Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc153.19 Carica papaya HOM05D004617 ORTHO05D005531 4.7e-169 597.8 312 100.0
Cpa.g.sc153.20 Carica papaya HOM05D004617 ORTHO05D005531 3.0e-99 365.9 186 98.4
Atru.chr9.2539 Acer truncatum HOM05D004617 ORTHO05D005531 2.2e-94 349.7 329 60.2
Thecc.03G024100 Theobroma cacao HOM05D004617 ORTHO05D005531 2.5e-93 346.3 294 63.6
Ciclev10020950m.g Citrus clementina HOM05D004617 ORTHO05D005531 1.6e-92 343.6 330 58.5
Dinv38556 Davidia involucrata HOM05D004617 ORTHO05D005531 6.8e-91 338.2 303 60.1
Duzib205G1820 Durio zibethinus HOM05D004617 ORTHO05D005531 1.7e-89 333.6 301 61.1
COL.COLO4_30121 Corchorus olitorius HOM05D004617 ORTHO05D005531 4.8e-89 332.0 294 61.6
Gohir.A12G272900 Gossypium hirsutum HOM05D004617 ORTHO05D005531 4.8e-89 332.0 287 62.4
Gorai.008G294000 Gossypium raimondii HOM05D004617 ORTHO05D005531 4.1e-88 328.9 288 61.5
GSVIVG01007687001 Vitis vinifera HOM05D004617 ORTHO05D005531 2.7e-87 326.2 304 58.9
Gohir.D12G273600 Gossypium hirsutum HOM05D004617 ORTHO05D005531 4.5e-87 325.5 287 61.0
Dinv20620 Davidia involucrata HOM05D004617 ORTHO05D005531 6.5e-86 321.6 304 59.2
Haze_07552 Corylus avellana HOM05D004617 ORTHO05D005531 3.2e-85 319.3 323 56.3
QL10p008526 Quercus lobata HOM05D004617 ORTHO05D005531 4.2e-85 318.9 297 58.6
QL10p008663 Quercus lobata HOM05D004617 ORTHO05D005531 5.5e-85 318.5 296 59.1
TWI39G0523 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 2.8e-84 316.2 280 60.7
CSS0013084 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 1.0e-83 314.3 302 57.0
TAR629G3522 Trochodendron aralioides HOM05D004617 ORTHO05D005531 1.4e-83 313.9 305 57.4
Manes.06G108000 Manihot esculenta HOM05D004617 ORTHO05D005531 6.8e-83 311.6 293 59.4
Gohir.A09G172500 Gossypium hirsutum HOM05D004617 ORTHO05D005531 8.8e-83 311.2 291 58.4
CiPaw.11G022700 Carya illinoinensis HOM05D004617 ORTHO05D005531 3.4e-82 309.3 302 56.6
CSS0042906 Camellia sinensis var. sinensis HOM05D004617 ORTHO05D005531 9.8e-82 307.8 303 56.4
Gorai.006G189800 Gossypium raimondii HOM05D004617 ORTHO05D005531 2.2e-81 306.6 284 59.5
CiPaw.12G028900 Carya illinoinensis HOM05D004617 ORTHO05D005531 8.3e-81 304.7 303 55.1
PGR044G1277 Punica granatum HOM05D004617 ORTHO05D005531 1.4e-80 303.9 303 56.4
Potri.015G080900 Populus trichocarpa HOM05D004617 ORTHO05D005531 4.1e-80 302.4 298 55.4
Sopen03g031610 Solanum pennellii HOM05D004617 ORTHO05D005531 5.9e-79 298.5 301 52.8
Nitab4.5_0001284g0070 Nicotiana tabacum HOM05D004617 ORTHO05D005531 1.7e-78 297.0 301 52.5
TWI23G0363 Tripterygium wilfordii HOM05D004617 ORTHO05D005531 1.7e-78 297.0 287 57.8
