Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc153.5 Carica papaya HOM05D005107 ORTHO05D006200 1.9e-195 685.6 344 100.0
Thecc.03G018700 Theobroma cacao HOM05D005107 ORTHO05D006200 4.2e-134 481.9 344 67.4
Atru.chr9.2518 Acer truncatum HOM05D005107 ORTHO05D006200 8.7e-132 474.2 345 67.2
COL.COLO4_30099 Corchorus olitorius HOM05D005107 ORTHO05D006200 2.0e-128 463.0 344 65.4
QL10p008945 Quercus lobata HOM05D005107 ORTHO05D006200 3.5e-125 452.2 346 65.6
GSVIVG01007704001 Vitis vinifera HOM05D005107 ORTHO05D006200 7.9e-125 451.1 344 65.1
Gorai.008G293700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.9e-123 446.4 344 62.5
Gohir.D12G273300 Gossypium hirsutum HOM05D005107 ORTHO05D006200 2.5e-123 446.0 344 62.2
Gohir.A12G272600 Gossypium hirsutum HOM05D005107 ORTHO05D006200 4.3e-123 445.3 344 62.2
MD14G1176600 Malus domestica HOM05D005107 ORTHO05D006200 3.1e-121 439.1 344 63.1
Dinv20630 Davidia involucrata HOM05D005107 ORTHO05D006200 6.9e-121 438.0 344 64.8
Gorai.001G071700 Gossypium raimondii HOM05D005107 ORTHO05D006200 1.2e-120 437.2 344 60.8
Gohir.D07G068200 Gossypium hirsutum HOM05D005107 ORTHO05D006200 5.8e-120 434.9 344 61.0
CSS0000196 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.3e-119 433.7 344 63.1
Prupe.5G170500 Prunus persica HOM05D005107 ORTHO05D006200 1.3e-119 433.7 344 63.7
Ciclev10021009m.g Citrus clementina HOM05D005107 ORTHO05D006200 1.7e-119 433.3 346 63.6
Duzib205G0074 Durio zibethinus HOM05D005107 ORTHO05D006200 2.2e-119 433.0 336 62.8
FvH4_5g05630 Fragaria vesca HOM05D005107 ORTHO05D006200 2.2e-119 433.0 344 62.5
Potri.015G079700 Populus trichocarpa HOM05D005107 ORTHO05D006200 7.2e-118 427.9 345 60.9
Gohir.A07G063500 Gossypium hirsutum HOM05D005107 ORTHO05D006200 3.5e-117 425.6 344 59.9
Eucgr.B00249 Eucalyptus grandis HOM05D005107 ORTHO05D006200 4.6e-117 425.2 344 61.3
TAR374G1030 Trochodendron aralioides HOM05D005107 ORTHO05D006200 4.3e-115 418.7 344 59.6
RcHm_v2.0_Chr7g0193181 Rosa chinensis HOM05D005107 ORTHO05D006200 4.8e-114 415.2 354 61.0
Potri.012G088600 Populus trichocarpa HOM05D005107 ORTHO05D006200 8.2e-114 414.5 345 60.0
Sp2g26180 Schrenkiella parvula HOM05D005107 ORTHO05D006200 3.1e-113 412.5 347 57.9
MD06G1170900 Malus domestica HOM05D005107 ORTHO05D006200 5.3e-113 411.8 344 60.8
AL8G40070 Arabidopsis lyrata HOM05D005107 ORTHO05D006200 1.3e-111 407.1 346 57.8
PGR083G1692 Punica granatum HOM05D005107 ORTHO05D006200 6.5e-111 404.8 347 58.8
Carub.0008s2376 Capsella rubella HOM05D005107 ORTHO05D006200 8.5e-111 404.4 346 57.2
TWI23G1004 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 1.1e-110 404.1 344 58.7
CiPaw.11G023500 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.4e-110 403.7 346 61.8
Hma1.2p1_0592F.1_g185565 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.5e-110 402.9 344 60.8
Sabra15G0104000 Salix brachista HOM05D005107 ORTHO05D006200 3.2e-110 402.5 356 58.1
Sabra12G0063800 Salix brachista HOM05D005107 ORTHO05D006200 1.6e-109 400.2 345 57.4
BolC9t53818H Brassica oleracea HOM05D005107 ORTHO05D006200 2.1e-109 399.8 347 57.1
CARHR276850 Cardamine hirsuta HOM05D005107 ORTHO05D006200 2.1e-109 399.8 346 57.8
A09p08000 Brassica napus HOM05D005107 ORTHO05D006200 4.6e-109 398.7 339 57.2
