Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 3.5e-143 511.5 247 100.0
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 2.6e-106 389.0 230 80.9
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 4.4e-101 371.7 197 88.3
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 6.1e-95 351.3 226 72.6
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 4.5e-90 335.1 216 71.3
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 3.8e-89 332.0 234 65.8
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 5.0e-89 331.6 234 65.8
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 6.5e-89 331.3 241 64.7
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 6.5e-89 331.3 234 65.8
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 8.5e-89 330.9 230 66.1
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 2.5e-88 329.3 213 71.8
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 3.2e-88 328.9 213 70.4
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 3.2e-88 328.9 213 70.0
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 4.2e-88 328.6 237 65.8
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 5.5e-88 328.2 229 66.8
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 9.4e-88 327.4 220 70.5
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.7e-87 325.9 228 68.0
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 3.6e-87 325.5 241 62.7
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 8.0e-87 324.3 227 68.7
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 2.3e-86 322.8 214 68.7
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 5.2e-86 321.6 207 70.0
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 6.8e-86 321.2 218 66.5
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 6.8e-86 321.2 216 69.0
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 4.4e-85 318.5 226 65.0
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 4.4e-85 318.5 229 63.3
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 9.8e-85 317.4 213 68.1
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 3.7e-84 315.5 218 66.5
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 6.3e-84 314.7 201 71.1
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 4.1e-83 312.0 212 67.0
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 5.4e-83 311.6 231 65.4
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.0e-82 309.7 224 64.3
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 1.0e-81 307.4 216 66.2
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.7e-81 306.6 199 70.4
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 8.6e-81 304.3 229 62.0
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 1.1e-80 303.9 219 62.1
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 5.5e-80 301.6 206 66.0
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 5.5e-80 301.6 207 66.2
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 5.5e-80 301.6 215 64.2
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.6e-79 300.1 208 64.4
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 8.0e-79 297.7 193 68.4
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 1.4e-78 297.0 195 68.7
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.4e-78 297.0 213 63.8
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 1.4e-78 297.0 185 74.6
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.8e-78 296.6 195 69.7
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.8e-78 296.6 195 69.2
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.8e-78 296.6 212 66.0
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 2.3e-78 296.2 207 64.3
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 2.3e-78 296.2 230 60.4
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 3.0e-78 295.8 187 73.8
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 3.0e-78 295.8 200 67.5
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 4.0e-78 295.4 193 69.4
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 4.0e-78 295.4 223 61.0
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 5.2e-78 295.0 201 68.2
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 8.9e-78 294.3 211 64.5
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 8.9e-78 294.3 195 68.7
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 1.2e-77 293.9 210 66.2
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 1.2e-77 293.9 206 64.1
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.5e-77 293.5 223 59.6
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.0e-77 293.1 210 64.8
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.6e-77 292.7 195 68.2
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 3.4e-77 292.4 221 65.2
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 3.4e-77 292.4 207 61.8
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 4.4e-77 292.0 194 68.0
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 5.7e-77 291.6 225 60.9
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 5.7e-77 291.6 225 60.9
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 7.5e-77 291.2 225 60.9
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 9.8e-77 290.8 204 67.6
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.3e-76 290.4 210 64.3
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.7e-76 290.0 195 68.2
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.9e-76 289.3 195 68.2
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 2.9e-76 289.3 221 60.6
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 3.7e-76 288.9 193 67.9
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 3.7e-76 288.9 193 67.9
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 8.3e-76 287.7 201 66.2
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 8.3e-76 287.7 252 57.1
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-75 287.3 193 67.4
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.1e-75 287.3 193 67.9
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.8e-75 286.6 195 67.2
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 3.2e-75 285.8 210 62.4
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 4.1e-75 285.4 201 65.7
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 4.1e-75 285.4 192 66.7
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 2.7e-74 282.7 201 64.2
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 2.7e-74 282.7 201 64.2
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.7e-74 282.7 206 61.2
