Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc153.6 Carica papaya HOM05D004430 ORTHO05D005088 9.9e-104 380.2 200 100.0
Potri.015G079800 Populus trichocarpa HOM05D004430 ORTHO05D005088 2.0e-80 302.8 193 82.4
Atru.chr9.2519 Acer truncatum HOM05D004430 ORTHO05D005088 1.4e-78 296.6 193 82.4
COL.COLO4_30100 Corchorus olitorius HOM05D004430 ORTHO05D005088 1.6e-77 293.1 193 82.9
Sabra15G0104100 Salix brachista HOM05D004430 ORTHO05D005088 4.6e-77 291.6 193 79.8
Nitab4.5_0003229g0080 Nicotiana tabacum HOM05D004430 ORTHO05D005088 7.9e-77 290.8 193 78.8
Nitab4.5_0001207g0060 Nicotiana tabacum HOM05D004430 ORTHO05D005088 3.0e-76 288.9 193 78.2
Manes.06G107200 Manihot esculenta HOM05D004430 ORTHO05D005088 3.9e-76 288.5 193 78.8
GSVIVG01007703001 Vitis vinifera HOM05D004430 ORTHO05D005088 3.9e-76 288.5 193 81.9
CSS0010843 Camellia sinensis var. sinensis HOM05D004430 ORTHO05D005088 2.6e-75 285.8 192 78.6
Potri.012G088500 Populus trichocarpa HOM05D004430 ORTHO05D005088 3.3e-75 285.4 193 78.8
TWI14G0761 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 3.3e-75 285.4 196 80.1
TWI39G0976 Tripterygium wilfordii HOM05D004430 ORTHO05D005088 5.7e-75 284.6 193 79.8
Duzib205G1695 Durio zibethinus HOM05D004430 ORTHO05D005088 1.3e-74 283.5 193 82.4
Dinv20629 Davidia involucrata HOM05D004430 ORTHO05D005088 2.2e-74 282.7 193 79.8
Gohir.D02G117900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 3.7e-74 282.0 193 81.9
Gorai.005G135600 Gossypium raimondii HOM05D004430 ORTHO05D005088 3.7e-74 282.0 193 81.9
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 6.3e-74 281.2 193 77.2
Manes.06G107300 Manihot esculenta HOM05D004430 ORTHO05D005088 6.3e-74 281.2 193 77.7
Gohir.A03G089900 Gossypium hirsutum HOM05D004430 ORTHO05D005088 1.8e-73 279.6 193 80.8
Solyc03g112660.3 Solanum lycopersicum HOM05D004430 ORTHO05D005088 2.0e-72 276.2 193 76.2
Haze_07543 Corylus avellana HOM05D004430 ORTHO05D005088 5.9e-72 274.6 193 78.2
Lj4g0003819 Lotus japonicus HOM05D004430 ORTHO05D005088 5.9e-72 274.6 197 77.7
TAR374G1038 Trochodendron aralioides HOM05D004430 ORTHO05D005088 6.5e-71 271.2 199 76.9
Lalb_Chr07g0182821 Lupinus albus HOM05D004430 ORTHO05D005088 8.5e-71 270.8 193 77.7
Actinidia19112 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-70 270.4 193 76.7
CsaV3_1G001360 Cucumis sativus L. HOM05D004430 ORTHO05D005088 1.1e-70 270.4 193 75.1
MELO3C026283.2 Cucumis melo HOM05D004430 ORTHO05D005088 1.4e-70 270.0 193 75.1
vmacro19413 Vaccinium macrocarpon HOM05D004430 ORTHO05D005088 5.5e-70 268.1 195 74.4
Thecc.03G018800 Theobroma cacao HOM05D004430 ORTHO05D005088 7.2e-70 267.7 193 78.2
Rhsim08G0174600 Rhododendron simsii HOM05D004430 ORTHO05D005088 3.6e-69 265.4 193 74.6
Sopen03g031740 Solanum pennellii HOM05D004430 ORTHO05D005088 6.1e-69 264.6 193 73.6
Dinv38562 Davidia involucrata HOM05D004430 ORTHO05D005088 7.9e-69 264.2 193 75.6
Aa31LG4G9770 Aethionema arabicum HOM05D004430 ORTHO05D005088 1.0e-68 263.8 193 75.6
Glyma.17G087600 Glycine max HOM05D004430 ORTHO05D005088 1.4e-68 263.5 191 77.5
