Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 3.5e-222 775.0 498 100.0
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 3.4e-76 290.0 220 66.8
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 3.0e-72 276.9 218 64.2
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 8.6e-72 275.4 322 48.8
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 3.3e-71 273.5 217 65.4
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 9.5e-71 271.9 226 60.6
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.6e-70 271.2 217 65.0
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.6e-70 271.2 324 49.4
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 4.7e-70 269.6 200 67.0
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 8.0e-70 268.9 320 46.6
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.0e-69 268.5 316 50.0
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.8e-69 267.7 324 48.8
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 6.8e-69 265.8 223 61.0
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 8.9e-69 265.4 203 63.1
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 2.6e-68 263.8 284 52.1
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.2e-67 260.8 283 49.5
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.9e-67 260.4 157 77.7
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.9e-67 260.4 157 77.7
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 2.9e-67 260.4 197 65.5
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 3.7e-67 260.0 227 60.4
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 6.4e-67 259.2 158 76.6
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 3.2e-66 256.9 194 66.0
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 9.2e-66 255.4 284 48.6
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.6e-65 254.6 223 60.5
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 4.6e-65 253.1 201 63.7
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 7.8e-65 252.3 171 70.8
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 1.0e-64 251.9 212 60.8
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.3e-64 251.5 191 66.0
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 3.0e-64 250.4 192 64.6
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 3.9e-64 250.0 193 64.2
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 5.0e-64 249.6 194 63.9
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 5.0e-64 249.6 152 73.7
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 5.0e-64 249.6 194 63.9
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 5.0e-64 249.6 167 67.7
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 8.6e-64 248.8 181 65.2
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.1e-63 248.4 192 65.6
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.1e-63 248.4 152 75.7
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 1.5e-63 248.1 311 46.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 2.5e-63 247.3 188 66.5
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 3.3e-63 246.9 192 63.5
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 3.3e-63 246.9 188 66.5
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 4.3e-63 246.5 155 72.3
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 5.6e-63 246.1 204 62.3
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 7.3e-63 245.7 152 75.0
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 9.5e-63 245.4 192 63.5
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 9.5e-63 245.4 192 63.5
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 1.2e-62 245.0 157 71.3
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.6e-62 244.6 328 43.6
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 2.8e-62 243.8 194 63.4
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 1.1e-61 241.9 281 47.0
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.5e-60 238.0 152 70.4
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.0e-60 237.7 152 69.7
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 2.6e-60 237.3 208 59.1
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 2.6e-60 237.3 202 58.9
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 4.4e-60 236.5 206 58.3
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.3e-59 235.0 270 48.1
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 1.3e-59 235.0 270 48.1
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 4.9e-59 233.0 234 54.3
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 4.9e-59 233.0 152 71.7
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.4e-58 230.7 152 71.1
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.4e-58 230.7 152 71.1
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.2e-58 230.3 152 71.1
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 5.4e-58 229.6 184 59.2
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 1.2e-57 228.4 153 69.9
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 4.6e-57 226.5 166 63.9
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 1.7e-56 224.6 166 65.1
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 3.9e-56 223.4 154 65.6
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 8.6e-56 222.2 277 46.2
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 8.6e-56 222.2 152 69.1
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 1.5e-55 221.5 156 62.2
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.3e-55 220.3 155 64.5
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 5.6e-55 219.5 161 66.5
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 7.3e-55 219.2 186 54.8
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 6.2e-54 216.1 282 43.3
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 5.2e-53 213.0 176 56.8
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 5.2e-53 213.0 176 56.8
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 6.8e-53 212.6 228 49.6
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 8.9e-53 212.2 274 44.5
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 8.9e-53 212.2 214 52.3
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 2.6e-52 210.7 144 69.4
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 4.4e-52 209.9 208 51.9
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 5.8e-52 209.5 175 57.1
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 7.6e-52 209.1 141 66.0
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 1.3e-51 208.4 157 67.5
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 2.9e-51 207.2 213 51.2
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 2.9e-51 207.2 151 65.6
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 3.8e-51 206.8 183 56.3
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.4e-50 204.9 156 60.9
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.9e-50 204.5 200 56.0
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 1.9e-50 204.5 141 64.5
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.4e-50 204.1 156 60.9
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-49 201.8 168 58.3
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-49 201.8 168 58.3
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-49 201.8 168 58.3
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 1.2e-49 201.8 168 58.3
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.6e-49 201.4 163 58.3
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-47 195.3 146 62.3
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 9.6e-47 192.2 163 56.4
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.6e-46 191.4 156 56.4
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 2.1e-46 191.0 198 53.0
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 2.1e-46 191.0 145 59.3
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 2.8e-46 190.7 159 57.9
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.4e-45 188.3 173 57.2
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.1e-45 187.2 168 57.1
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 7.6e-44 182.6 133 63.2
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 9.9e-44 182.2 149 57.0
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 8.4e-43 179.1 234 44.4
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 1.1e-42 178.7 157 59.2
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 2.4e-42 177.6 131 61.1
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 2.7e-41 174.1 103 75.7
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 3.5e-41 173.7 141 60.3
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 7.8e-41 172.6 102 76.5
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 3.0e-40 170.6 166 54.2
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 6.6e-40 169.5 101 77.2
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 2.5e-39 167.5 171 50.9
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 8.1e-38 162.5 133 56.4
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 2.4e-37 161.0 214 41.1
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 5.8e-36 156.4 208 39.4
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.2e-33 148.7 120 60.8
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 2.7e-33 147.5 104 60.6
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 4.6e-33 146.7 193 43.0
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 4.6e-33 146.7 193 43.0
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.0e-32 145.6 133 48.9
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 1.9e-31 141.4 134 48.5
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 8.1e-30 136.0 98 63.3
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 4.0e-29 133.7 95 64.2
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.6e-28 131.0 146 50.0
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 3.8e-27 127.1 130 53.1
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 6.4e-27 126.3 134 43.3
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.9e-26 124.8 99 60.6
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.1e-25 121.3 99 59.6
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.3e-24 117.9 94 56.4
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.8e-21 108.2 79 62.0
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 2.4e-21 107.8 60 73.3
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 3.1e-21 107.5 76 64.5
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 2.2e-19 101.3 112 50.0
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 2.9e-19 100.9 113 47.8
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 9.3e-18 95.9 92 53.3
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 1.6e-17 95.1 55 78.2
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.0e-16 92.4 85 57.6
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 3.9e-16 90.5 65 66.2
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 5.7e-15 86.7 79 53.2
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 1.4e-13 82.0 89 51.7
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 3.1e-13 80.9 77 54.5
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 5.3e-13 80.1 88 48.9
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 3.4e-12 77.4 64 53.1
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 4.2e-10 70.5 185 33.5
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 8.7e-08 62.8 32 78.1
Lalb_Chr18g0049241 Lupinus albus HOM05D004639 ORTHO05D005201 2.5e-07 61.2 62 50.0
MCO02G309 Micromonas commoda HOM05D004639 ORTHO05D005201 1.6e-06 58.5 166 24.7
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 4.8e-06 57.0 75 40.0
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 8.2e-06 56.2 34 64.7


User provided reference genes

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