Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.1e-88 330.1 192 100.0
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 9.0e-62 240.7 192 71.9
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 5.0e-52 208.4 174 71.8
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 4.7e-50 201.8 181 64.1
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 1.0e-49 200.7 171 69.0
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 3.0e-49 199.1 171 68.4
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 8.8e-49 197.6 173 66.5
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.6e-48 196.1 174 65.5
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 5.7e-48 194.9 179 60.3
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 8.2e-47 191.0 190 63.2
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 8.2e-47 191.0 174 60.9
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.8e-46 189.9 171 65.5
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 2.4e-46 189.5 174 60.3
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 3.1e-46 189.1 174 66.7
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 4.1e-46 188.7 186 64.5
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 9.1e-46 187.6 165 61.8
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 2.6e-45 186.0 194 59.8
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 1.0e-44 184.1 173 60.7
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 1.0e-44 184.1 173 60.7
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 1.0e-44 184.1 173 60.7
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 1.0e-44 184.1 167 63.5
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 1.3e-44 183.7 173 61.8
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 6.5e-44 181.4 173 59.0
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 6.5e-44 181.4 170 65.3
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 6.5e-44 181.4 167 61.7
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 8.5e-44 181.0 185 56.8
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 1.1e-43 180.6 167 61.1
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 2.5e-43 179.5 173 60.7
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.2e-43 179.1 168 60.7
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 5.5e-43 178.3 172 64.0
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 7.2e-43 177.9 167 59.9
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 7.2e-43 177.9 186 57.5
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 7.2e-43 177.9 167 59.3
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 2.1e-42 176.4 166 59.0
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 3.6e-42 175.6 173 59.5
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 3.6e-42 175.6 173 59.5
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 6.1e-42 174.9 167 59.3
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 8.0e-42 174.5 168 66.1
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 8.0e-42 174.5 168 64.9
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 1.4e-41 173.7 182 56.0
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.4e-41 173.7 168 65.5
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 1.4e-41 173.7 176 63.6
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 5.2e-41 171.8 167 57.5
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 6.7e-41 171.4 170 58.2
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 8.8e-41 171.0 168 64.9
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 2.2e-39 166.4 163 62.6
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 2.2e-39 166.4 173 56.6
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 2.8e-39 166.0 181 57.5
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 3.7e-39 165.6 173 57.8
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.1e-38 164.1 174 58.6
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 1.8e-38 163.3 173 59.0
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.4e-38 162.9 174 58.6
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 2.4e-38 162.9 174 58.6
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 3.5e-37 159.1 173 58.4
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 3.5e-37 159.1 171 54.4
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 3.5e-37 159.1 191 53.9
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 4.5e-37 158.7 166 58.4
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.2e-36 156.4 202 52.5
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 5.0e-36 155.2 174 58.6
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 4.2e-35 152.1 183 51.4
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 5.5e-35 151.8 169 52.7
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 7.2e-35 151.4 154 57.1
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 7.2e-35 151.4 174 52.3
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.6e-34 150.2 161 53.4
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 3.6e-34 149.1 154 55.8
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 3.6e-34 149.1 161 59.0
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 2.3e-33 146.4 166 50.6
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 3.0e-33 146.0 181 51.9
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 6.7e-33 144.8 184 48.9
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 5.7e-32 141.7 117 67.5
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 9.7e-32 141.0 188 48.4
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 1.7e-31 140.2 164 51.8
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 4.8e-31 138.7 164 51.2
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 8.2e-31 137.9 161 51.6
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 1.4e-30 137.1 172 49.4
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 1.4e-30 137.1 173 50.3
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 4.1e-30 135.6 164 50.6
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 1.2e-29 134.0 164 50.0
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 1.6e-29 133.7 215 43.7
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 1.6e-29 133.7 177 46.3
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.5e-29 132.5 162 46.9
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 4.5e-29 132.1 179 50.3
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 4.5e-29 132.1 164 56.1
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 7.7e-29 131.3 186 45.2
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 1.0e-28 131.0 189 46.6
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.3e-28 130.6 183 50.3
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 2.2e-28 129.8 165 49.1
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 3.2e-27 125.9 174 45.4
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 9.4e-27 124.4 153 51.0
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 2.1e-26 123.2 189 42.3
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 2.1e-26 123.2 173 48.6
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 3.6e-26 122.5 174 44.8
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 1.8e-25 120.2 150 54.7
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 2.3e-25 119.8 154 49.4
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 2.3e-25 119.8 154 49.4
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 2.3e-25 119.8 192 50.5
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 4.0e-25 119.0 184 44.0
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 4.0e-25 119.0 173 52.0
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 5.2e-25 118.6 174 46.0
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.2e-24 117.5 167 47.3
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 2.0e-24 116.7 158 46.8
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 2.0e-24 116.7 165 43.6
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 4.4e-24 115.5 223 40.4
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 6.3e-23 111.7 152 47.4
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 1.1e-22 110.9 112 54.5
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 3.1e-22 109.4 194 42.3
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 5.4e-22 108.6 103 60.2
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 1.6e-21 107.1 109 61.5
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 2.7e-21 106.3 156 41.7
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 5.9e-21 105.1 177 42.9
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 1.7e-20 103.6 169 40.8
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.0e-20 102.1 167 43.7
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 6.6e-20 101.7 166 48.8
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 1.1e-19 100.9 206 38.8
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 1.9e-19 100.1 177 42.4
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 2.5e-19 99.8 183 43.2
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 3.3e-19 99.4 172 48.3
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 4.2e-19 99.0 164 41.5
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 1.6e-18 97.1 122 50.8
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 2.1e-18 96.7 170 42.9
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 1.8e-17 93.6 103 57.3
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 5.2e-17 92.0 189 41.3
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 3.4e-16 89.4 152 40.8
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 2.2e-15 86.7 86 58.1
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 1.4e-14 84.0 143 37.1
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 7.0e-14 81.6 138 42.8
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 7.0e-14 81.6 140 45.0
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 9.2e-14 81.3 103 51.5
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 2.0e-13 80.1 159 40.3
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.0e-13 80.1 159 40.3
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 5.9e-13 78.6 172 40.7
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 7.8e-13 78.2 125 46.4
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 5.0e-12 75.5 170 36.5
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.5e-11 73.9 75 49.3
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.3e-11 72.4 51 74.5
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 1.2e-10 70.9 121 44.6
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 2.1e-10 70.1 103 49.5
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 3.6e-10 69.3 103 47.6
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 2.3e-09 66.6 72 52.8
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 3.1e-09 66.2 72 52.8
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 8.9e-09 64.7 69 50.7
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.4e-08 62.4 160 33.1
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 4.4e-08 62.4 160 33.1
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 7.5e-08 61.6 50 64.0
C09p05140 Brassica napus HOM05D005061 ORTHO05D006001 9.8e-08 61.2 48 72.9
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 1.3e-07 60.8 163 31.3
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.7e-07 60.5 156 37.8


User provided reference genes

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