Nitab4.5_0011992g0040 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.9e-78 296.2 302 53.0
Potri.012G088000 Populus trichocarpa HOM05D004617 ORTHO05D005531 5.0e-78 295.4 299 55.9
Rhsim12G0166500 Rhododendron simsii HOM05D004617 ORTHO05D005531 1.5e-77 293.9 341 50.1
Solyc03g112550.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.3e-77 292.4 301 51.8
Potri.T124408 Populus trichocarpa HOM05D004617 ORTHO05D005531 1.0e-75 287.7 292 54.8
Cc04_g12560 Coffea canephora HOM05D004617 ORTHO05D005531 1.4e-75 287.3 296 54.4
PGSC0003DMG400018106 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.4e-75 287.3 295 51.5
vmacro16629 Vaccinium macrocarpon HOM05D004617 ORTHO05D005531 2.6e-74 283.1 330 49.7
Nn4g22667 Nelumbo nucifera HOM05D004617 ORTHO05D005531 3.4e-74 282.7 289 54.0
MD06G1170100 Malus domestica HOM05D004617 ORTHO05D005531 2.9e-73 279.6 303 51.8
MD14G1175700 Malus domestica HOM05D004617 ORTHO05D005531 4.9e-73 278.9 303 53.5
CAN.G338.4 Capsicum annuum HOM05D004617 ORTHO05D005531 8.3e-73 278.1 299 48.8
DCAR_021575 Daucus carota HOM05D004617 ORTHO05D005531 5.4e-72 275.4 301 52.5
FAN05G0977 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.5e-71 272.7 300 53.0
RcHm_v2.0_Chr7g0193001 Rosa chinensis HOM05D004617 ORTHO05D005531 3.5e-71 272.7 304 52.0
Eucgr.K02817 Eucalyptus grandis HOM05D004617 ORTHO05D005531 4.6e-71 272.3 328 49.7
FvH4_6g24101 Fragaria vesca HOM05D004617 ORTHO05D005531 5.9e-71 271.9 300 52.7
THA.LOC104818211 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 1.3e-70 270.8 300 50.3
Sed0022669 Sechium edule HOM05D004617 ORTHO05D005531 1.7e-70 270.4 307 52.1
Sabra12G0062800 Salix brachista HOM05D004617 ORTHO05D005531 2.3e-70 270.0 346 47.4
CANSAT80G0933 Cannabis sativa HOM05D004617 ORTHO05D005531 3.0e-70 269.6 299 50.8
Sc04g0001670 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.0e-70 269.6 302 51.0
Lsat_1_v5_gn_5_15901 Lactuca sativa HOM05D004617 ORTHO05D005531 7.3e-69 265.0 302 49.0
CsaV3_1G001290 Cucumis sativus L. HOM05D004617 ORTHO05D005531 2.8e-68 263.1 301 50.8
Peaxi162Scf00089g01634 Petunia axillaris HOM05D004617 ORTHO05D005531 2.8e-68 263.1 301 47.5
Oeu001681.1 Olea europaea HOM05D004617 ORTHO05D005531 4.7e-68 262.3 303 51.5
Hma1.2p1_0046F.1_g026830 Hydrangea macrophylla HOM05D004617 ORTHO05D005531 6.2e-68 261.9 317 48.3
MELO3C026277.2 Cucumis melo HOM05D004617 ORTHO05D005531 1.4e-67 260.8 302 51.3
Glyma.05G040000 Glycine max HOM05D004617 ORTHO05D005531 1.4e-67 260.8 296 50.7
MSTRG.23154 Avicennia marina HOM05D004617 ORTHO05D005531 1.8e-67 260.4 259 52.9
