Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc15.99 Carica papaya HOM05D002967 ORTHO05D003281 2.9e-55 218.4 115 100.0
Manes.13G130500 Manihot esculenta HOM05D002967 ORTHO05D003281 3.0e-20 102.1 127 49.6
CiPaw.01G026800 Carya illinoinensis HOM05D002967 ORTHO05D003281 3.3e-19 98.6 137 46.7
QL06p043820 Quercus lobata HOM05D002967 ORTHO05D003281 3.3e-19 98.6 139 44.6
Haze_15190 Corylus avellana HOM05D002967 ORTHO05D003281 9.7e-19 97.1 137 47.4
Ciclev10025387m.g Citrus clementina HOM05D002967 ORTHO05D003281 1.6e-18 96.3 127 45.7
Sabra07G0031600 Salix brachista HOM05D002967 ORTHO05D003281 1.6e-18 96.3 128 46.1
Potri.007G036200 Populus trichocarpa HOM05D002967 ORTHO05D003281 2.8e-18 95.5 115 49.6
Oeu032933.1 Olea europaea HOM05D002967 ORTHO05D003281 1.1e-17 93.6 131 46.6
CSS0044282 Camellia sinensis var. sinensis HOM05D002967 ORTHO05D003281 1.8e-17 92.8 141 45.4
Cfa004219 Carpinus fangiana HOM05D002967 ORTHO05D003281 1.8e-17 92.8 137 47.4
MSTRG.2914 Avicennia marina HOM05D002967 ORTHO05D003281 3.1e-17 92.0 110 48.2
THA.LOC104819826 Tarenaya hassleriana HOM05D002967 ORTHO05D003281 5.3e-17 91.3 109 48.6
Nn5g29395 Nelumbo nucifera HOM05D002967 ORTHO05D003281 6.9e-17 90.9 135 43.0
Nitab4.5_0000108g0270 Nicotiana tabacum HOM05D002967 ORTHO05D003281 6.9e-17 90.9 111 55.0
Lj4A137T59 Lonicera japonica HOM05D002967 ORTHO05D003281 9.0e-17 90.5 136 46.3
CsaV3_2G017230 Cucumis sativus L. HOM05D002967 ORTHO05D003281 1.2e-16 90.1 110 44.5
Dinv26755 Davidia involucrata HOM05D002967 ORTHO05D003281 1.2e-16 90.1 142 45.1
MD15G1275000 Malus domestica HOM05D002967 ORTHO05D003281 1.5e-16 89.7 140 43.6
MD02G1160900 Malus domestica HOM05D002967 ORTHO05D003281 2.6e-16 89.0 142 43.0
ClCG02G013140 Citrullus lanatus HOM05D002967 ORTHO05D003281 3.4e-16 88.6 110 45.5
Sed0026248 Sechium edule HOM05D002967 ORTHO05D003281 4.5e-16 88.2 109 45.0
GSVIVG01005082001 Vitis vinifera HOM05D002967 ORTHO05D003281 4.5e-16 88.2 131 44.3
MELO3C020926.2 Cucumis melo HOM05D002967 ORTHO05D003281 1.3e-15 86.7 121 42.1
Nitab4.5_0001014g0110 Nicotiana tabacum HOM05D002967 ORTHO05D003281 1.3e-15 86.7 112 51.8
RcHm_v2.0_Chr2g0103711 Rosa chinensis HOM05D002967 ORTHO05D003281 1.7e-15 86.3 113 46.9
TAR376G0613 Trochodendron aralioides HOM05D002967 ORTHO05D003281 2.2e-15 85.9 135 43.7
Phvul.002G022700 Phaseolus vulgaris HOM05D002967 ORTHO05D003281 2.9e-15 85.5 136 45.6
Prupe.7G142700 Prunus persica HOM05D002967 ORTHO05D003281 3.8e-15 85.1 139 43.2