TPR.G28716 Trifolium pratense HOM05D004430 ORTHO05D005088 1.4e-68 263.5 194 74.7
RcHm_v2.0_Chr7g0193171 Rosa chinensis HOM05D004430 ORTHO05D005088 1.8e-68 263.1 193 78.8
ClCG06G017130 Citrullus lanatus HOM05D004430 ORTHO05D005088 5.2e-68 261.5 193 73.1
Sabra12G0063700 Salix brachista HOM05D004430 ORTHO05D005088 6.7e-68 261.2 238 63.9
Migut.D01964 Erythranthe guttata HOM05D004430 ORTHO05D005088 2.6e-67 259.2 191 75.4
Duzib068G0887 Durio zibethinus HOM05D004430 ORTHO05D005088 4.4e-67 258.5 193 76.2
Hund02762 Selenicereus undatus HOM05D004430 ORTHO05D005088 1.7e-66 256.5 192 72.9
EL10Ac5g10708 Beta vulgaris HOM05D004430 ORTHO05D005088 3.7e-66 255.4 191 73.3
Sed0007760 Sechium edule HOM05D004430 ORTHO05D005088 1.1e-65 253.8 193 72.0
arahy.Tifrunner.gnm1.ann1.FBBL0Z Arachis hypogaea HOM05D004430 ORTHO05D005088 5.3e-65 251.5 193 73.6
MD06G1170800 Malus domestica HOM05D004430 ORTHO05D005088 5.3e-65 251.5 193 75.6
Nn3g16781 Nelumbo nucifera HOM05D004430 ORTHO05D005088 5.3e-65 251.5 195 72.8
Oeu036008.4 Olea europaea HOM05D004430 ORTHO05D005088 7.0e-65 251.1 200 70.0
Cc04_g12380 Coffea canephora HOM05D004430 ORTHO05D005088 1.2e-64 250.4 190 70.5
Aqoxy3G01105 Aquilegia oxysepala HOM05D004430 ORTHO05D005088 4.5e-64 248.4 184 73.4
VMungo1215G2998 Vigna mungo HOM05D004430 ORTHO05D005088 5.9e-64 248.1 193 72.5
Carub.0007s1638 Capsella rubella HOM05D004430 ORTHO05D005088 7.7e-64 247.7 194 70.1
Sed0016557 Sechium edule HOM05D004430 ORTHO05D005088 7.7e-64 247.7 193 72.0
Oeu024704.1 Olea europaea HOM05D004430 ORTHO05D005088 1.7e-63 246.5 193 69.4
PSO017G2086 Papaver somniferum HOM05D004430 ORTHO05D005088 3.8e-63 245.4 196 70.9
AT4G24680 Arabidopsis thaliana HOM05D004430 ORTHO05D005088 5.0e-63 245.0 194 70.6
Duzib084G1065 Durio zibethinus HOM05D004430 ORTHO05D005088 5.0e-63 245.0 198 72.2
Lalb_Chr12g0201701 Lupinus albus HOM05D004430 ORTHO05D005088 5.0e-63 245.0 193 71.5
SalBow6G6763 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.0e-63 245.0 193 69.9
SalBow6G6905 Salvia bowleyana HOM05D004430 ORTHO05D005088 5.0e-63 245.0 193 69.9
AUR62028764 Chenopodium quinoa HOM05D004430 ORTHO05D005088 8.5e-63 244.2 192 70.8
MBI10_g44384_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 8.5e-63 244.2 183 74.3
PSO478G3312 Papaver somniferum HOM05D004430 ORTHO05D005088 8.5e-63 244.2 196 70.4
Sc04g0001690 Simmondsia chinensis HOM05D004430 ORTHO05D005088 8.5e-63 244.2 193 73.6
Ah.11g051460 Amaranthus hybridus HOM05D004430 ORTHO05D005088 1.1e-62 243.8 191 71.7
MBI19_g24062_MAGBIO Magnolia biondii HOM05D004430 ORTHO05D005088 1.5e-62 243.4 183 74.3
AUR62008183 Chenopodium quinoa HOM05D004430 ORTHO05D005088 1.9e-62 243.0 192 70.3
Medtr3g077440 Medicago truncatula HOM05D004430 ORTHO05D005088 3.2e-62 242.3 194 72.2
Lsat_1_v5_gn_4_75700 Lactuca sativa HOM05D004430 ORTHO05D005088 5.5e-62 241.5 184 72.3
THA.LOC104809247 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 1.2e-61 240.4 193 71.5
