Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 9.8e-25 115.9 56 100.0
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.5e-20 101.3 54 85.2
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 2.5e-20 101.3 55 78.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 2.5e-20 101.3 55 80.0
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 3.3e-20 100.9 55 81.8
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 4.3e-20 100.5 55 78.2
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 4.3e-20 100.5 55 81.8
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.6e-20 100.1 55 80.0
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 5.6e-20 100.1 55 80.0
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 5.6e-20 100.1 55 80.0
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.6e-20 100.1 55 81.8
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 5.6e-20 100.1 55 81.8
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 9.5e-20 99.4 55 78.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 9.5e-20 99.4 55 78.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 9.5e-20 99.4 55 81.8
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.2e-19 99.0 55 78.2
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.2e-19 99.0 55 80.0
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.2e-19 99.0 55 80.0
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.2e-19 99.0 55 80.0
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.2e-19 99.0 55 78.2
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.6e-19 98.6 55 74.5
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 2.8e-19 97.8 55 78.2
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 2.8e-19 97.8 55 76.4
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 3.6e-19 97.4 55 72.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.6e-19 97.4 55 76.4
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 3.6e-19 97.4 55 78.2
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.6e-19 97.4 55 78.2
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.6e-19 97.4 55 78.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 3.6e-19 97.4 55 76.4
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 6.1e-19 96.7 55 76.4
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 8.0e-19 96.3 55 78.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.0e-18 95.9 55 72.7
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 1.4e-18 95.5 55 74.5
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.4e-18 95.5 62 71.0
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.4e-18 95.5 55 74.5
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.4e-18 95.5 55 76.4
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 1.8e-18 95.1 55 72.7
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.8e-18 95.1 54 77.8
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 2.3e-18 94.7 54 77.8
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.3e-18 94.7 55 80.0
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 4.0e-18 94.0 55 70.9
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 5.2e-18 93.6 55 67.3
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 5.2e-18 93.6 55 70.9
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 5.2e-18 93.6 55 70.9
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 6.8e-18 93.2 55 70.9
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 6.8e-18 93.2 55 69.1
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 6.8e-18 93.2 55 74.5
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 8.9e-18 92.8 55 67.3
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 8.9e-18 92.8 55 70.9
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 8.9e-18 92.8 55 70.9
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 1.2e-17 92.4 54 72.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.2e-17 92.4 55 78.2
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 1.5e-17 92.0 54 74.1
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 1.5e-17 92.0 54 74.1
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.5e-17 92.0 55 78.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 1.5e-17 92.0 55 69.1
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 2.0e-17 91.7 55 70.9
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 2.0e-17 91.7 55 67.3
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 2.0e-17 91.7 55 72.7
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.6e-17 91.3 55 72.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.6e-17 91.3 55 70.9
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.6e-17 91.3 54 74.1
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 2.6e-17 91.3 55 72.7
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 2.6e-17 91.3 55 72.7
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 2.6e-17 91.3 55 69.1
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 4.4e-17 90.5 54 74.1
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 4.4e-17 90.5 55 67.3
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 5.8e-17 90.1 54 72.2
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 5.8e-17 90.1 54 72.2
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 5.8e-17 90.1 54 72.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 5.8e-17 90.1 55 67.3
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 5.8e-17 90.1 55 63.6
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 7.5e-17 89.7 55 67.3
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 9.8e-17 89.4 54 72.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 9.8e-17 89.4 54 72.2
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 9.8e-17 89.4 55 65.5
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.3e-16 89.0 54 72.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.3e-16 89.0 55 69.1
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 1.3e-16 89.0 55 69.1
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 1.3e-16 89.0 55 65.5
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.2e-16 88.2 54 70.4
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 2.2e-16 88.2 54 70.4
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 2.2e-16 88.2 55 65.5
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 2.9e-16 87.8 55 67.3
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 2.9e-16 87.8 55 69.1
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 3.7e-16 87.4 54 70.4
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 3.7e-16 87.4 55 63.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 4.9e-16 87.0 55 65.5
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 4.9e-16 87.0 54 70.4
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 4.9e-16 87.0 54 70.4
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 4.9e-16 87.0 55 63.6
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 4.9e-16 87.0 55 65.5
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 6.4e-16 86.7 54 66.7
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 6.4e-16 86.7 55 63.6
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.1e-15 85.9 54 66.7
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 1.4e-15 85.5 54 66.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.4e-15 85.5 55 67.3
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 1.4e-15 85.5 55 63.6
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.2e-15 84.3 55 61.8
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 3.2e-15 84.3 55 60.0
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 4.1e-15 84.0 55 63.6
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 5.4e-15 83.6 55 60.0
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 7.0e-15 83.2 55 63.6
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.2e-14 82.4 58 69.0
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 3.5e-14 80.9 56 67.9
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 4.6e-14 80.5 55 60.0
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 4.6e-14 80.5 55 58.2
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 7.8e-14 79.7 55 54.5
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.3e-13 79.0 43 76.7
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 3.9e-13 77.4 46 60.9
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 5.0e-13 77.0 82 48.8
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 8.6e-13 76.3 55 63.6
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 1.1e-10 69.3 46 63.0
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.8e-10 68.6 55 50.9
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.1e-10 67.8 55 50.9
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.2e-09 65.9 40 57.5
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 1.2e-09 65.9 55 50.9
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 1.2e-09 65.9 55 50.9
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 7.5e-09 63.2 55 49.1
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 7.5e-09 63.2 55 52.7
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 4.9e-08 60.5 36 63.9
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 4.1e-07 57.4 55 38.2
Lsat_1_v5_gn_4_104380 Lactuca sativa HOM05D001722 ORTHO05D048310 7.0e-07 56.6 36 52.8
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 9.2e-07 56.2 33 63.6
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.6e-06 55.5 27 74.1
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.6e-06 55.5 31 67.7
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 4.6e-06 53.9 30 66.7


User provided reference genes

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