Thecc.01G047700 Theobroma cacao HOM05D002967 ORTHO05D003281 3.8e-15 85.1 145 43.4
PGR102G1475 Punica granatum HOM05D002967 ORTHO05D003281 5.0e-15 84.7 108 47.2
Rhsim08G0106600 Rhododendron simsii HOM05D002967 ORTHO05D003281 1.9e-14 82.8 133 44.4
RhsimUnG0104900 Rhododendron simsii HOM05D002967 ORTHO05D003281 1.9e-14 82.8 133 44.4
FAN23G1223 Fragaria x ananassa HOM05D002967 ORTHO05D003281 2.5e-14 82.4 113 44.2
FAN19G0299 Fragaria x ananassa HOM05D002967 ORTHO05D003281 5.5e-14 81.3 113 43.4
CANSAT01G1694 Cannabis sativa HOM05D002967 ORTHO05D003281 7.2e-14 80.9 107 44.9
Cc07_g05530 Coffea canephora HOM05D002967 ORTHO05D003281 7.2e-14 80.9 123 45.5
Sc03g0001250 Simmondsia chinensis HOM05D002967 ORTHO05D003281 7.2e-14 80.9 106 49.1
vmacro17899 Vaccinium macrocarpon HOM05D002967 ORTHO05D003281 7.2e-14 80.9 132 42.4
Duzib264G0622 Durio zibethinus HOM05D002967 ORTHO05D003281 1.2e-13 80.1 147 40.1
Glyma.01G181700 Glycine max HOM05D002967 ORTHO05D003281 1.2e-13 80.1 135 45.2
Solyc02g090200.3 Solanum lycopersicum HOM05D002967 ORTHO05D003281 1.2e-13 80.1 110 50.0
Sopen02g034890 Solanum pennellii HOM05D002967 ORTHO05D003281 1.6e-13 79.7 110 50.0
CAN.G836.30 Capsicum annuum HOM05D002967 ORTHO05D003281 2.1e-13 79.3 111 51.4
Peaxi162Scf00993g00025 Petunia axillaris HOM05D002967 ORTHO05D003281 2.7e-13 79.0 112 47.3
TWI73G0117 Tripterygium wilfordii HOM05D002967 ORTHO05D003281 2.7e-13 79.0 134 44.0
FAN28G1129 Fragaria x ananassa HOM05D002967 ORTHO05D003281 3.6e-13 78.6 113 42.5
VMungo1215G3450 Vigna mungo HOM05D002967 ORTHO05D003281 3.6e-13 78.6 127 40.9
arahy.Tifrunner.gnm1.ann1.BKM0WC Arachis hypogaea HOM05D002967 ORTHO05D003281 6.1e-13 77.8 134 41.8
Psat2g164120 Pisum sativum HOM05D002967 ORTHO05D003281 7.9e-13 77.4 133 43.6
PGSC0003DMG400010028 Solanum tuberosum HOM05D002967 ORTHO05D003281 7.9e-13 77.4 111 47.7
TPR.G11336 Trifolium pratense HOM05D002967 ORTHO05D003281 7.9e-13 77.4 133 42.9
TAR628G0275 Trochodendron aralioides HOM05D002967 ORTHO05D003281 7.9e-13 77.4 138 43.5
COL.COLO4_11322 Corchorus olitorius HOM05D002967 ORTHO05D003281 1.0e-12 77.0 146 41.1
Dinv42113 Davidia involucrata HOM05D002967 ORTHO05D003281 1.0e-12 77.0 135 37.8
FAN26G2244 Fragaria x ananassa HOM05D002967 ORTHO05D003281 1.8e-12 76.3 113 40.7
Glyma.11G059900 Glycine max HOM05D002967 ORTHO05D003281 1.8e-12 76.3 135 42.2
Lalb_Chr05g0213121 Lupinus albus HOM05D002967 ORTHO05D003281 1.8e-12 76.3 110 41.8
Hma1.2p1_0261F.1_g105110 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 3.0e-12 75.5 142 39.4
