Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 5.3e-142 507.7 257 100.0
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 9.7e-27 124.8 144 52.1
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 1.3e-23 114.4 114 57.9
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 2.9e-23 113.2 120 47.5
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 1.4e-22 110.9 120 50.0
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 2.5e-22 110.2 107 50.5
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 4.2e-22 109.4 121 54.5
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 9.4e-22 108.2 118 52.5
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 1.6e-21 107.5 114 53.5
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 3.6e-21 106.3 111 54.1
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 6.1e-21 105.5 111 53.2
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 1.0e-20 104.8 113 51.3
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 1.4e-20 104.4 111 50.5
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 1.8e-20 104.0 99 53.5
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 1.8e-20 104.0 118 50.0
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 3.0e-20 103.2 128 44.5
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 1.1e-19 101.3 109 51.4
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 5.7e-19 99.0 155 35.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 7.4e-19 98.6 113 48.7
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 1.3e-18 97.8 93 52.7
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 1.3e-18 97.8 93 52.7
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 1.3e-18 97.8 93 52.7
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 2.2e-18 97.1 109 47.7
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 2.8e-18 96.7 119 48.7
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 3.7e-18 96.3 93 51.6
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 3.7e-18 96.3 93 51.6
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 3.7e-18 96.3 111 49.5
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 3.7e-18 96.3 111 49.5
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 3.7e-18 96.3 111 49.5
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 4.8e-18 95.9 113 48.7
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 4.8e-18 95.9 113 47.8
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 4.8e-18 95.9 113 48.7
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 6.3e-18 95.5 113 46.9
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 8.2e-18 95.1 124 45.2
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 1.4e-17 94.4 126 44.4
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 1.8e-17 94.0 113 46.0
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 2.4e-17 93.6 124 44.4
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 5.3e-17 92.4 111 46.8
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 6.9e-17 92.0 119 40.3
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 6.9e-17 92.0 123 45.5
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 9.1e-17 91.7 117 46.2
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 9.1e-17 91.7 111 46.8
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.2e-16 91.3 116 44.0
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 1.2e-16 91.3 115 45.2
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 3.4e-16 89.7 119 39.5
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 5.9e-16 89.0 124 41.9
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 5.9e-16 89.0 125 36.8
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 7.7e-16 88.6 113 47.8
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 1.0e-15 88.2 81 53.1
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.0e-15 88.2 108 43.5
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 1.7e-15 87.4 141 38.3
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 2.2e-15 87.0 126 45.2
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 2.9e-15 86.7 115 41.7
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 3.8e-15 86.3 87 50.6
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 6.5e-15 85.5 115 40.0
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 8.5e-15 85.1 87 50.6
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 8.5e-15 85.1 87 50.6
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 8.5e-15 85.1 119 48.7
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.1e-14 84.7 108 42.6
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 1.9e-14 84.0 79 50.6
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 2.5e-14 83.6 118 44.1
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 2.5e-14 83.6 134 37.3
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 4.2e-14 82.8 124 43.5
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 7.2e-14 82.0 189 32.3
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 9.4e-14 81.6 81 54.3
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 1.6e-13 80.9 115 40.9
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 2.7e-13 80.1 100 42.0
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 3.6e-13 79.7 110 40.9
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 3.6e-13 79.7 84 47.6
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 4.7e-13 79.3 108 39.8
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 1.0e-12 78.2 164 32.3
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 1.0e-12 78.2 148 33.1
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 1.4e-12 77.8 114 38.6
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 2.3e-12 77.0 132 39.4
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 8.8e-12 75.1 118 35.6
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 1.1e-11 74.7 114 35.1
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 2.6e-11 73.6 117 35.9
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 5.7e-11 72.4 116 34.5
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 1.7e-10 70.9 112 39.3
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 2.2e-10 70.5 79 46.8
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 4.8e-10 69.3 123 37.4
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 1.1e-09 68.2 67 50.7
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 2.4e-09 67.0 79 43.0
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 4.1e-09 66.2 113 32.7
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 7.0e-09 65.5 77 39.0
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 1.2e-08 64.7 121 34.7
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 1.6e-08 64.3 125 36.8
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 2.6e-08 63.5 80 42.5
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 5.0e-07 59.3 122 36.9
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 3.2e-06 56.6 87 43.7
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 5.5e-06 55.8 114 28.1


User provided reference genes

Program Settings