Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 2.1e-291 1005.0 511 100.0
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 1.6e-81 307.8 553 38.0
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 7.4e-79 298.9 551 37.2
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 3.2e-74 283.5 537 38.4
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 2.1e-73 280.8 561 35.3
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 4.7e-73 279.6 551 37.2
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 7.5e-71 272.3 527 38.5
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 2.8e-70 270.4 530 37.2
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 4.8e-70 269.6 520 36.9
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 8.2e-70 268.9 573 36.0
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 2.9e-67 260.4 540 36.9
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 3.8e-67 260.0 556 34.5
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 2.5e-66 257.3 540 36.5
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 9.4e-66 255.4 532 34.6
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 4.0e-64 250.0 599 32.6
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 5.7e-63 246.1 547 33.6
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 4.1e-61 240.0 572 32.5
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 8.6e-59 232.3 542 33.0
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 1.1e-58 231.9 512 33.8
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 1.1e-58 231.9 528 33.1
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 2.1e-57 227.6 550 34.0
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 6.3e-54 216.1 546 30.0
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 8.3e-54 215.7 523 33.5
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 3.1e-53 213.8 571 30.6
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 9.2e-53 212.2 541 33.5
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 1.2e-52 211.8 550 32.5
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 1.6e-52 211.5 571 30.5
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 1.6e-52 211.5 512 31.8
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 1.6e-52 211.5 523 32.7
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 2.7e-52 210.7 520 31.7
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 5.9e-52 209.5 553 30.9
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 1.7e-51 208.0 571 30.3
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 1.1e-50 205.3 546 32.1
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 7.3e-50 202.6 517 32.9
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 9.5e-50 202.2 548 31.2
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 1.2e-49 201.8 552 31.2
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 1.2e-49 201.8 552 31.2
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 1.2e-49 201.8 552 31.2
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 4.7e-49 199.9 552 31.0
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 4.7e-49 199.9 552 31.0
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 8.0e-49 199.1 567 29.8
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 2.3e-48 197.6 550 30.5
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 3.0e-48 197.2 547 31.3
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 1.3e-46 191.8 540 32.2
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 1.3e-46 191.8 414 34.1
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 2.2e-46 191.0 553 29.1
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 8.3e-46 189.1 538 32.0
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 1.1e-45 188.7 554 29.6
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 3.2e-45 187.2 578 30.1
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 5.4e-45 186.4 491 31.8
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 2.0e-44 184.5 571 30.1
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 4.6e-44 183.3 627 27.8
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 1.3e-43 181.8 524 29.8
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.5e-42 178.3 548 29.2
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 6.2e-41 172.9 554 30.5
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 8.9e-40 169.1 551 29.0
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 1.2e-39 168.7 561 28.3
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 1.1e-37 162.2 545 26.8
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 1.4e-37 161.8 549 28.4
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 1.4e-37 161.8 550 29.6
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 4.6e-36 156.8 570 26.3
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.3e-35 155.2 508 29.3
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 3.0e-35 154.1 573 27.1
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 3.0e-35 154.1 546 28.9
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 3.3e-34 150.6 546 28.9
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 4.7e-33 146.7 576 25.7
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 8.9e-32 142.5 559 26.7
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 4.4e-31 140.2 584 25.9
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 4.4e-31 140.2 555 27.2
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 1.3e-30 138.7 563 25.2
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 2.7e-28 131.0 334 31.7
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 7.8e-28 129.4 555 24.9
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 7.8e-28 129.4 592 24.7
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 2.3e-27 127.9 557 26.2
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 3.0e-27 127.5 552 27.0
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 1.5e-26 125.2 554 23.8
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 2.8e-25 120.9 502 24.9
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 4.7e-25 120.2 542 24.5
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 4.4e-23 113.6 560 25.0
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 5.8e-23 113.2 513 25.5
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 3.8e-22 110.5 545 26.1
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 2.4e-21 107.8 515 24.3
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 7.8e-20 102.8 474 24.5
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 1.7e-19 101.7 506 24.1
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 1.2e-17 95.5 484 22.9
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 1.5e-15 88.6 346 25.4
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.4e-15 87.0 284 26.4
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.3e-10 70.5 287 24.4
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 1.6e-09 68.6 162 29.6
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 1.1e-08 65.9 194 28.4


User provided reference genes

Program Settings