Prupe.5G170400 Prunus persica HOM05D004430 ORTHO05D005088 1.6e-61 240.0 193 74.1
AL7G28520 Arabidopsis lyrata HOM05D004430 ORTHO05D005088 2.1e-61 239.6 191 71.2
Eucgr.B00248 Eucalyptus grandis HOM05D004430 ORTHO05D005088 4.7e-61 238.4 193 72.5
Lalb_Chr13g0297721 Lupinus albus HOM05D004430 ORTHO05D005088 8.0e-61 237.7 191 73.3
Psat5g115080 Pisum sativum HOM05D004430 ORTHO05D005088 5.2e-60 235.0 193 71.0
FAN04G2171 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.5e-59 233.4 193 72.5
HanXRQChr11g0348291 Helianthus annuus HOM05D004430 ORTHO05D005088 1.5e-59 233.4 192 69.3
Thhalv10024214m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.6e-59 232.6 193 67.9
FAN08G1542 Fragaria x ananassa HOM05D004430 ORTHO05D005088 2.6e-59 232.6 193 72.5
CARHR232060 Cardamine hirsuta HOM05D004430 ORTHO05D005088 5.7e-59 231.5 193 67.4
FAN13G0016 Fragaria x ananassa HOM05D004430 ORTHO05D005088 7.5e-59 231.1 193 72.0
Thhalv10024213m.g Eutrema salsugineum HOM05D004430 ORTHO05D005088 2.2e-58 229.6 193 66.8
FAN18G1146 Fragaria x ananassa HOM05D004430 ORTHO05D005088 3.7e-58 228.8 193 71.5
Sp7g22670 Schrenkiella parvula HOM05D004430 ORTHO05D005088 1.4e-57 226.9 193 67.4
FAN18G2048 Fragaria x ananassa HOM05D004430 ORTHO05D005088 1.8e-57 226.5 193 71.0
FvH4_5g05640 Fragaria vesca HOM05D004430 ORTHO05D005088 3.1e-57 225.7 194 71.1
THA.LOC104809778 Tarenaya hassleriana HOM05D004430 ORTHO05D005088 5.3e-57 224.9 192 69.8
C07p53740 Brassica napus HOM05D004430 ORTHO05D005088 9.1e-57 224.2 193 65.3
BolC7t45865H Brassica oleracea HOM05D004430 ORTHO05D005088 9.1e-57 224.2 194 65.5
MD14G1176500 Malus domestica HOM05D004430 ORTHO05D005088 1.2e-56 223.8 193 70.5
BcaB03g12441 Brassica carinata HOM05D004430 ORTHO05D005088 1.6e-56 223.4 193 65.8
BraA03t14619Z Brassica rapa HOM05D004430 ORTHO05D005088 2.7e-56 222.6 194 65.5
SGA_v2.0_scaffold7G04148 Striga asiatica HOM05D004430 ORTHO05D005088 2.7e-56 222.6 195 63.6
BcaC06g32869 Brassica carinata HOM05D004430 ORTHO05D005088 7.7e-56 221.1 183 67.8
A03p55450 Brassica napus HOM05D004430 ORTHO05D005088 1.0e-55 220.7 193 64.8
unitig_37.g12744 Utricularia gibba HOM05D004430 ORTHO05D005088 1.0e-55 220.7 195 64.6
BcaC09g50842 Brassica carinata HOM05D004430 ORTHO05D005088 3.8e-55 218.8 193 65.3
Ca_16155_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 6.5e-55 218.0 193 66.3
ATR0757G157 Amborella trichopoda HOM05D004430 ORTHO05D005088 1.9e-54 216.5 181 70.7
C01p20010 Brassica napus HOM05D004430 ORTHO05D005088 1.9e-54 216.5 193 64.8
A01p16020 Brassica napus HOM05D004430 ORTHO05D005088 1.2e-53 213.8 195 64.6
HanXRQChr17g0548691 Helianthus annuus HOM05D004430 ORTHO05D005088 2.7e-53 212.6 193 68.4
BraA01t01536Z Brassica rapa HOM05D004430 ORTHO05D005088 1.0e-52 210.7 199 63.3
BolC1t01928H Brassica oleracea HOM05D004430 ORTHO05D005088 1.4e-52 210.3 199 63.3
PGR083G1025 Punica granatum HOM05D004430 ORTHO05D005088 6.8e-52 208.0 193 65.3
QL10p008934 Quercus lobata HOM05D004430 ORTHO05D005088 8.8e-52 207.6 199 61.3
