Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc15.60 Carica papaya HOM05D004401 ORTHO05D005169 7.3e-257 890.2 497 100.0
COL.COLO4_22179 Corchorus olitorius HOM05D004401 ORTHO05D005169 5.4e-143 511.9 501 60.9
Haze_15165 Corylus avellana HOM05D004401 ORTHO05D005169 2.8e-139 499.6 498 61.8
CSS0030032 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.5e-134 482.6 491 60.9
CSS0031085 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 1.1e-132 477.6 486 61.1
RcHm_v2.0_Chr2g0103241 Rosa chinensis HOM05D004401 ORTHO05D005169 1.5e-132 477.2 488 60.7
Atru.chr3.472 Acer truncatum HOM05D004401 ORTHO05D005169 1.9e-132 476.9 479 60.8
Cfa004233 Carpinus fangiana HOM05D004401 ORTHO05D005169 2.5e-132 476.5 496 60.7
Ciclev10025507m.g Citrus clementina HOM05D004401 ORTHO05D005169 4.3e-132 475.7 488 60.2
FvH4_1g14490 Fragaria vesca HOM05D004401 ORTHO05D005169 6.2e-131 471.9 493 59.2
QL06p044258 Quercus lobata HOM05D004401 ORTHO05D005169 1.8e-130 470.3 499 58.9
Dinv39923 Davidia involucrata HOM05D004401 ORTHO05D005169 4.0e-130 469.2 481 59.5
FAN19G2756 Fragaria x ananassa HOM05D004401 ORTHO05D005169 6.9e-130 468.4 493 59.0
Hma1.2p1_0739F.1_g211280 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 1.5e-129 467.2 483 59.8
Manes.13G132200 Manihot esculenta HOM05D004401 ORTHO05D005169 8.4e-128 461.5 501 58.7
Duzib147G0010 Durio zibethinus HOM05D004401 ORTHO05D005169 1.0e-125 454.5 516 56.0
Prupe.7G145400 Prunus persica HOM05D004401 ORTHO05D005169 2.5e-124 449.9 465 60.0
Potri.007G034200 Populus trichocarpa HOM05D004401 ORTHO05D005169 1.6e-123 447.2 487 57.3
Potri.005G130800 Populus trichocarpa HOM05D004401 ORTHO05D005169 2.1e-123 446.8 495 57.0
RhsimUnG0212100 Rhododendron simsii HOM05D004401 ORTHO05D005169 2.8e-123 446.4 482 58.3
Gohir.D03G018900 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-122 444.1 496 57.3
Gohir.D11G048500 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.4e-122 444.1 494 56.5
Nitab4.5_0000108g0170 Nicotiana tabacum HOM05D004401 ORTHO05D005169 1.4e-122 444.1 484 57.6
Gorai.003G019300 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.4e-122 443.4 496 57.1
Gohir.A02G161600 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.0e-120 438.0 496 56.7
MD02G1158400 Malus domestica HOM05D004401 ORTHO05D005169 5.0e-120 435.6 468 60.7
Nitab4.5_0005594g0020 Nicotiana tabacum HOM05D004401 ORTHO05D005169 6.5e-120 435.3 484 57.0
TWI73G0228 Tripterygium wilfordii HOM05D004401 ORTHO05D005169 8.5e-120 434.9 500 56.0
Duzib264G0051 Durio zibethinus HOM05D004401 ORTHO05D005169 1.4e-119 434.1 500 55.4
Actinidia12088 Actinidia chinensis HOM05D004401 ORTHO05D005169 9.3e-119 431.4 481 56.8
