTHO05D005749 2.0e-75 285.8 161 89.4
arahy.Tifrunner.gnm1.ann1.Q8N8UE Arachis hypogaea HOM05D004591 ORTHO05D005749 2.0e-75 285.8 161 89.4
ClCG05G005920 Citrullus lanatus HOM05D004591 ORTHO05D005749 2.0e-75 285.8 151 93.4
TWI09G1039 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 4.4e-75 284.6 149 92.6
TWI53G0054 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 9.8e-75 283.5 149 91.9
TWI53G1348 Tripterygium wilfordii HOM05D004591 ORTHO05D005749 9.8e-75 283.5 149 91.9
Thhalv10013373m.g Eutrema salsugineum HOM05D004591 ORTHO05D005749 1.3e-74 283.1 149 93.3
BcaB05g23341 Brassica carinata HOM05D004591 ORTHO05D005749 2.2e-74 282.3 149 93.3
BcaC03g13610 Brassica carinata HOM05D004591 ORTHO05D005749 2.2e-74 282.3 149 93.3
BcaB01g05264 Brassica carinata HOM05D004591 ORTHO05D005749 3.7e-74 281.6 149 92.6
C02p10040 Brassica napus HOM05D004591 ORTHO05D005749 4.8e-74 281.2 149 92.6
FvH4_4g17580 Fragaria vesca HOM05D004591 ORTHO05D005749 4.8e-74 281.2 149 92.6
MSTRG.28019 Avicennia marina HOM05D004591 ORTHO05D005749 6.3e-74 280.8 149 93.3
A02p05010 Brassica napus HOM05D004591 ORTHO05D005749 6.3e-74 280.8 149 92.6
SalBow3G4019 Salvia bowleyana HOM05D004591 ORTHO05D005749 6.3e-74 280.8 164 87.8
DCAR_002455 Daucus carota HOM05D004591 ORTHO05D005749 8.3e-74 280.4 149 91.3
DCAR_002457 Daucus carota HOM05D004591 ORTHO05D005749 8.3e-74 280.4 149 91.3
Sp6g25750 Schrenkiella parvula HOM05D004591 ORTHO05D005749 1.1e-73 280.0 149 91.9
CARHR194440 Cardamine hirsuta HOM05D004591 ORTHO05D005749 1.8e-73 279.3 149 91.9
Os05g0149800 Oryza sativa ssp. japonica HOM05D004591 ORTHO05D005749 2.4e-73 278.9 149 89.9
Oeu044779.2 Olea europaea HOM05D004591 ORTHO05D005749 3.1e-73 278.5 149 92.6
Ah.13g074560 Amaranthus hybridus HOM05D004591 ORTHO05D005749 5.4e-73 277.7 163 85.9
BolC2t06906H Brassica oleracea HOM05D004591 ORTHO05D005749 3.5e-72 275.0 157 88.5
A03p08950 Brassica napus HOM05D004591 ORTHO05D005749 1.0e-71 273.5 159 86.8
A10p20980 Brassica napus HOM05D004591 ORTHO05D005749 1.0e-71 273.5 149 88.6
BraA10t44163Z Brassica rapa HOM05D004591 ORTHO05D005749 1.0e-71 273.5 149 88.6
BraA02t05460Z Brassica rapa HOM05D004591 ORTHO05D005749 1.3e-71 273.1 158 87.3
BcaB08g36661 Brassica carinata HOM05D004591 ORTHO05D005749 2.2e-71 272.3 149 87.9
Oeu062899.1 Olea europaea HOM05D004591 ORTHO05D005749 1.1e-70 270.0 184 76.1
FAN07G0597 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.9e-70 269.2 168 82.1
BraA03t10221Z Brassica rapa HOM05D004591 ORTHO05D005749 3.2e-70 268.5 172 80.2
FAN17G1172 Fragaria x ananassa HOM05D004591 ORTHO05D005749 8.0e-69 263.8 154 87.0
Zm00001eb308510 Zea mays HOM05D004591 ORTHO05D005749 5.2e-68 261.2 141 89.4
ATR0706G153 Amborella trichopoda HOM05D004591 ORTHO05D005749 6.8e-68 260.8 142 88.0
HanXRQChr06g0174301 Helianthus annuus HOM05D004591 ORTHO05D005749 1.5e-67 259.6 149 82.6