Aa31LG4G16830 Aethionema arabicum HOM05D004617 ORTHO05D005531 2.3e-67 260.0 303 49.5
THA.LOC104798968 Tarenaya hassleriana HOM05D004617 ORTHO05D005531 2.3e-67 260.0 278 51.8
ClCG06G017200 Citrullus lanatus HOM05D004617 ORTHO05D005531 8.9e-67 258.1 302 50.3
Migut.O00131 Erythranthe guttata HOM05D004617 ORTHO05D005531 2.6e-66 256.5 301 49.2
Lj4g0013782 Lotus japonicus HOM05D004617 ORTHO05D005531 2.6e-66 256.5 297 47.8
FvH4_5g05820 Fragaria vesca HOM05D004617 ORTHO05D005531 5.8e-66 255.4 300 48.3
Lalb_Chr23g0273321 Lupinus albus HOM05D004617 ORTHO05D005531 7.5e-66 255.0 289 48.1
Sabra15G0104900 Salix brachista HOM05D004617 ORTHO05D005531 9.8e-66 254.6 304 48.0
ECA246G2887 Erigeron canadensis HOM05D004617 ORTHO05D005531 2.9e-65 253.1 302 47.0
FAN08G0972 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.4e-64 250.8 302 49.3
arahy.Tifrunner.gnm1.ann1.P4R84V Arachis hypogaea HOM05D004617 ORTHO05D005531 3.2e-64 249.6 294 47.3
Carub.0005s1437 Capsella rubella HOM05D004617 ORTHO05D005531 3.2e-64 249.6 305 46.9
Thhalv10010559m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 3.2e-64 249.6 298 47.0
CARHR156970 Cardamine hirsuta HOM05D004617 ORTHO05D005531 4.1e-64 249.2 303 47.2
arahy.Tifrunner.gnm1.ann1.B97T9I Arachis hypogaea HOM05D004617 ORTHO05D005531 5.4e-64 248.8 294 47.3
AL5G27600 Arabidopsis lyrata HOM05D004617 ORTHO05D005531 7.0e-64 248.4 301 46.8
Hund09456 Selenicereus undatus HOM05D004617 ORTHO05D005531 7.0e-64 248.4 304 46.4
Aqoxy3G01097 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 9.2e-64 248.1 267 49.1
Phvul.003G203200 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 9.2e-64 248.1 296 48.3
PSO478G3702 Papaver somniferum HOM05D004617 ORTHO05D005531 1.2e-63 247.7 295 48.5
AUR62029851 Chenopodium quinoa HOM05D004617 ORTHO05D005531 1.6e-63 247.3 299 48.5
Gohir.D09G168200 Gossypium hirsutum HOM05D004617 ORTHO05D005531 2.0e-63 246.9 284 52.5
HanXRQChr05g0154591 Helianthus annuus HOM05D004617 ORTHO05D005531 2.7e-63 246.5 299 45.2
AT3G48210 Arabidopsis thaliana HOM05D004617 ORTHO05D005531 3.5e-63 246.1 301 46.8
Prupe.5G169600 Prunus persica HOM05D004617 ORTHO05D005531 3.5e-63 246.1 303 50.2
VMungo1215G2409 Vigna mungo HOM05D004617 ORTHO05D005531 7.8e-63 245.0 296 46.3
FAN13G0632 Fragaria x ananassa HOM05D004617 ORTHO05D005531 1.7e-62 243.8 261 51.7
Lj9A445T80 Lonicera japonica HOM05D004617 ORTHO05D005531 1.7e-62 243.8 358 41.9
EL10Ac5g10692 Beta vulgaris HOM05D004617 ORTHO05D005531 3.9e-62 242.7 229 53.7
Sc12g0005180 Simmondsia chinensis HOM05D004617 ORTHO05D005531 3.9e-62 242.7 297 47.1
BcaC01g02324 Brassica carinata HOM05D004617 ORTHO05D005531 5.0e-62 242.3 301 43.5
