Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.4e-195 686.0 339 100.0
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 2.1e-101 373.2 367 54.0
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 5.6e-99 365.2 348 53.4
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 7.3e-99 364.8 348 52.3
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.4e-97 359.8 349 54.2
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 2.9e-95 352.8 346 52.9
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 4.9e-95 352.1 376 51.1
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 4.9e-95 352.1 346 52.9
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.4e-94 350.5 346 52.9
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.4e-94 350.5 346 52.9
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 7.1e-94 348.2 345 51.9
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.0e-92 344.4 352 51.1
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 3.0e-92 342.8 350 51.4
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 1.1e-91 340.9 334 52.4
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 2.1e-90 336.7 333 52.9
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 4.0e-89 332.4 334 52.7
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.0e-88 330.1 339 50.4
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 9.9e-88 327.8 417 44.4
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 1.7e-87 327.0 352 50.9
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 8.4e-87 324.7 357 50.1
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.5e-83 313.9 359 48.5
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.5e-83 313.9 357 48.7
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 2.5e-83 313.2 340 48.8
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 2.8e-82 309.7 394 44.9
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 9.0e-81 304.7 344 50.0
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 5.8e-80 302.0 377 44.8
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 1.3e-79 300.8 367 45.0
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 4.9e-79 298.9 401 41.4
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 1.2e-77 294.3 374 44.7
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 1.8e-76 290.4 349 47.3
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 5.1e-76 288.9 383 41.8
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 9.6e-75 284.6 377 44.0
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 1.6e-74 283.9 400 41.8
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.8e-74 283.1 369 43.1
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 2.8e-74 283.1 290 50.3
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.4e-73 280.8 453 37.7
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.8e-73 280.4 394 41.4
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.8e-73 280.4 455 38.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 6.9e-73 278.5 310 46.5
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.0e-73 278.1 401 41.4
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.7e-71 273.9 341 44.6
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 1.7e-71 273.9 393 41.7
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 2.2e-71 273.5 418 39.0
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 6.5e-71 271.9 338 46.2
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 8.4e-71 271.6 415 38.3
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 2.5e-70 270.0 410 40.2
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 4.2e-70 269.2 444 37.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.6e-69 267.3 430 38.4
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.7e-69 266.5 428 38.3
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 6.7e-68 261.9 413 37.3
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 8.7e-68 261.5 435 37.2
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 8.7e-68 261.5 318 46.9
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.1e-67 261.2 456 36.6
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 5.7e-67 258.8 434 37.8
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 5.7e-67 258.8 413 36.6
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 9.7e-67 258.1 261 51.3
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.3e-66 257.7 270 50.7
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 1.6e-66 257.3 485 36.5
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 6.3e-66 255.4 456 35.1
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 6.3e-66 255.4 365 40.5
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 8.2e-66 255.0 410 39.0
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 1.1e-65 254.6 441 36.1
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 1.1e-65 254.6 429 37.1
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 1.1e-65 254.6 269 50.6
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 1.4e-65 254.2 439 36.7
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.8e-65 253.8 342 43.9
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 6.9e-65 251.9 431 35.5
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 6.9e-65 251.9 274 48.5
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 6.9e-65 251.9 439 36.0
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 1.5e-64 250.8 463 35.4
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 2.0e-64 250.4 452 36.3
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 2.6e-64 250.0 448 36.2
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 4.5e-64 249.2 264 50.4
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.0e-63 248.1 435 38.2
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.7e-63 247.3 392 37.2
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.7e-63 247.3 392 37.2
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.2e-63 246.9 442 37.1
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 2.2e-63 246.9 419 35.3
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 5.0e-63 245.7 433 37.4
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 1.1e-62 244.6 296 43.6
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.1e-62 244.6 416 37.3
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 2.5e-62 243.4 370 40.3
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.5e-62 243.4 438 35.2
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 7.2e-62 241.9 440 36.1
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 1.6e-61 240.7 410 36.8
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 7.9e-61 238.4 262 47.3
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 7.9e-61 238.4 347 40.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 6.7e-60 235.3 442 35.5
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 8.8e-60 235.0 273 46.2
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 3.3e-59 233.0 295 43.4
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 9.7e-59 231.5 452 34.7
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.7e-58 229.6 321 43.9
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 4.1e-57 226.1 286 45.1
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 6.9e-57 225.3 449 35.0
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 1.2e-56 224.6 423 35.0
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.5e-56 224.2 424 36.3
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 2.6e-56 223.4 352 39.8
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 4.5e-56 222.6 437 35.5
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 3.8e-55 219.5 213 53.1
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 3.8e-55 219.5 213 53.1
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 2.5e-54 216.9 464 33.2
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 3.2e-54 216.5 270 45.9
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.2e-54 215.3 236 47.5
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 7.2e-54 215.3 448 35.5
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.4e-54 214.9 302 42.4
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.6e-53 214.2 333 40.5
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 6.1e-53 212.2 286 44.4
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 2.0e-51 207.2 271 43.2
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 7.4e-51 205.3 462 32.5
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 4.1e-49 199.5 288 41.7
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 1.3e-47 194.5 319 38.2
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.1e-45 187.2 262 42.7
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 2.7e-45 186.8 152 61.2
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 3.6e-45 186.4 137 67.9
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 8.0e-45 185.3 262 43.1
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.0e-44 184.9 137 67.2
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 5.2e-44 182.6 197 48.7
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 4.4e-43 179.5 373 33.2
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.3e-42 177.9 379 33.0
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 2.8e-42 176.8 300 38.3
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 4.1e-41 172.9 202 45.5
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 3.5e-40 169.9 415 31.8
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 3.5e-40 169.9 221 44.8
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 2.7e-37 160.2 200 43.5
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 4.4e-35 152.9 159 45.9
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 7.0e-33 145.6 126 57.9
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 5.9e-32 142.5 221 39.4
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 7.7e-32 142.1 296 32.4
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 2.9e-31 140.2 146 48.6
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 2.7e-29 133.7 138 50.7
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 6.3e-26 122.5 132 47.0
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.4e-25 120.6 99 54.5
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 5.4e-25 119.4 118 44.9
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.7e-24 117.1 213 35.2
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.4e-20 104.8 217 33.6
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 3.0e-20 103.6 140 39.3
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.5e-19 101.3 121 41.3
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.7e-18 97.8 147 38.1
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.2e-18 97.4 113 49.6
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 6.3e-18 95.9 178 35.4
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-16 91.7 176 31.8
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 5.8e-11 72.8 115 35.7
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 1.1e-09 68.6 104 38.5
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 5.6e-06 56.2 50 52.0
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 9.5e-06 55.5 42 61.9


User provided reference genes

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