Thhalv10004512m.g Eutrema salsugineum HOM05D005107 ORTHO05D006200 6.1e-109 398.3 346 57.5
Hma1.2p1_0046F.1_g026720 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 6.1e-109 398.3 344 59.3
AT5G63050 Arabidopsis thaliana HOM05D005107 ORTHO05D006200 3.9e-108 395.6 348 56.3
FAN04G1011 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.8e-108 394.4 344 59.3
FAN18G1528 Fragaria x ananassa HOM05D005107 ORTHO05D006200 8.8e-108 394.4 344 59.0
Manes.06G107100 Manihot esculenta HOM05D005107 ORTHO05D006200 5.7e-107 391.7 345 59.1
CSS0014290 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 6.3e-106 388.3 344 59.0
Aa31LG11G620 Aethionema arabicum HOM05D005107 ORTHO05D006200 1.1e-105 387.5 337 55.8
TAR622G1391 Trochodendron aralioides HOM05D005107 ORTHO05D006200 2.4e-105 386.3 344 59.3
C09p09050 Brassica napus HOM05D005107 ORTHO05D006200 3.1e-105 386.0 338 56.5
CSS0028022 Camellia sinensis var. sinensis HOM05D005107 ORTHO05D006200 1.2e-104 384.0 344 59.0
FAN08G1807 Fragaria x ananassa HOM05D005107 ORTHO05D006200 2.0e-104 383.3 345 58.8
TWI14G0467 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 2.6e-104 382.9 344 57.0
Nitab4.5_0001207g0070 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.5e-102 376.3 343 56.6
THA.LOC104818212 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 5.5e-102 375.2 344 54.9
PGSC0003DMG401018164 Solanum tuberosum HOM05D005107 ORTHO05D006200 7.2e-102 374.8 344 55.5
Haze_07542 Corylus avellana HOM05D005107 ORTHO05D006200 4.7e-101 372.1 295 64.1
CANSAT80G2623 Cannabis sativa HOM05D005107 ORTHO05D006200 7.9e-101 371.3 345 54.2
Sopen03g031750 Solanum pennellii HOM05D005107 ORTHO05D006200 1.0e-100 370.9 344 55.2
Sc22g0001200 Simmondsia chinensis HOM05D005107 ORTHO05D006200 1.8e-100 370.2 345 55.7
Solyc03g112670.3 Solanum lycopersicum HOM05D005107 ORTHO05D006200 9.7e-99 364.4 344 55.2
ClCG01G013290 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.8e-98 362.1 345 55.1
Migut.O00123 Erythranthe guttata HOM05D005107 ORTHO05D006200 4.8e-98 362.1 345 55.7
Nn2g12593 Nelumbo nucifera HOM05D005107 ORTHO05D006200 4.8e-98 362.1 344 54.7
PSO063G3062 Papaver somniferum HOM05D005107 ORTHO05D006200 1.1e-97 360.9 345 55.4
THA.LOC104821481 Tarenaya hassleriana HOM05D005107 ORTHO05D006200 1.4e-97 360.5 346 54.0
Peaxi162Scf00089g01740 Petunia axillaris HOM05D005107 ORTHO05D006200 1.8e-97 360.1 329 55.6
CAN.G1166.21 Capsicum annuum HOM05D005107 ORTHO05D006200 5.3e-97 358.6 344 54.4
Nitab4.5_0003229g0090 Nicotiana tabacum HOM05D005107 ORTHO05D006200 2.0e-96 356.7 326 56.7
Ca_21938_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 2.6e-96 356.3 344 55.2
PSO832G2872 Papaver somniferum HOM05D005107 ORTHO05D006200 1.0e-95 354.4 345 55.1
BraA06t25929Z Brassica rapa HOM05D005107 ORTHO05D006200 2.2e-95 353.2 347 52.2
BraA09t36452Z Brassica rapa HOM05D005107 ORTHO05D006200 5.0e-95 352.1 294 58.2
arahy.Tifrunner.gnm1.ann1.5AH6W7 Arachis hypogaea HOM05D005107 ORTHO05D006200 2.5e-94 349.7 345 53.6
arahy.Tifrunner.gnm1.ann1.6379ZA Arachis hypogaea HOM05D005107 ORTHO05D006200 2.5e-94 349.7 345 53.3
Lalb_Chr08g0236621 Lupinus albus HOM05D005107 ORTHO05D006200 3.2e-94 349.4 344 53.2