BolC3t18931H Brassica oleracea HOM05D004617 ORTHO05D005531 5.0e-62 242.3 301 43.5
C03p66610 Brassica napus HOM05D004617 ORTHO05D005531 8.6e-62 241.5 301 43.5
MSTRG.11480 Avicennia marina HOM05D004617 ORTHO05D005531 1.1e-61 241.1 296 48.6
Sp5g13810 Schrenkiella parvula HOM05D004617 ORTHO05D005531 1.1e-61 241.1 295 45.4
Phvul.009G175700 Phaseolus vulgaris HOM05D004617 ORTHO05D005531 1.9e-61 240.4 291 47.8
PGSC0003DMG400027080 Solanum tuberosum HOM05D004617 ORTHO05D005531 1.2e-60 237.7 301 45.8
FAN18G1615 Fragaria x ananassa HOM05D004617 ORTHO05D005531 2.1e-60 236.9 233 53.2
BcaB02g10666 Brassica carinata HOM05D004617 ORTHO05D005531 2.8e-60 236.5 304 45.1
BraA06t25690Z Brassica rapa HOM05D004617 ORTHO05D005531 1.4e-59 234.2 302 43.4
Sopen06g027890 Solanum pennellii HOM05D004617 ORTHO05D005531 1.8e-59 233.8 301 45.8
A06p27500 Brassica napus HOM05D004617 ORTHO05D005531 2.3e-59 233.4 302 43.0
PSO017G2275 Papaver somniferum HOM05D004617 ORTHO05D005531 2.3e-59 233.4 294 47.6
Thhalv10010553m.g Eutrema salsugineum HOM05D004617 ORTHO05D005531 3.1e-59 233.0 298 45.0
AUR62008173 Chenopodium quinoa HOM05D004617 ORTHO05D005531 3.7e-57 226.1 256 48.4
Lj5A127T55 Lonicera japonica HOM05D004617 ORTHO05D005531 4.9e-57 225.7 238 54.2
Solyc06g071600.3 Solanum lycopersicum HOM05D004617 ORTHO05D005531 4.9e-57 225.7 301 44.2
TPR.G37539 Trifolium pratense HOM05D004617 ORTHO05D005531 8.3e-57 224.9 285 45.3
CAN.G993.37 Capsicum annuum HOM05D004617 ORTHO05D005531 1.9e-56 223.8 305 44.3
MBI16_g23858_MAGBIO Magnolia biondii HOM05D004617 ORTHO05D005531 3.2e-56 223.0 305 45.6
Actinidia19118 Actinidia chinensis HOM05D004617 ORTHO05D005531 7.1e-56 221.9 224 55.4
AUR62028750 Chenopodium quinoa HOM05D004617 ORTHO05D005531 2.7e-55 219.9 265 47.2
VMungo1309G0654 Vigna mungo HOM05D004617 ORTHO05D005531 6.0e-55 218.8 313 42.5
SGA_v2.0_scaffold90G27877 Striga asiatica HOM05D004617 ORTHO05D005531 3.0e-54 216.5 282 44.7
Ca_21946_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 2.5e-53 213.4 319 42.0
Nitab4.5_0003918g0030 Nicotiana tabacum HOM05D004617 ORTHO05D005531 2.3e-51 206.8 302 40.7
Ca_29672_v3 Cicer arietinum L. HOM05D004617 ORTHO05D005531 6.8e-51 205.3 282 43.6
TAR371G0263 Trochodendron aralioides HOM05D004617 ORTHO05D005531 2.2e-49 200.3 191 56.5
Medtr4g105330 Medicago truncatula HOM05D004617 ORTHO05D005531 3.2e-48 196.4 287 42.2
Psat4g059160 Pisum sativum HOM05D004617 ORTHO05D005531 7.1e-48 195.3 284 40.8
DCAR_004467 Daucus carota HOM05D004617 ORTHO05D005531 3.3e-45 186.4 218 47.2
SalBow5G2990 Salvia bowleyana HOM05D004617 ORTHO05D005531 8.9e-43 178.3 232 43.5
