Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 6.6e-69 265.0 283 100.0
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.6e-46 189.1 261 89.3
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.3e-45 186.8 259 88.0
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 8.7e-45 184.9 259 86.9
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 8.7e-45 184.9 260 89.6
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 4.3e-44 182.6 259 86.5
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.6e-44 182.2 260 88.8
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 5.6e-44 182.2 259 90.7
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 5.6e-44 182.2 259 90.0
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 7.3e-44 181.8 261 90.8
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 2.1e-43 180.3 259 85.7
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 4.8e-43 179.1 262 88.2
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 4.8e-43 179.1 262 78.6
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 6.2e-43 178.7 259 88.0
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.1e-42 177.9 259 86.9
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.1e-42 177.9 259 86.9
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.1e-42 177.9 260 89.6
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 4.0e-42 176.0 260 91.2
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 6.9e-42 175.3 256 90.2
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 3.4e-41 172.9 260 89.2
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 9.9e-41 171.4 266 84.6
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 1.7e-40 170.6 261 90.0
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 1.7e-40 170.6 261 85.4
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 3.8e-40 169.5 261 83.5
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 3.8e-40 169.5 259 82.2
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 4.2e-39 166.0 260 84.6
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.1e-38 163.7 260 88.5
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 2.1e-38 163.7 259 86.9
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 2.7e-38 163.3 259 84.9
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 7.4e-36 155.2 260 79.2
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 5.3e-34 149.1 259 79.5
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 6.9e-34 148.7 274 78.5
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.2e-33 147.9 259 79.9
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 9.9e-33 144.8 245 83.7
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 1.3e-32 144.4 245 79.6
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.4e-31 141.0 241 83.4
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 7.1e-31 138.7 261 79.7
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 7.9e-30 135.2 255 76.1
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.8e-29 134.0 260 78.5
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.0e-29 133.3 245 81.6
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.1e-29 132.5 245 79.6
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.3e-28 129.4 247 78.5
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 2.1e-27 127.1 259 61.8
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.8e-27 126.7 259 79.9
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.8e-27 126.7 259 75.3
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 8.2e-27 125.2 257 55.6
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 1.4e-26 124.4 259 80.7
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.8e-26 124.0 259 76.4
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 1.8e-26 124.0 218 91.3
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 4.0e-26 122.9 241 74.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.5e-25 119.4 247 83.8
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 7.6e-25 118.6 269 68.4
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.0e-24 118.2 248 83.5
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.0e-24 118.2 247 84.2
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.0e-24 118.2 248 83.5
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.3e-24 117.9 251 82.1
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.7e-24 117.5 277 68.2
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.7e-24 117.5 241 78.8
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 2.2e-24 117.1 261 78.9
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 2.5e-23 113.6 218 84.4
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 7.1e-23 112.1 264 70.1
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 7.1e-23 112.1 264 68.9
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 9.3e-23 111.7 265 69.8
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 2.1e-22 110.5 259 74.9
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.1e-22 110.5 244 76.6
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.7e-22 110.2 244 77.0
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 7.9e-22 108.6 259 73.0
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 1.8e-21 107.5 65 90.8
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 2.3e-21 107.1 214 62.6
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.0e-21 106.7 254 74.4
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.9e-21 106.3 259 68.7
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.9e-20 104.0 259 73.7
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 1.9e-20 104.0 243 77.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.7e-20 101.7 262 75.2
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 4.8e-19 99.4 65 83.1
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 3.1e-18 96.7 198 85.4
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 9.0e-18 95.1 247 72.1
