Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.7e-82 309.3 154 100.0
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 3.8e-79 298.1 150 98.0
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.2e-29 133.7 158 52.5
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 1.1e-28 130.6 157 49.7
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 1.4e-28 130.2 157 49.0
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 5.2e-28 128.3 152 47.4
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 1.2e-27 127.1 150 47.3
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.0e-27 126.3 160 48.8
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.3e-26 123.6 159 48.4
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.7e-26 123.2 154 46.8
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 2.2e-26 122.9 154 46.8
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 2.9e-26 122.5 160 48.1
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 3.8e-26 122.1 120 54.2
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 4.9e-26 121.7 140 47.9
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 4.9e-26 121.7 135 48.1
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 4.9e-26 121.7 154 46.1
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 6.4e-26 121.3 151 49.7
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.1e-25 120.6 156 46.8
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.4e-25 120.2 137 50.4
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 3.2e-25 119.0 158 45.6
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 7.1e-25 117.9 119 52.9
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 2.7e-24 115.9 156 42.9
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 6.0e-24 114.8 146 43.2
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 7.8e-24 114.4 119 49.6
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.0e-23 114.0 124 50.8
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.0e-23 114.0 124 50.8
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.0e-23 114.0 145 44.8
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.7e-23 113.2 132 45.5
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.3e-23 112.8 124 50.0
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 3.9e-23 112.1 137 46.7
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 5.1e-23 111.7 158 46.2
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 6.6e-23 111.3 123 51.2
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 1.5e-22 110.2 106 51.9
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 3.3e-22 109.0 139 43.2
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 4.3e-22 108.6 139 46.8
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 7.3e-22 107.8 159 42.8
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 4.8e-21 105.1 142 45.1
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 6.2e-21 104.8 154 42.9
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 1.4e-20 103.6 98 54.1
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 1.8e-20 103.2 108 49.1
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 3.1e-20 102.4 155 41.9
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 4.0e-20 102.1 156 42.3
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 5.3e-20 101.7 143 41.3
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 5.3e-20 101.7 156 42.9
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 9.0e-20 100.9 143 43.4
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 1.2e-19 100.5 150 41.3
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.2e-19 100.5 121 46.3
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 1.2e-19 100.5 143 40.6
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 1.5e-19 100.1 153 41.8
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 1.5e-19 100.1 139 46.0
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 1.5e-19 100.1 150 38.0
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 3.4e-19 99.0 133 43.6
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 4.4e-19 98.6 120 45.8
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 7.6e-19 97.8 98 54.1
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 7.6e-19 97.8 120 46.7
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 1.7e-18 96.7 148 41.2
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 1.7e-18 96.7 92 55.4
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 2.2e-18 96.3 160 41.2
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 2.2e-18 96.3 156 41.0
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 4.9e-18 95.1 146 41.8
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 1.1e-17 94.0 156 42.3
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 1.4e-17 93.6 119 45.4
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.4e-17 92.8 140 38.6
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 2.4e-17 92.8 118 45.8
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 4.2e-17 92.0 121 44.6
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 4.2e-17 92.0 150 39.3
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 5.4e-17 91.7 96 51.0
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 2.1e-16 89.7 126 42.1
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.1e-16 89.7 150 39.3
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 2.7e-16 89.4 157 41.4
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.0e-15 87.4 142 42.3
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 1.0e-15 87.4 139 41.7
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 3.0e-15 85.9 134 41.8
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 5.1e-15 85.1 151 37.1
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 6.6e-15 84.7 150 37.3
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 8.7e-15 84.3 111 45.9
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 1.1e-14 84.0 137 40.1
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 4.3e-14 82.0 121 43.0
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 5.6e-14 81.6 135 34.8
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 5.6e-14 81.6 135 34.8
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.3e-13 80.5 78 51.3
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.3e-13 80.5 78 51.3
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.3e-13 80.5 78 51.3
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.6e-13 80.1 141 38.3
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.8e-13 79.3 142 40.8
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 6.2e-13 78.2 118 39.0
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 2.4e-12 76.3 140 40.0
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 5.3e-12 75.1 145 36.6
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 6.9e-12 74.7 131 38.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 6.9e-12 74.7 77 50.6
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 1.5e-11 73.6 132 39.4
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 2.6e-11 72.8 70 55.7
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 3.4e-11 72.4 147 34.7
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 5.8e-11 71.6 132 37.1
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 5.8e-11 71.6 132 37.1
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 7.6e-11 71.2 119 39.5
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 9.9e-11 70.9 141 37.6
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 9.9e-11 70.9 141 37.6
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.3e-10 70.5 74 50.0
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.3e-10 70.5 144 38.9
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 2.9e-10 69.3 123 37.4
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 6.4e-10 68.2 156 32.1
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 1.4e-09 67.0 37 73.0
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 4.2e-09 65.5 65 50.8
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 5.5e-09 65.1 86 41.9
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 9.3e-09 64.3 65 46.2
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 1.2e-08 63.9 126 38.9
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 6.0e-08 61.6 114 36.0
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 7.9e-08 61.2 61 49.2
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 7.9e-08 61.2 36 69.4
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 1.3e-07 60.5 53 52.8
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 5.1e-07 58.5 118 33.9
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 1.1e-06 57.4 144 32.6
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 1.9e-06 56.6 63 34.9
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 7.4e-06 54.7 84 34.5
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 7.4e-06 54.7 118 33.9


User provided reference genes

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