Sed0009116 Sechium edule HOM05D005107 ORTHO05D006200 5.5e-94 348.6 345 53.0
Lj4g0022030 Lotus japonicus HOM05D005107 ORTHO05D006200 9.4e-94 347.8 344 53.2
Aqoxy3G02846 Aquilegia oxysepala HOM05D005107 ORTHO05D006200 2.1e-93 346.7 344 52.9
VMungo1309G0437 Vigna mungo HOM05D005107 ORTHO05D006200 2.7e-93 346.3 344 52.6
A06p29810 Brassica napus HOM05D005107 ORTHO05D006200 4.7e-93 345.5 347 51.9
Manes.14G063800 Manihot esculenta HOM05D005107 ORTHO05D006200 4.7e-93 345.5 309 57.6
FAN18G1595 Fragaria x ananassa HOM05D005107 ORTHO05D008464 1.4e-92 344.0 319 56.1
Phvul.009G176100 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 1.4e-92 344.0 344 51.2
BcaB04g19949 Brassica carinata HOM05D005107 ORTHO05D006200 1.8e-92 343.6 292 58.6
BolC8t50877H Brassica oleracea HOM05D005107 ORTHO05D006200 1.8e-92 343.6 350 51.7
Nn4g22685 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.0e-92 342.8 344 54.1
Nn4g22690 Nelumbo nucifera HOM05D005107 ORTHO05D006200 3.0e-92 342.8 344 54.1
Lj1g0017341 Lotus japonicus HOM05D005107 ORTHO05D006200 5.2e-92 342.0 344 52.0
BolC3t18614H Brassica oleracea HOM05D005107 ORTHO05D006200 6.7e-92 341.7 350 51.7
FAN13G2858 Fragaria x ananassa HOM05D005107 ORTHO05D008464 6.7e-92 341.7 319 56.1
TWI39G0316 Tripterygium wilfordii HOM05D005107 ORTHO05D006200 6.7e-92 341.7 352 51.7
SalBow5G2679 Salvia bowleyana HOM05D005107 ORTHO05D006200 8.8e-92 341.3 346 52.3
VMungo1215G1987 Vigna mungo HOM05D005107 ORTHO05D006200 2.0e-91 340.1 338 55.0
Glyma.06G180400 Glycine max HOM05D005107 ORTHO05D006200 2.6e-91 339.7 344 52.9
Glyma.04G185700 Glycine max HOM05D005107 ORTHO05D006200 4.4e-91 339.0 344 51.7
TPR.G37531 Trifolium pratense HOM05D005107 ORTHO05D006200 4.4e-91 339.0 344 52.0
MSTRG.23144 Avicennia marina HOM05D005107 ORTHO05D006200 9.7e-91 337.8 345 51.3
Phvul.003G202200 Phaseolus vulgaris HOM05D005107 ORTHO05D006200 9.7e-91 337.8 345 53.3
MBI10_g44387_MAGBIO Magnolia biondii HOM05D005107 ORTHO05D006200 2.8e-90 336.3 338 52.7
MELO3C002281.2 Cucumis melo HOM05D005107 ORTHO05D006200 3.1e-89 332.8 347 50.1
Medtr4g105500 Medicago truncatula HOM05D005107 ORTHO05D006200 9.1e-89 331.3 335 53.4
C08p32660 Brassica napus HOM05D005107 ORTHO05D006200 1.6e-88 330.5 343 50.7
Peaxi162Scf00255g00912 Petunia axillaris HOM05D005107 ORTHO05D006200 1.5e-86 323.9 345 48.7
Ca_16156_v3 Cicer arietinum L. HOM05D005107 ORTHO05D006200 4.2e-86 322.4 344 49.7
Oeu016417.1 Olea europaea HOM05D005107 ORTHO05D006200 4.2e-86 322.4 329 50.8
Psat4g058600 Pisum sativum HOM05D005107 ORTHO05D006200 1.6e-85 320.5 344 48.8
SalBow6G4644 Salvia bowleyana HOM05D005107 ORTHO05D006200 1.6e-85 320.5 344 48.5
Cc06_g17290 Coffea canephora HOM05D005107 ORTHO05D006200 3.6e-85 319.3 336 52.4
HanXRQChr05g0154601 Helianthus annuus HOM05D005107 ORTHO05D006200 6.1e-85 318.5 349 52.7
BcaC01g02550 Brassica carinata HOM05D005107 ORTHO05D006200 6.8e-84 315.1 350 48.9
Migut.D01962 Erythranthe guttata HOM05D005107 ORTHO05D006200 8.8e-84 314.7 344 50.6
EL10Ac2g03054 Beta vulgaris HOM05D005107 ORTHO05D006200 2.0e-83 313.5 344 48.8
Dinv38563 Davidia involucrata HOM05D003072 ORTHO05D008464 2.0e-83 313.5 260 62.3
Sed0010155 Sechium edule HOM05D005107 ORTHO05D006200 3.7e-82 309.3 345 49.0