CiPaw.01G029200 Carya illinoinensis HOM05D004401 ORTHO05D005169 9.3e-119 431.4 493 54.8
Hma1.2p1_0261F.1_g104910 Hydrangea macrophylla HOM05D004401 ORTHO05D005169 2.7e-118 429.9 487 56.7
MD15G1273200 Malus domestica HOM05D004401 ORTHO05D005169 7.9e-118 428.3 497 56.9
PGSC0003DMG400010033 Solanum tuberosum HOM05D004401 ORTHO05D005169 1.8e-117 427.2 482 56.0
Gorai.007G052100 Gossypium raimondii HOM05D004401 ORTHO05D005169 2.3e-117 426.8 494 55.1
Carub.0007s0340 Capsella rubella HOM05D004401 ORTHO05D005169 6.7e-117 425.2 513 55.6
Sed0006552 Sechium edule HOM05D004401 ORTHO05D005169 1.5e-116 424.1 504 55.6
BolC3t20224H Brassica oleracea HOM05D004401 ORTHO05D005169 2.5e-116 423.3 525 54.5
Hund14120 Selenicereus undatus HOM05D004401 ORTHO05D005169 3.3e-116 422.9 483 56.5
Sabra07G0029800 Salix brachista HOM05D004401 ORTHO05D005169 9.7e-116 421.4 515 53.4
Gohir.A11G045000 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.3e-115 421.0 495 54.5
Peaxi162Scf00535g00620 Petunia axillaris HOM05D004401 ORTHO05D005169 1.6e-115 420.6 485 56.3
Sopen02g034780 Solanum pennellii HOM05D004401 ORTHO05D005169 1.6e-115 420.6 487 54.8
THA.LOC104807569 Tarenaya hassleriana HOM05D004401 ORTHO05D005169 2.2e-115 420.2 512 55.9
Solyc02g090090.3 Solanum lycopersicum HOM05D004401 ORTHO05D005169 6.3e-115 418.7 482 54.8
ClCG02G013050 Citrullus lanatus HOM05D004401 ORTHO05D005169 2.4e-114 416.8 507 56.4
PGR102G2627 Punica granatum HOM05D004401 ORTHO05D005169 2.4e-114 416.8 504 57.5
FAN23G0479 Fragaria x ananassa HOM05D004401 ORTHO05D005169 4.1e-114 416.0 500 55.0
TPR.G29860 Trifolium pratense HOM05D004401 ORTHO05D005169 3.4e-113 412.9 495 53.9
FAN26G1141 Fragaria x ananassa HOM05D004401 ORTHO05D005169 7.7e-113 411.8 500 54.8
MSTRG.15405 Avicennia marina HOM05D004401 ORTHO05D005169 1.0e-112 411.4 488 54.1
CAN.G836.19 Capsicum annuum HOM05D004401 ORTHO05D005169 5.0e-112 409.1 493 54.0
FAN28G2641 Fragaria x ananassa HOM05D004401 ORTHO05D005169 5.0e-112 409.1 495 54.7
Eucgr.H01940 Eucalyptus grandis HOM05D004401 ORTHO05D005169 3.2e-111 406.4 425 59.8
CARHR245290 Cardamine hirsuta HOM05D004401 ORTHO05D005169 1.6e-110 404.1 517 54.0
BraA08t34203Z Brassica rapa HOM05D004401 ORTHO05D005169 3.9e-109 399.4 512 52.9
Thecc.01G045700 Theobroma cacao HOM05D004401 ORTHO05D005169 3.9e-109 399.4 499 53.9
Ca_24810_v3 Cicer arietinum L. HOM05D004401 ORTHO05D005169 5.1e-109 399.1 504 51.4
Glyma.11G061000 Glycine max HOM05D004401 ORTHO05D005169 5.1e-109 399.1 492 52.2
Cc07_g05390 Coffea canephora HOM05D004401 ORTHO05D005169 6.7e-109 398.7 470 54.3
Migut.K00842 Erythranthe guttata HOM05D004401 ORTHO05D005169 2.6e-108 396.7 483 53.4