SalBow1G6871 Salvia bowleyana HOM05D002967 ORTHO05D003281 3.0e-12 75.5 121 38.8
Actinidia27930 Actinidia chinensis HOM05D002967 ORTHO05D003281 3.9e-12 75.1 112 40.2
Gohir.D11G195500 Gossypium hirsutum HOM05D002967 ORTHO05D003281 3.9e-12 75.1 138 39.1
Gorai.007G209400 Gossypium raimondii HOM05D002967 ORTHO05D003281 3.9e-12 75.1 138 39.1
Hund13588 Selenicereus undatus HOM05D002967 ORTHO05D003281 3.9e-12 75.1 106 45.3
Gohir.A11G189000 Gossypium hirsutum HOM05D002967 ORTHO05D003281 5.1e-12 74.7 138 39.9
COL.COLO4_11324 Corchorus olitorius HOM05D002967 ORTHO05D003281 6.7e-12 74.3 134 44.0
Medtr5g018400 Medicago truncatula HOM05D002967 ORTHO05D003281 1.5e-11 73.2 134 38.1
Atru.chr3.451 Acer truncatum HOM05D002967 ORTHO05D003281 2.0e-11 72.8 146 38.4
Aa31LG6G13870 Aethionema arabicum HOM05D002967 ORTHO05D003281 2.5e-11 72.4 110 40.9
Lj2g0010753 Lotus japonicus HOM05D002967 ORTHO05D003281 2.5e-11 72.4 136 41.2
Aqoxy5G01410 Aquilegia oxysepala HOM05D002967 ORTHO05D003281 3.3e-11 72.0 143 37.8
Lj9C364G10 Lonicera japonica HOM05D002967 ORTHO05D003281 4.3e-11 71.6 123 40.7
Medtr5g018470 Medicago truncatula HOM05D002967 ORTHO05D003281 4.3e-11 71.6 135 37.8
CARHR245410 Cardamine hirsuta HOM05D002967 ORTHO05D003281 5.7e-11 71.2 123 37.4
Haze_01916 Corylus avellana HOM05D002967 ORTHO05D003281 5.7e-11 71.2 104 44.2
FvH4_1g14770 Fragaria vesca HOM05D002967 ORTHO05D003281 5.7e-11 71.2 113 41.6
DCAR_025685 Daucus carota HOM05D002967 ORTHO05D003281 7.4e-11 70.9 127 40.2
Carub.0004s0275 Capsella rubella HOM05D002967 ORTHO05D003281 9.7e-11 70.5 104 41.3
AT4G37110 Arabidopsis thaliana HOM05D002967 ORTHO05D003281 1.3e-10 70.1 108 42.6
Hma1.2p1_1353F.1_g277770 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 1.3e-10 70.1 98 43.9
Hma1.2p1_1527F.1_g289034 Hydrangea macrophylla HOM05D002967 ORTHO05D003281 1.3e-10 70.1 98 43.9
Sp7g34660 Schrenkiella parvula HOM05D002967 ORTHO05D003281 1.3e-10 70.1 112 40.2
AL4G13520 Arabidopsis lyrata HOM05D002967 ORTHO05D003281 1.7e-10 69.7 106 41.5
DCAR_025684 Daucus carota HOM05D002967 ORTHO05D003281 2.2e-10 69.3 112 43.8
Lsat_1_v5_gn_3_92201 Lactuca sativa HOM05D002967 ORTHO05D003281 2.2e-10 69.3 129 39.5
MBI16_g19888_MAGBIO Magnolia biondii HOM05D002967 ORTHO05D003281 2.8e-10 68.9 110 42.7
Sp4g02500 Schrenkiella parvula HOM05D002967 ORTHO05D003281 6.3e-10 67.8 105 42.9
AUR62001978 Chenopodium quinoa HOM05D002967 ORTHO05D003281 8.2e-10 67.4 107 41.1