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 1.2e-17 94.7 248 71.8
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.2e-17 94.7 267 76.0
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 3.4e-17 93.2 244 75.4
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 3.4e-17 93.2 252 65.1
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 5.9e-17 92.4 177 90.4
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 7.7e-17 92.0 51 80.4
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.0e-16 91.7 178 89.9
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 2.9e-16 90.1 248 71.8
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.9e-16 90.1 64 71.9
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.9e-16 90.1 219 75.8
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 5.0e-16 89.4 262 64.5
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 1.9e-15 87.4 65 70.8
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.9e-15 87.4 50 74.0
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 9.4e-15 85.1 51 70.6
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 1.2e-14 84.7 330 60.9
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 2.1e-14 84.0 50 74.0
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.1e-14 84.0 244 77.5
Nn5g29212 Nelumbo nucifera HOM05D004463 ORTHO05D004724 2.7e-14 83.6 142 80.3
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 1.0e-13 81.6 51 70.6
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 2.3e-13 80.5 52 71.2
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 3.0e-13 80.1 242 76.0
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 1.5e-12 77.8 51 66.7
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 2.0e-12 77.4 48 72.9
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.5e-12 77.0 44 75.0
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.3e-12 76.3 47 72.3
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 5.7e-12 75.9 245 71.8
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 5.7e-12 75.9 52 65.4
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.7e-12 75.9 51 68.6
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 7.4e-12 75.5 52 65.4
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 7.4e-12 75.5 52 65.4
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 9.7e-12 75.1 49 65.3
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 9.7e-12 75.1 49 65.3
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.3e-11 74.7 218 77.5
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 1.3e-11 74.7 65 53.8
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.7e-11 74.3 50 64.0
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.2e-11 73.9 51 64.7
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.8e-11 72.8 56 62.5
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.8e-10 70.9 47 70.2
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 1.8e-10 70.9 56 58.9
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.4e-10 70.5 220 71.8
Zm00001eb022680 Zea mays HOM05D004463 ORTHO05D004724 2.4e-10 70.5 259 67.2
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 4.1e-10 69.7 51 62.7
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 4.1e-10 69.7 242 71.5
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 5.3e-10 69.3 47 68.1
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 5.3e-10 69.3 51 64.7
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 9.1e-10 68.6 137 76.6
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.0e-09 67.4 58 55.2
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 3.4e-09 66.6 51 60.8
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 5.9e-09 65.9 52 63.5
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.0e-08 65.1 217 74.7
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 1.0e-08 65.1 53 58.5
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 1.7e-08 64.3 51 60.8
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.7e-08 64.3 50 60.0
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 2.9e-08 63.5 51 58.8
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 2.9e-08 63.5 51 58.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 3.8e-08 63.2 51 58.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 5.0e-08 62.8 43 62.8
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 8.5e-08 62.0 51 58.8
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.1e-07 61.6 34 82.4
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.4e-07 61.2 51 56.9
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.9e-07 60.8 51 56.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 2.5e-07 60.5 49 51.0
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.5e-07 60.5 49 61.2
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 3.2e-07 60.1 51 54.9
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.2e-07 60.1 48 60.4
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 4.2e-07 59.7 50 52.0
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 5.5e-07 59.3 51 56.9
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 5.5e-07 59.3 51 56.9
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 5.5e-07 59.3 48 58.3
Ah.08g211810 Amaranthus hybridus HOM05D031029 ORTHO05D004724 1.2e-06 58.2 49 63.3
Cfa005098 Carpinus fangiana HOM05D065658 ORTHO05D004724 1.2e-06 58.2 45 57.8
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.2e-06 58.2 206 71.4
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 2.1e-06 57.4 49 57.1
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.7e-06 57.0 109 89.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 2.7e-06 57.0 49 55.1
Peaxi162Scf00684g00132 Petunia axillaris HOM05D004463 ORTHO05D004724 3.6e-06 56.6 84 50.0
EL10Ac7g16555 Beta vulgaris HOM05D031029 ORTHO05D004724 4.7e-06 56.2 49 59.2
ATR0998G002 Amborella trichopoda HOM05D004463 ORTHO05D004724 6.1e-06 55.8 237 70.9


User provided reference genes

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