Lalb_Chr05g0213081 Lupinus albus HOM05D004401 ORTHO05D005169 1.3e-107 394.4 492 53.3
Thhalv10025057m.g Eutrema salsugineum HOM05D004401 ORTHO05D005169 2.2e-107 393.7 504 53.6
Glyma.01G181200 Glycine max HOM05D004401 ORTHO05D005169 2.2e-107 393.7 492 51.8
C03p79770 Brassica napus HOM05D004401 ORTHO05D005169 8.2e-107 391.7 512 53.1
AL7G14010 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 9.1e-106 388.3 511 52.3
Medtr5g018600 Medicago truncatula HOM05D004401 ORTHO05D005169 9.1e-106 388.3 496 52.0
CSS0031753 Camellia sinensis var. sinensis HOM05D004401 ORTHO05D005169 3.4e-105 386.3 364 63.2
A08p22480 Brassica napus HOM05D004401 ORTHO05D005169 1.0e-104 384.8 529 50.5
arahy.Tifrunner.gnm1.ann1.6IB1GK Arachis hypogaea HOM05D004401 ORTHO05D005169 5.0e-104 382.5 534 50.2
MELO3C020916.2 Cucumis melo HOM05D004401 ORTHO05D005169 1.4e-103 380.9 504 53.4
vmacro05286 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 3.2e-103 379.8 586 46.2
Lalb_Chr09g0322851 Lupinus albus HOM05D004401 ORTHO05D005169 3.6e-102 376.3 490 52.4
EL10Ac6g14845 Beta vulgaris HOM05D004401 ORTHO05D005169 4.7e-102 375.9 499 49.3
Gorai.007G208200 Gossypium raimondii HOM05D004401 ORTHO05D005169 4.7e-102 375.9 487 53.6
SalBow1G0657 Salvia bowleyana HOM05D004401 ORTHO05D005169 1.4e-101 374.4 482 52.5
CANSAT01G2530 Cannabis sativa HOM05D004401 ORTHO05D005169 2.3e-101 373.6 498 51.8
SalBow1G3467 Salvia bowleyana HOM05D004401 ORTHO05D005169 2.3e-101 373.6 482 52.5
Sc03g0001200 Simmondsia chinensis HOM05D004401 ORTHO05D005169 5.2e-101 372.5 383 58.2
Nn6g32163 Nelumbo nucifera HOM05D004401 ORTHO05D005169 1.1e-100 371.3 444 54.7
Phvul.002G023700 Phaseolus vulgaris HOM05D004401 ORTHO05D005169 1.3e-99 367.9 498 51.0
VMungo1215G0638 Vigna mungo HOM05D004401 ORTHO05D005169 1.3e-99 367.9 495 49.3
AT4G37210 Arabidopsis thaliana HOM05D004401 ORTHO05D005169 1.7e-99 367.5 436 55.3
CsaV3_2G017130 Cucumis sativus L. HOM05D004401 ORTHO05D005169 2.2e-99 367.1 505 51.3
arahy.Tifrunner.gnm1.ann1.ZW82SR Arachis hypogaea HOM05D004401 ORTHO05D005169 1.4e-98 364.4 525 48.8
TAR625G0432 Trochodendron aralioides HOM05D004401 ORTHO05D005169 4.1e-98 362.8 495 49.7
ECA232G2743 Erigeron canadensis HOM05D004401 ORTHO05D005169 1.2e-97 361.3 480 52.1
DCAR_025670 Daucus carota HOM05D004401 ORTHO05D005169 1.1e-95 354.8 506 49.4
Lj2g0012735 Lotus japonicus HOM05D004401 ORTHO05D005169 1.9e-95 354.0 505 50.1
Sed0017517 Sechium edule HOM05D004401 ORTHO05D005169 7.2e-95 352.1 448 52.9
Lj4A136G82 Lonicera japonica HOM05D004401 ORTHO05D005169 2.7e-94 350.1 482 49.4
Oeu020614.1 Olea europaea HOM05D004401 ORTHO05D005169 3.6e-94 349.7 484 49.4