CDE02G0036 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 1.5e-51 206.8 184 63.6
Peaxi162Scf00089g00174 Petunia axillaris HOM05D004430 ORTHO05D005088 5.7e-51 204.9 193 61.7
Ca_16154_v3 Cicer arietinum L. HOM05D004430 ORTHO05D005088 7.5e-51 204.5 193 65.3
CAN.G1166.22 Capsicum annuum HOM05D004430 ORTHO05D005088 4.8e-50 201.8 193 61.1
ECA232G4503 Erigeron canadensis HOM05D004430 ORTHO05D005088 1.4e-49 200.3 191 63.4
CDE06G0437 Ceratophyllum demersum HOM05D004430 ORTHO05D005088 5.4e-49 198.4 184 62.5
Psat5g115040 Pisum sativum HOM05D004430 ORTHO05D005088 2.7e-48 196.1 193 61.1
HPP92_006241 Vanilla planifolia HOM05D004430 ORTHO05D005088 8.0e-45 184.5 194 61.3
Glyma.05G039400 Glycine max HOM05D004430 ORTHO05D005088 1.8e-44 183.3 193 58.5
CANSAT80G0620 Cannabis sativa HOM05D004430 ORTHO05D005088 4.0e-44 182.2 193 60.1
TPR.G28721 Trifolium pratense HOM05D004430 ORTHO05D005088 3.4e-43 179.1 193 58.5
SEGI_40513 Sequoiadendron giganteum HOM05D004430 ORTHO05D005088 2.2e-42 176.4 192 57.8
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 4.9e-42 175.3 151 66.9
Zm00001eb028710 Zea mays HOM05D004430 ORTHO05D005088 1.8e-41 173.3 195 60.0
MSTRG.4361 Avicennia marina HOM05D004430 ORTHO05D005088 4.1e-41 172.2 193 57.0
Phvul.003G202300 Phaseolus vulgaris HOM05D004430 ORTHO05D005088 2.0e-40 169.9 198 55.1
HPP92_024337 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.7e-40 169.5 198 58.6
Zm00001eb136860 Zea mays HOM05D004430 ORTHO05D005088 1.3e-39 167.2 195 57.4
HPP92_006251 Vanilla planifolia HOM05D004430 ORTHO05D005088 1.7e-39 166.8 194 57.2
SHI17143 Sapria himalayana HOM05D004430 ORTHO05D005088 2.9e-39 166.0 216 51.4
Medtr3g077450 Medicago truncatula HOM05D004430 ORTHO05D005088 4.7e-37 158.7 195 55.9
arahy.Tifrunner.gnm1.ann1.I95HTR Arachis hypogaea HOM05D004430 ORTHO05D005088 1.4e-33 147.1 193 51.3
Mapoly0057s0099 Marchantia polymorpha HOM05D004430 ORTHO05D005088 1.5e-27 127.1 218 48.2
Pp3c4_23740 Physcomitrium patens HOM05D004430 ORTHO05D005088 9.5e-22 107.8 217 41.9
TAR622G0342 Trochodendron aralioides HOM05D004430 ORTHO05D005088 4.7e-21 105.5 69 76.8
SMO174G0145 Selaginella moellendorffii HOM05D004430 ORTHO05D005088 6.8e-20 101.7 224 37.5
HPP92_024330 Vanilla planifolia HOM05D004430 ORTHO05D005088 2.0e-19 100.1 197 41.6
TAR622G0490 Trochodendron aralioides HOM05D004430 ORTHO05D005088 5.8e-19 98.6 92 65.2
Pp3c26_2830 Physcomitrium patens HOM05D004430 ORTHO05D005088 5.4e-17 92.0 224 38.4
Pp3c26_2670 Physcomitrium patens HOM05D004430 ORTHO05D005088 7.8e-16 88.2 223 38.1
Actinidia19338 Actinidia chinensis HOM05D004430 ORTHO05D005088 1.1e-14 84.3 64 70.3
Pp3c4_22960 Physcomitrium patens HOM05D004430 ORTHO05D005088 2.1e-13 80.1 198 38.9
AagrBONN_evm.TU.Sc2ySwM_344.4397 Anthoceros agrestis HOM05D004430 ORTHO05D005088 3.6e-13 79.3 230 37.4
SHI23780 Sapria himalayana HOM05D004430 ORTHO05D005088 6.8e-12 75.1 141 42.6
CBR_g19277 Chara braunii HOM05D004430 ORTHO05D005088 5.4e-09 65.5 229 32.3


User provided reference genes

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