Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc16.104 Carica papaya HOM05D004181 ORTHO05D018525 5.6e-18 93.2 46 100.0
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 1.8e-16 88.2 46 91.3
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 2.3e-16 87.8 46 91.3
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 3.1e-16 87.4 46 91.3
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 3.1e-16 87.4 46 91.3
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 3.1e-16 87.4 46 91.3
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 3.1e-16 87.4 46 91.3
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 4.0e-16 87.0 46 89.1
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 4.0e-16 87.0 46 89.1
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 4.0e-16 87.0 46 89.1
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 4.0e-16 87.0 46 91.3
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 5.2e-16 86.7 46 89.1
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 6.8e-16 86.3 46 91.3
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 6.8e-16 86.3 46 91.3
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 6.8e-16 86.3 46 89.1
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 8.9e-16 85.9 46 89.1
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 8.9e-16 85.9 46 89.1
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 8.9e-16 85.9 46 87.0
Gohir.A02G045700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.5e-15 85.1 46 87.0
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 1.5e-15 85.1 46 87.0
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.5e-15 85.1 46 87.0
SGA_v2.0_scaffold89G27558 Striga asiatica HOM05D004181 ORTHO05D005610 1.5e-15 85.1 46 87.0
DCAR_024617 Daucus carota HOM05D004181 ORTHO05D005610 2.0e-15 84.7 46 87.0
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 2.0e-15 84.7 46 87.0
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 2.0e-15 84.7 46 87.0
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 2.0e-15 84.7 46 87.0
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 2.6e-15 84.3 46 89.1
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 3.4e-15 84.0 46 87.0
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 3.4e-15 84.0 46 87.0
COL.COLO4_13940 Corchorus olitorius HOM05D004181 ORTHO05D018525 3.4e-15 84.0 46 84.8
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 3.4e-15 84.0 46 87.0
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 3.4e-15 84.0 46 87.0
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 3.4e-15 84.0 46 87.0
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 3.4e-15 84.0 46 87.0
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 4.4e-15 83.6 46 84.8
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 4.4e-15 83.6 46 87.0
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 4.4e-15 83.6 46 87.0
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 5.8e-15 83.2 46 87.0
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 7.5e-15 82.8 46 82.6
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 7.5e-15 82.8 46 84.8
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 7.5e-15 82.8 46 84.8
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 7.5e-15 82.8 46 84.8
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 7.5e-15 82.8 46 84.8
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 9.9e-15 82.4 46 84.8
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 1.3e-14 82.0 46 84.8
arahy.Tifrunner.gnm1.ann1.EJR7TM Arachis hypogaea HOM05D004181 ORTHO05D018525 1.3e-14 82.0 46 84.8
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 1.3e-14 82.0 46 84.8
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 1.3e-14 82.0 46 82.6
ClCG05G005750 Citrullus lanatus HOM05D004181 ORTHO05D018525 1.7e-14 81.6 46 84.8
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 1.7e-14 81.6 46 84.8
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 1.7e-14 81.6 46 84.8
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 1.7e-14 81.6 46 84.8
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 1.7e-14 81.6 46 84.8
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 2.2e-14 81.3 46 82.6
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 2.2e-14 81.3 46 84.8
CDE12G0304 Ceratophyllum demersum HOM05D004181 ORTHO05D005610 2.2e-14 81.3 46 82.6
Lalb_Chr15g0087101 Lupinus albus HOM05D004181 ORTHO05D005610 2.2e-14 81.3 46 84.8
PGR004G0905 Punica granatum HOM05D004181 ORTHO05D005610 2.2e-14 81.3 46 82.6
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 2.2e-14 81.3 46 84.8
Nitab4.5_0000242g0080 Nicotiana tabacum HOM05D004181 ORTHO05D005610 2.9e-14 80.9 46 82.6
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 3.7e-14 80.5 46 82.6
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 3.7e-14 80.5 46 80.4
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 3.7e-14 80.5 46 82.6
SEGI_33678 Sequoiadendron giganteum HOM05D004181 ORTHO05D018525 3.7e-14 80.5 46 84.8
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 82.6
CBR_g38144 Chara braunii HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 82.6
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 82.6
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 82.6
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 82.6
Oeu026208.1 Olea europaea HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 82.6
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 80.4
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 84.8
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 4.9e-14 80.1 46 84.8
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 6.4e-14 79.7 46 82.6
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 6.4e-14 79.7 46 80.4
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 8.3e-14 79.3 46 78.3
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 8.3e-14 79.3 46 82.6
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 1.1e-13 79.0 46 82.6
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.1e-13 79.0 46 82.6
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.1e-13 79.0 46 82.6
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.1e-13 79.0 46 82.6
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.1e-13 79.0 46 82.6
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 1.1e-13 79.0 46 80.4
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 1.9e-13 78.2 46 82.6
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 2.4e-13 77.8 46 82.6
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 2.4e-13 77.8 46 78.3
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 3.2e-13 77.4 46 82.6
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 3.2e-13 77.4 46 82.6
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 3.2e-13 77.4 46 82.6
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 3.2e-13 77.4 46 82.6
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 3.2e-13 77.4 46 82.6
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 3.2e-13 77.4 46 82.6
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 4.1e-13 77.0 46 78.3
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 4.1e-13 77.0 46 76.1
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 5.4e-13 76.6 46 76.1
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 7.1e-13 76.3 46 80.4
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 7.1e-13 76.3 46 80.4
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 9.2e-13 75.9 46 80.4
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 9.2e-13 75.9 46 80.4
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 9.2e-13 75.9 46 80.4
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 9.2e-13 75.9 46 80.4
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 9.2e-13 75.9 46 80.4
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 9.2e-13 75.9 46 80.4
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 9.2e-13 75.9 46 80.4
SHI00294 Sapria himalayana HOM05D004181 ORTHO05D018525 9.2e-13 75.9 46 78.3
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 9.2e-13 75.9 46 76.1
Sc13g0003670 Simmondsia chinensis HOM05D004181 ORTHO05D005610 2.1e-12 74.7 46 76.1
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 2.7e-12 74.3 46 73.9
PRCOL_00001584 Prasinoderma coloniale HOM05D004181 ORTHO05D005610 4.6e-12 73.6 46 71.7
PGSC0003DMG400029187 Solanum tuberosum HOM05D004181 ORTHO05D018525 1.7e-11 71.6 46 76.1
MCO07G673 Micromonas commoda HOM05D004181 ORTHO05D005610 3.0e-11 70.9 46 69.6
Cre14.g612000 Chlamydomonas reinhardtii HOM05D004181 ORTHO05D005610 6.6e-11 69.7 46 71.7
PGSC0003DMG400029186 Solanum tuberosum HOM05D004181 ORTHO05D005610 5.6e-10 66.6 43 74.4
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 7.6e-07 56.2 30 93.3
Atru.chr4.2742 Acer truncatum HOM05D004181 ORTHO05D005610 4.9e-06 53.5 30 86.7
SalBow5G0241 Salvia bowleyana HOM05D004181 ORTHO05D005610 6.4e-06 53.1 30 86.7
SalBow5G5345 Salvia bowleyana HOM05D004181 ORTHO05D005610 6.4e-06 53.1 30 86.7


User provided reference genes

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