PSO700G0114 Papaver somniferum HOM05D004401 ORTHO05D005169 3.6e-94 349.7 436 50.9
Rhsim08G0109400 Rhododendron simsii HOM05D004401 ORTHO05D005169 4.7e-94 349.4 498 50.2
PSO170G1133 Papaver somniferum HOM05D004401 ORTHO05D005169 3.0e-93 346.7 435 50.3
unitig_0.g2308 Utricularia gibba HOM05D004401 ORTHO05D005169 4.0e-93 346.3 484 49.8
AUR62027242 Chenopodium quinoa HOM05D004401 ORTHO05D005169 8.8e-93 345.1 495 47.9
Gohir.D11G194700 Gossypium hirsutum HOM05D004401 ORTHO05D005169 2.2e-91 340.5 474 50.8
Ah.03g142140 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.8e-91 340.1 563 42.8
GSVIVG01003774001 Vitis vinifera HOM05D004401 ORTHO05D005169 2.7e-89 333.6 345 60.0
MBI16_g31340_MAGBIO Magnolia biondii HOM05D004401 ORTHO05D005169 4.5e-89 332.8 461 48.6
C01p02190 Brassica napus HOM05D004401 ORTHO05D005169 3.8e-88 329.7 496 49.6
HanXRQChr09g0264391 Helianthus annuus HOM05D004401 ORTHO05D005169 1.6e-86 324.3 474 49.6
Sp7g34580 Schrenkiella parvula HOM05D004401 ORTHO05D005169 5.7e-84 315.8 509 48.5
Sabra05G0106000 Salix brachista HOM05D004401 ORTHO05D005169 7.5e-84 315.5 288 62.2
AUR62003232 Chenopodium quinoa HOM05D004401 ORTHO05D005169 9.8e-84 315.1 489 46.0
vmacro17880 Vaccinium macrocarpon HOM05D004401 ORTHO05D005169 1.3e-83 314.7 579 43.4
Gohir.A11G188200 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.1e-82 311.6 486 47.3
TAR381G0351 Trochodendron aralioides HOM05D004401 ORTHO05D005169 5.4e-82 309.3 499 45.9
BraA01t00189Z Brassica rapa HOM05D004401 ORTHO05D005169 7.0e-82 308.9 500 47.4
BolC1t00211H Brassica oleracea HOM05D004401 ORTHO05D005169 4.5e-81 306.2 496 47.2
HanXRQChr15g0489601 Helianthus annuus HOM05D004401 ORTHO05D005169 3.8e-80 303.1 480 47.7
Dinv26777 Davidia involucrata HOM05D004401 ORTHO05D005169 6.5e-80 302.4 247 70.4
Ah.02g126040 Amaranthus hybridus HOM05D004401 ORTHO05D005169 2.5e-79 300.4 485 43.7
Aqoxy5G01748 Aquilegia oxysepala HOM05D004401 ORTHO05D005169 1.8e-77 294.3 479 45.9
A01p02010 Brassica napus HOM05D004401 ORTHO05D005169 1.6e-73 281.2 415 50.1
CDE06G0525 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 3.5e-73 280.0 497 43.5
Lsat_1_v5_gn_4_177820 Lactuca sativa HOM05D004401 ORTHO05D005169 4.5e-73 279.6 487 44.6
Oeu032116.1 Olea europaea HOM05D004401 ORTHO05D005169 2.1e-70 270.8 268 61.9
SHI08724 Sapria himalayana HOM05D004401 ORTHO05D005169 3.0e-69 266.9 484 41.5
HPP92_019643 Vanilla planifolia HOM05D004401 ORTHO05D005169 4.4e-68 263.1 496 41.7
SGA_v2.0_scaffold62G21530 Striga asiatica HOM05D004401 ORTHO05D005169 1.6e-65 254.6 289 54.7
CDE04G2769 Ceratophyllum demersum HOM05D004401 ORTHO05D005169 1.3e-64 251.5 490 41.2
ATR0733G114 Amborella trichopoda HOM05D004401 ORTHO05D005169 1.0e-61 241.9 443 42.4