SalBow5G0770 Salvia bowleyana HOM05D004617 ORTHO05D005531 1.2e-42 177.9 232 43.5
HPP92_011588 Vanilla planifolia HOM05D004617 ORTHO05D005531 1.2e-42 177.9 228 44.7
CDE05G2613 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 2.7e-39 166.8 209 42.6
ATR1152G034 Amborella trichopoda HOM05D004617 ORTHO05D005531 7.8e-39 165.2 248 38.7
unitig_0.g2533 Utricularia gibba HOM05D004617 ORTHO05D005531 1.9e-37 160.6 246 40.2
Os05g0110700 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 1.3e-36 157.9 286 34.3
CDE02G4133 Ceratophyllum demersum HOM05D004617 ORTHO05D005531 5.8e-34 149.1 213 42.7
FAN02G3554 Fragaria x ananassa HOM05D004617 ORTHO05D005531 3.8e-33 146.4 137 54.0
Psat4g095560 Pisum sativum HOM05D004617 ORTHO05D005531 1.9e-32 144.1 311 33.1
Os01g0973200 Oryza sativa ssp. japonica HOM05D004617 ORTHO05D005531 6.0e-31 139.0 261 32.2
SEGI_25965 Sequoiadendron giganteum HOM05D004617 ORTHO05D005531 1.3e-30 137.9 212 37.7
Zm00001eb139780 Zea mays HOM05D004617 ORTHO05D005531 1.9e-29 134.0 230 33.5
Glyma.04G186200 Glycine max HOM05D004617 ORTHO05D005531 2.1e-28 130.6 150 44.7
Zm00001eb362200 Zea mays HOM05D004617 ORTHO05D005531 4.9e-25 119.4 273 28.6
A06p19470 Brassica napus HOM05D004617 ORTHO05D005531 1.9e-24 117.5 249 32.9
BraA06t25026Z Brassica rapa HOM05D004617 ORTHO05D005531 2.1e-23 114.0 240 33.3
Atru.chr9.2524 Acer truncatum HOM05D004617 ORTHO05D005531 1.0e-22 111.7 98 66.3
Glyma.06G179933 Glycine max HOM05D004617 ORTHO05D005531 2.3e-22 110.5 135 42.2
arahy.Tifrunner.gnm1.ann1.H09BLY Arachis hypogaea HOM05D004617 ORTHO05D005531 3.3e-21 106.7 142 42.3
BcaC07g39309 Brassica carinata HOM05D004617 ORTHO05D005531 2.1e-20 104.0 188 37.8
Aqoxy5G01948 Aquilegia oxysepala HOM05D004617 ORTHO05D005531 8.2e-20 102.1 178 39.3
Zm00001eb355840 Zea mays HOM05D004617 ORTHO05D005531 3.1e-19 100.1 211 33.6
vmacro20892 Vaccinium macrocarpon HOM05D000448 ORTHO05D000291 7.1e-16 89.0 74 58.1
C08p23230 Brassica napus HOM05D004617 ORTHO05D005531 1.6e-15 87.8 197 29.9
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 5.7e-13 79.3 118 36.4
Mapoly0029s0121 Marchantia polymorpha HOM05D004617 ORTHO05D005531 2.8e-12 77.0 183 30.6
Pp3c8_1270 Physcomitrium patens HOM05D004617 ORTHO05D005531 1.5e-10 71.2 170 26.5
Pp3c3_37370 Physcomitrium patens HOM05D004617 ORTHO05D005531 4.5e-10 69.7 219 26.5
arahy.Tifrunner.gnm1.ann1.8UC028 Arachis hypogaea HOM05D004617 ORTHO05D005531 2.1e-07 60.8 100 40.0
Glyma.17G086900 Glycine max HOM05D004617 ORTHO05D005531 3.6e-07 60.1 84 41.7


User provided reference genes

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