AUR62018143 Chenopodium quinoa HOM05D005107 ORTHO05D006200 8.3e-82 308.1 308 52.3
Medtr3g077490 Medicago truncatula HOM05D005107 ORTHO05D006200 3.1e-81 306.2 344 48.0
Ah.10g031930 Amaranthus hybridus HOM05D005107 ORTHO05D006200 6.5e-79 298.5 345 47.5
Psat5g115520 Pisum sativum HOM05D005107 ORTHO05D006200 8.5e-79 298.1 344 47.4
AUR62042560 Chenopodium quinoa HOM05D005107 ORTHO05D006200 1.5e-78 297.4 308 51.6
Lj9C446G12 Lonicera japonica HOM05D004430 ORTHO05D005088 1.6e-77 293.9 344 47.4
Actinidia19110 Actinidia chinensis HOM05D005107 ORTHO05D006200 1.0e-76 291.2 322 49.4
CsaV3_1G008660 Cucumis sativus L. HOM05D005107 ORTHO05D006200 1.8e-76 290.4 345 46.7
TPR.G14919 Trifolium pratense HOM05D005107 ORTHO05D006200 2.0e-75 287.0 344 46.5
HanXRQChr08g0235041 Helianthus annuus HOM05D005107 ORTHO05D006200 3.4e-75 286.2 344 46.2
ClCG06G017120 Citrullus lanatus HOM05D005107 ORTHO05D006200 4.4e-75 285.8 324 47.8
ECA246G1934 Erigeron canadensis HOM05D005107 ORTHO05D006200 4.4e-75 285.8 340 47.6
CiPaw.12G028400 Carya illinoinensis HOM05D005107 ORTHO05D006200 1.4e-73 280.8 335 48.4
Lsat_1_v5_gn_5_15301 Lactuca sativa HOM05D005107 ORTHO05D006200 1.4e-73 280.8 345 46.7
Lj5A126T86 Lonicera japonica HOM05D005107 ORTHO05D006200 9.2e-73 278.1 292 52.4
DCAR_016047 Daucus carota HOM05D005107 ORTHO05D006200 2.3e-71 273.5 344 44.5
C03p63570 Brassica napus HOM05D005107 ORTHO05D006200 3.8e-71 272.7 312 47.4
CDE05G1562 Ceratophyllum demersum HOM05D005107 ORTHO05D006200 2.8e-69 266.5 280 51.4
MELO3C026284.2 Cucumis melo HOM05D005107 ORTHO05D006200 2.6e-67 260.0 332 45.5
unitig_26.g9615 Utricularia gibba HOM05D005107 ORTHO05D006200 3.4e-67 259.6 336 44.6
HPP92_001300 Vanilla planifolia HOM05D005107 ORTHO05D006200 1.9e-62 243.8 344 41.6
BcaB02g09719 Brassica carinata HOM05D005107 ORTHO05D006200 2.0e-59 233.8 343 40.8
Oeu024703.1 Olea europaea HOM05D005107 ORTHO05D006200 6.0e-56 222.2 199 57.8
Eucgr.J01240 Eucalyptus grandis HOM05D005107 ORTHO05D006200 3.0e-55 219.9 137 75.2
Hund13172 Selenicereus undatus HOM05D005107 ORTHO05D006200 1.5e-54 217.6 335 39.1
Eucgr.C04410 Eucalyptus grandis HOM05D005107 ORTHO05D006200 7.5e-51 205.3 137 71.5
Eucgr.C03135 Eucalyptus grandis HOM05D005107 ORTHO05D006200 1.7e-50 204.1 129 73.6
ECA232G4933 Erigeron canadensis HOM05D005107 ORTHO05D006200 1.9e-49 200.7 344 37.8
ECA232G2224 Erigeron canadensis HOM05D005107 ORTHO05D006200 3.0e-47 193.4 242 45.0
SGA_v2.0_scaffold90G27886 Striga asiatica HOM05D005107 ORTHO05D006200 8.9e-44 181.8 211 43.6
HanXRQChr02g0035961 Helianthus annuus HOM05D005107 ORTHO05D006200 8.6e-39 165.2 288 37.8
Lsat_1_v5_gn_1_28200 Lactuca sativa HOM05D005107 ORTHO05D006200 3.1e-36 156.8 327 36.1
BcaC04g23368 Brassica carinata HOM05D005107 ORTHO05D006200 2.0e-35 154.1 103 66.0
Duzib068G0452 Durio zibethinus HOM05D005107 ORTHO05D006200 1.0e-31 141.7 136 54.4
ATR1152G005 Amborella trichopoda HOM05D005107 ORTHO05D006200 9.0e-12 75.5 210 28.1
SEGI_21940 Sequoiadendron giganteum HOM05D024261 ORTHO05D006200 6.5e-10 69.3 248 27.4
Hma1.2p1_0522F.1_g171880 Hydrangea macrophylla HOM05D005107 ORTHO05D006200 2.7e-08 63.9 39 74.4


User provided reference genes

Program Settings