Aa31LG6G13770 Aethionema arabicum HOM05D004401 ORTHO05D005169 2.3e-53 214.2 298 53.7
Zm00001eb117930 Zea mays HOM05D004401 ORTHO05D005169 4.0e-53 213.4 427 40.0
Os07g0122400 Oryza sativa ssp. japonica HOM05D004401 ORTHO05D005169 4.9e-51 206.5 439 39.2
Pp3c24_5960 Physcomitrium patens HOM05D004401 ORTHO05D005169 1.4e-37 161.8 449 33.2
Sc07g0000190 Simmondsia chinensis HOM05D004401 ORTHO05D005169 3.1e-37 160.6 279 40.9
AagrBONN_evm.TU.Sc2ySwM_228.4759 Anthoceros agrestis HOM05D004401 ORTHO05D005169 1.5e-36 158.3 448 31.0
Sabra05G0106100 Salix brachista HOM05D004401 ORTHO05D005169 5.8e-28 129.8 193 46.1
Mapoly0080s0039 Marchantia polymorpha HOM05D004401 ORTHO05D005169 7.6e-28 129.4 402 30.6
Pp3c8_14970 Physcomitrium patens HOM05D004401 ORTHO05D005169 6.0e-25 119.8 318 33.3
Zm00001eb178920 Zea mays HOM05D004401 ORTHO05D005169 4.3e-23 113.6 198 44.9
Rhsim06G0070300 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.1e-21 109.0 158 50.6
Gohir.A12G038266 Gossypium hirsutum HOM05D004401 ORTHO05D005169 1.8e-21 108.2 87 65.5
CBR_g26200 Chara braunii HOM05D004401 ORTHO05D005169 1.5e-20 105.1 473 26.0
Zm00001eb343330 Zea mays HOM05D004401 ORTHO05D005169 1.5e-20 105.1 191 42.4
Oeu023283.1 Olea europaea HOM05D004401 ORTHO05D005169 4.9e-19 100.1 93 61.3
BcaNung03516 Brassica carinata HOM05D004401 ORTHO05D005169 3.2e-18 97.4 177 46.3
Zm00001eb130830 Zea mays HOM05D004401 ORTHO05D005169 5.5e-18 96.7 184 38.6
GSVIVG01003776001 Vitis vinifera HOM05D004401 ORTHO05D005169 3.5e-17 94.0 67 70.1
Zm00001eb250440 Zea mays HOM05D004401 ORTHO05D005169 7.4e-15 86.3 149 42.3
Zm00001eb306620 Zea mays HOM05D022290 ORTHO05D005169 1.3e-14 85.5 197 38.6
Glyma.06G250700 Glycine max HOM05D004401 ORTHO05D005169 1.6e-14 85.1 77 62.3
Zm00001eb268170 Zea mays HOM05D004401 ORTHO05D005169 2.1e-14 84.7 197 37.6
Lsat_1_v5_gn_1_2961 Lactuca sativa HOM05D004401 ORTHO05D005169 1.8e-13 81.6 177 36.7
Sc07g0000180 Simmondsia chinensis HOM05D004401 ORTHO05D005169 1.8e-13 81.6 165 40.0
Zm00001eb182160 Zea mays HOM05D004401 ORTHO05D005169 4.5e-12 77.0 108 47.2
AL2G36200 Arabidopsis lyrata HOM05D004401 ORTHO05D005169 1.3e-11 75.5 155 44.5
Psat0s4627g0080 Pisum sativum HOM05D004401 ORTHO05D005169 1.7e-11 75.1 70 60.0
Psat0s4627g0120 Pisum sativum HOM05D004401 ORTHO05D005169 6.7e-08 63.2 237 33.8
MCO16G464 Micromonas commoda HOM05D004401 ORTHO05D005169 3.3e-07 60.8 406 24.9
Zm00001eb299150 Zea mays HOM05D004401 ORTHO05D005169 7.4e-07 59.7 67 56.7
SEGI_23846 Sequoiadendron giganteum HOM05D004401 ORTHO05D005169 1.6e-06 58.5 305 28.5


User provided reference genes

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