MELO3C021926.2 Cucumis melo HOM05D002967 ORTHO05D003281 8.2e-10 67.4 104 39.4
Ah.03g144020 Amaranthus hybridus HOM05D002967 ORTHO05D003281 1.1e-09 67.0 108 41.7
A01p01940 Brassica napus HOM05D002967 ORTHO05D003281 1.1e-09 67.0 103 42.7
TWI79G0973 Tripterygium wilfordii HOM05D002967 ORTHO05D003281 1.1e-09 67.0 105 41.9
C01p02100 Brassica napus HOM05D002967 ORTHO05D003281 1.4e-09 66.6 110 40.0
ClCG09G017650 Citrullus lanatus HOM05D002967 ORTHO05D003281 1.4e-09 66.6 106 38.7
Manes.15G144900 Manihot esculenta HOM05D002967 ORTHO05D003281 1.4e-09 66.6 103 41.7
Sabra09G0082700 Salix brachista HOM05D002967 ORTHO05D003281 1.4e-09 66.6 106 39.6
Aa31LG7G13340 Aethionema arabicum HOM05D002967 ORTHO05D003281 1.8e-09 66.2 132 34.8
CSS0004019 Camellia sinensis var. sinensis HOM05D002967 ORTHO05D003281 1.8e-09 66.2 126 38.1
Ah.02g123930 Amaranthus hybridus HOM05D002967 ORTHO05D003281 2.4e-09 65.9 106 41.5
HPP92_019447 Vanilla planifolia HOM05D002967 ORTHO05D003281 2.4e-09 65.9 106 41.5
vmacro19473 Vaccinium macrocarpon HOM05D002967 ORTHO05D003281 3.1e-09 65.5 102 40.2
CDE04G1790 Ceratophyllum demersum HOM05D002967 ORTHO05D003281 5.3e-09 64.7 134 34.3
Lalb_Chr09g0322901 Lupinus albus HOM05D002967 ORTHO05D003281 5.3e-09 64.7 104 39.4
Potri.009G108400 Populus trichocarpa HOM05D002967 ORTHO05D003281 5.3e-09 64.7 106 38.7
BolC1t00202H Brassica oleracea HOM05D002967 ORTHO05D003281 6.9e-09 64.3 117 39.3
CARHR293140 Cardamine hirsuta HOM05D002967 ORTHO05D003281 6.9e-09 64.3 105 38.1
BraA01t00183Z Brassica rapa HOM05D002967 ORTHO05D003281 9.1e-09 63.9 140 37.9
ECA240G3361 Erigeron canadensis HOM05D002967 ORTHO05D003281 1.2e-08 63.5 99 39.4
Migut.H00488 Erythranthe guttata HOM05D002967 ORTHO05D003281 1.5e-08 63.2 102 40.2
CDE07G0802 Ceratophyllum demersum HOM05D002967 ORTHO05D003281 2.0e-08 62.8 134 33.6
C04p52840 Brassica napus HOM05D002967 ORTHO05D003281 2.6e-08 62.4 122 36.9
Rhsim05G0079200 Rhododendron simsii HOM05D002967 ORTHO05D003281 2.6e-08 62.4 102 41.2
A04p17930 Brassica napus HOM05D002967 ORTHO05D003281 3.4e-08 62.0 105 41.0
BolC4t26849H Brassica oleracea HOM05D002967 ORTHO05D003281 3.4e-08 62.0 105 40.0
Lsat_1_v5_gn_9_109060 Lactuca sativa HOM05D002967 ORTHO05D003281 3.4e-08 62.0 99 40.4
Prupe.8G113400 Prunus persica HOM05D002967 ORTHO05D003281 3.4e-08 62.0 103 39.8
AT2G23530 Arabidopsis thaliana HOM05D002967 ORTHO05D003281 4.5e-08 61.6 122 33.6
AUR62003826 Chenopodium quinoa HOM05D002967 ORTHO05D003281 4.5e-08 61.6 125 36.0
PSO541G5630 Papaver somniferum HOM05D002967 ORTHO05D003281 7.7e-08 60.8 105 39.0