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 3.5e-74 282.3 209 62.7
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.6e-74 282.0 232 57.8
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.0e-73 280.8 192 66.1
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.3e-73 280.4 174 74.7
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.7e-73 280.0 186 68.3
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 2.3e-73 279.6 201 64.7
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.5e-72 276.2 195 63.6
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 4.3e-72 275.4 208 61.1
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 1.6e-71 273.5 213 60.1
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 2.1e-71 273.1 235 54.5
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 3.6e-71 272.3 195 63.1
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 3.6e-71 272.3 180 67.2
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 4.7e-71 271.9 214 60.7
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 8.0e-71 271.2 185 67.6
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 8.0e-71 271.2 206 60.2
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.0e-70 270.8 244 54.5
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 2.3e-70 269.6 185 67.0
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 3.1e-70 269.2 185 67.0
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 8.9e-70 267.7 182 67.0
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.2e-69 267.3 188 67.0
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 2.6e-69 266.2 215 58.6
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 4.4e-69 265.4 196 63.3
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 5.8e-69 265.0 193 62.7
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 5.8e-69 265.0 193 62.7
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 5.8e-69 265.0 193 62.7
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 7.5e-69 264.6 231 56.3
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 9.8e-69 264.2 196 62.2
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 2.9e-68 262.7 188 63.8
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 2.9e-68 262.7 207 58.5
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 6.4e-68 261.5 185 66.5
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-67 259.6 193 62.2
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-67 259.6 254 52.4
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 2.4e-67 259.6 193 62.2
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 7.0e-67 258.1 228 57.9
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.2e-66 257.3 209 61.2
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-66 256.9 185 65.4
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-65 253.4 204 59.8
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 9.5e-64 247.7 178 65.7
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.5e-61 240.4 161 66.5
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 5.8e-61 238.4 198 56.1
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 1.7e-60 236.9 207 52.2
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 2.9e-60 236.1 174 64.4
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 2.9e-60 236.1 200 56.0
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 6.4e-60 235.0 223 51.1
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 5.4e-59 231.9 191 56.0
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 9.2e-59 231.1 215 50.2
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 1.6e-58 230.3 178 64.0
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.0e-57 226.1 185 59.5
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 6.6e-57 224.9 151 70.2
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 7.3e-56 221.5 218 51.8
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 6.2e-55 218.4 154 68.2
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 2.2e-52 209.9 162 66.7
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 2.4e-46 189.9 125 68.8
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 6.8e-46 188.3 200 47.5
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 3.2e-43 179.5 114 72.8
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 2.0e-37 160.2 228 40.8
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.0e-37 160.2 122 63.9
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 7.1e-35 151.8 206 41.3
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 2.1e-31 140.2 170 45.3
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 2.1e-31 140.2 85 71.8
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 1.4e-30 137.5 170 44.7
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.4e-30 137.5 170 44.7
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.2e-29 134.4 178 44.9
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 1.5e-29 134.0 199 38.7
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.2e-28 130.2 96 64.6
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 1.4e-27 127.5 83 68.7
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.4e-27 126.7 109 57.8
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 9.3e-27 124.8 101 60.4
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 7.9e-26 121.7 87 60.9
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 8.7e-25 118.2 209 34.9
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.3e-24 116.3 100 56.0
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.7e-20 104.0 78 62.8
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.1e-19 101.3 69 68.1
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 7.1e-19 98.6 70 62.9
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.3e-17 93.6 81 48.1
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 3.9e-17 92.8 69 60.9
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 9.6e-16 88.2 148 37.2
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 9.6e-16 88.2 163 36.2
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 2.1e-15 87.0 148 35.1
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 2.1e-15 87.0 148 35.1
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.1e-15 87.0 59 61.0
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 2.5e-08 63.5 45 57.8
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 3.3e-08 63.2 131 33.6
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 6.9e-06 55.5 42 57.1


User provided reference genes

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