SMO118G0294 Selaginella moellendorffii HOM05D004591 ORTHO05D005749 2.6e-67 258.8 149 81.2
FAN12G0549 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.3e-66 256.5 149 86.6
FAN12G3150 Fragaria x ananassa HOM05D004591 ORTHO05D005749 1.3e-66 256.5 149 86.6
C03p10420 Brassica napus HOM05D004591 ORTHO05D005749 4.9e-66 254.6 149 85.9
Rhsim04G0218600 Rhododendron simsii HOM05D004591 ORTHO05D005749 1.1e-65 253.4 237 60.3
BolC3t13524H Brassica oleracea HOM05D004591 ORTHO05D005749 5.4e-65 251.1 149 85.2
Mapoly0035s0147 Marchantia polymorpha HOM05D004591 ORTHO05D005749 7.0e-65 250.8 148 81.1
COL.COLO4_13908 Corchorus olitorius HOM05D004591 ORTHO05D005749 3.3e-62 241.9 117 99.1
Prupe.1G140000 Prunus persica HOM05D004591 ORTHO05D005749 2.1e-61 239.2 117 97.4
Pp3c6_6290 Physcomitrium patens HOM05D004591 ORTHO05D005749 3.6e-61 238.4 147 75.5
Sc25g0004740 Simmondsia chinensis HOM05D004591 ORTHO05D005749 1.0e-60 236.9 117 97.4
PSO832G1860 Papaver somniferum HOM05D004591 ORTHO05D005749 1.4e-60 236.5 121 95.0
AagrBONN_evm.TU.Sc2ySwM_228.5538 Anthoceros agrestis HOM05D004591 ORTHO05D005749 2.3e-60 235.7 148 75.0
Aa31LG11G11040 Aethionema arabicum HOM05D004591 ORTHO05D005749 3.0e-60 235.3 161 76.4
HanXRQChr12g0380821 Helianthus annuus HOM05D004591 ORTHO05D005749 1.7e-58 229.6 190 62.1
BcaC04g18665 Brassica carinata HOM05D004591 ORTHO05D005749 4.3e-54 214.9 149 73.8
BolC9t58658H Brassica oleracea HOM05D004591 ORTHO05D005749 4.3e-54 214.9 149 73.8
C09p57910 Brassica napus HOM05D004591 ORTHO05D005749 5.6e-54 214.5 148 74.3
Lsat_1_v5_gn_3_27301 Lactuca sativa HOM05D004591 ORTHO05D005749 2.8e-53 212.2 117 86.3
Zm00001eb418170 Zea mays HOM05D004591 ORTHO05D005749 6.1e-53 211.1 149 73.2
Zm00001eb354190 Zea mays HOM05D004591 ORTHO05D005749 1.6e-45 186.4 92 93.5
Zm00001eb083940 Zea mays HOM05D004591 ORTHO05D005749 6.2e-45 184.5 101 90.1
Lj3A813T31 Lonicera japonica HOM05D004591 ORTHO05D005749 6.0e-40 167.9 88 94.3
Manes.07G083301 Manihot esculenta HOM05D004591 ORTHO05D005749 1.7e-39 166.4 108 79.6
DCAR_002452 Daucus carota HOM05D004591 ORTHO05D005749 5.1e-39 164.9 138 63.8
CBR_g7999 Chara braunii HOM05D004591 ORTHO05D005749 3.2e-33 145.6 158 48.7
ECA246G1561 Erigeron canadensis HOM05D004591 ORTHO05D005749 1.5e-30 136.7 86 75.6
Actinidia40243 Actinidia chinensis HOM05D004591 ORTHO05D005749 2.4e-28 129.4 63 95.2
Psat4g047200 Pisum sativum HOM05D004591 ORTHO05D005749 1.5e-27 126.7 70 88.6
Nn1g02295 Nelumbo nucifera HOM05D004591 ORTHO05D005749 3.8e-26 122.1 63 92.1
PRCOL_00004048 Prasinoderma coloniale HOM05D004591 ORTHO05D005749 1.3e-15 87.0 161 29.8
Cre01.g047900 Chlamydomonas reinhardtii HOM05D004591 ORTHO05D005749 1.4e-12 77.0 151 31.1
Lsat_1_v5_gn_1_116641 Lactuca sativa HOM05D004591 ORTHO05D005749 8.7e-07 57.8 54 53.7


User provided reference genes

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