Migut.H02541 Erythranthe guttata HOM05D002967 ORTHO05D003281 1.3e-07 60.1 103 38.8
HanXRQChr03g0072111 Helianthus annuus HOM05D002967 ORTHO05D003281 1.3e-07 60.1 97 40.2
HanXRQChr12g0361041 Helianthus annuus HOM05D002967 ORTHO05D003281 1.7e-07 59.7 113 37.2
PSO675G7490 Papaver somniferum HOM05D002967 ORTHO05D003281 1.7e-07 59.7 105 41.0
QL11p039087 Quercus lobata HOM05D002967 ORTHO05D003281 2.2e-07 59.3 106 39.6
Sed0006017 Sechium edule HOM05D002967 ORTHO05D003281 2.9e-07 58.9 106 35.8
Oeu046357.2 Olea europaea HOM05D002967 ORTHO05D003281 3.8e-07 58.5 126 34.9
Prupe.8G113300 Prunus persica HOM05D002967 ORTHO05D003281 3.8e-07 58.5 107 37.4
Cc00_g04700 Coffea canephora HOM05D002967 ORTHO05D003281 5.0e-07 58.2 99 36.4
BcaNung03506 Brassica carinata HOM05D002967 ORTHO05D003281 6.5e-07 57.8 121 37.2
FAN15G1887 Fragaria x ananassa HOM05D002967 ORTHO05D003281 6.5e-07 57.8 140 28.6
BraA04t17413Z Brassica rapa HOM05D002967 ORTHO05D003281 8.5e-07 57.4 123 35.8
Duzib052G0060 Durio zibethinus HOM05D002967 ORTHO05D003281 8.5e-07 57.4 103 37.9
MD10G1087400 Malus domestica HOM05D002967 ORTHO05D003281 8.5e-07 57.4 103 38.8
RcHm_v2.0_Chr6g0259631 Rosa chinensis HOM05D002967 ORTHO05D003281 8.5e-07 57.4 126 31.0
AL7G13890 Arabidopsis lyrata HOM05D002967 ORTHO05D003281 1.1e-06 57.0 124 34.7
FAN20G0861 Fragaria x ananassa HOM05D002967 ORTHO05D003281 1.4e-06 56.6 128 29.7
Phvul.003G296100 Phaseolus vulgaris HOM05D002967 ORTHO05D003281 1.4e-06 56.6 120 34.2
VMungo0251G2728 Vigna mungo HOM05D002967 ORTHO05D003281 1.4e-06 56.6 121 33.9
Glyma.02G136900 Glycine max HOM05D002967 ORTHO05D003281 1.9e-06 56.2 92 37.0
Lj4g0020084 Lotus japonicus HOM05D002967 ORTHO05D003281 2.5e-06 55.8 107 35.5
arahy.Tifrunner.gnm1.ann1.6YR4L6 Arachis hypogaea HOM05D002967 ORTHO05D003281 3.2e-06 55.5 103 36.9
Carub.0007s0330 Capsella rubella HOM05D002967 ORTHO05D003281 5.5e-06 54.7 121 36.4
FvH4_2g07200 Fragaria vesca HOM05D002967 ORTHO05D003281 5.5e-06 54.7 110 31.8
Peaxi162Scf00651g00210 Petunia axillaris HOM05D002967 ORTHO05D003281 5.5e-06 54.7 97 40.2
GSVIVG01031846001 Vitis vinifera HOM05D002967 ORTHO05D003281 5.5e-06 54.7 107 35.5
FAN24G3221 Fragaria x ananassa HOM05D002967 ORTHO05D003281 7.2e-06 54.3 110 31.8
Medtr5g018380 Medicago truncatula HOM05D000213 ORTHO05D003281 9.4e-06 53.9 132 34.8
Solyc12g088480.2 Solanum lycopersicum HOM05D002967 ORTHO05D003281 9.4e-06 53.9 97 41.2


User provided reference genes

Program Settings