Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 5.2e-226 787.3 386 100.0
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 4.2e-82 309.3 195 77.9
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 3.5e-81 306.2 195 77.9
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 6.6e-80 302.0 210 72.4
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 8.7e-80 301.6 210 71.9
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 8.7e-80 301.6 183 79.8
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 8.7e-80 301.6 214 70.1
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 1.1e-79 301.2 212 73.1
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 1.9e-79 300.4 183 79.2
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 2.5e-79 300.1 183 79.8
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.3e-79 299.3 210 71.9
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.3e-79 299.3 210 71.9
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 4.3e-79 299.3 210 71.4
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 5.6e-79 298.9 214 69.2
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 1.3e-78 297.7 210 71.0
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.3e-78 297.7 210 71.0
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 2.1e-78 297.0 184 79.3
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 2.1e-78 297.0 210 69.0
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 4.8e-78 295.8 210 70.5
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 4.8e-78 295.8 184 78.8
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 6.2e-78 295.4 184 77.7
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.1e-78 295.0 196 76.0
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.1e-77 294.7 210 70.5
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 1.4e-77 294.3 214 67.3
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 1.8e-77 293.9 185 80.0
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 1.8e-77 293.9 210 71.4
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 3.1e-77 293.1 209 69.9
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 4.0e-77 292.7 204 71.1
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.0e-77 292.7 210 70.5
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 4.0e-77 292.7 210 70.5
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 5.3e-77 292.4 184 76.6
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 9.0e-77 291.6 204 72.1
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 1.2e-76 291.2 204 71.6
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 1.2e-76 291.2 210 70.5
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.0e-76 290.4 204 72.1
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 2.6e-76 290.0 214 66.8
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 5.8e-76 288.9 221 69.2
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 7.6e-76 288.5 196 71.4
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.3e-75 287.7 185 75.1
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 1.3e-75 287.7 210 68.1
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 1.3e-75 287.7 184 75.0
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 2.2e-75 287.0 184 75.5
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 2.9e-75 286.6 204 68.6
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 3.8e-75 286.2 204 70.1
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 3.8e-75 286.2 203 71.9
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 4.9e-75 285.8 221 68.3
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 4.9e-75 285.8 185 76.8
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 6.4e-75 285.4 204 70.6
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 2.4e-74 283.5 184 75.5
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 7.1e-74 282.0 209 65.6
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.2e-73 281.2 184 74.5
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.2e-73 281.2 184 75.0
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 2.1e-73 280.4 189 71.4
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 1.0e-72 278.1 204 67.6
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 3.0e-72 276.6 184 74.5
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 8.7e-72 275.0 184 72.8
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 8.7e-72 275.0 209 66.0
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.9e-71 273.9 170 77.6
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 5.6e-71 272.3 204 66.7
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 7.4e-71 271.9 204 65.7
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 3.7e-70 269.6 204 64.7
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 4.8e-70 269.2 211 65.4
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 1.4e-69 267.7 204 64.7
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.8e-69 267.3 211 64.5
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 1.8e-69 267.3 185 72.4
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 6.9e-69 265.4 211 63.0
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 6.9e-69 265.4 183 72.7
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.2e-68 264.6 177 72.3
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.0e-68 263.8 183 71.0
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 2.6e-68 263.5 210 63.3
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 4.5e-68 262.7 204 68.1
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 2.2e-67 260.4 177 70.6
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 2.9e-67 260.0 210 60.5
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 8.4e-67 258.5 216 62.5
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 5.5e-66 255.8 206 64.1
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 1.2e-65 254.6 185 68.1
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 2.7e-65 253.4 183 67.2
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 4.6e-65 252.7 185 68.1
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 7.9e-65 251.9 185 67.0
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.3e-64 251.1 185 67.6
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 3.9e-64 249.6 189 64.0
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 8.7e-64 248.4 185 66.5
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.5e-63 247.7 185 66.5
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 4.3e-63 246.1 210 62.4
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 4.3e-63 246.1 204 59.8
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 2.8e-62 243.4 145 78.6
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 4.8e-62 242.7 185 65.9
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 4.8e-62 242.7 185 65.9
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 4.8e-62 242.7 185 65.9
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 4.8e-62 242.7 185 65.9
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 6.2e-62 242.3 185 65.9
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 8.2e-62 241.9 145 77.9
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 2.4e-61 240.4 185 65.4
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 4.5e-60 236.1 224 52.2
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 4.2e-58 229.6 210 61.4
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 4.6e-57 226.1 186 57.5
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 3.9e-56 223.0 213 52.6
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 2.2e-54 217.2 177 63.8
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 1.6e-41 174.5 146 66.4
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 3.7e-38 163.3 216 45.4
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 1.6e-28 131.3 164 45.7
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 2.2e-27 127.5 199 37.7
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 1.6e-25 121.3 232 33.2
Cpa.g.sc245.14 Carica papaya HOM05D008736 ORTHO05D010193 1.4e-24 118.2 204 36.3
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.2e-22 110.9 198 36.9
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 1.1e-21 108.6 83 63.9
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.6e-20 104.8 95 45.3
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 2.0e-20 104.4 202 35.1
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 2.0e-20 104.4 121 43.8
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 4.5e-20 103.2 213 30.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 2.2e-19 100.9 186 39.8
Cpa.g.sc25.168 Carica papaya HOM05D008736 ORTHO05D010193 8.8e-16 89.0 199 31.2
Cpa.g.sc2.217 Carica papaya HOM05D008736 ORTHO05D010193 2.6e-15 87.4 163 35.0
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 6.3e-14 82.8 79 45.6
Cpa.g.sc32.153 Carica papaya HOM05D008736 ORTHO05D010193 3.1e-13 80.5 121 37.2
Cpa.g.sc10.110 Carica papaya HOM05D008736 ORTHO05D010193 4.1e-13 80.1 131 35.1
Cpa.g.sc462.4 Carica papaya HOM05D000555 ORTHO05D010193 4.1e-13 80.1 176 32.4
Cpa.g.sc24.83 Carica papaya HOM05D014745 ORTHO05D007143 2.0e-12 77.8 101 37.6
Cpa.g.sc146.60 Carica papaya HOM05D001092 ORTHO05D010193 3.5e-12 77.0 119 37.8
Cpa.g.sc205.22 Carica papaya HOM05D008736 ORTHO05D010193 1.3e-11 75.1 97 45.4
Cpa.g.sc20.217 Carica papaya HOM05D000564 ORTHO05D010193 5.0e-11 73.2 191 28.3
Cpa.g.sc39.14 Carica papaya HOM05D014745 ORTHO05D010193 5.0e-11 73.2 117 37.6
Cpa.g.sc40.8 Carica papaya HOM05D008736 ORTHO05D010193 5.5e-10 69.7 106 38.7
Cpa.g.sc74.30 Carica papaya HOM05D000003 ORTHO05D000006 5.5e-10 69.7 100 45.0
Cpa.g.sc34.7 Carica papaya HOM05D008736 ORTHO05D010193 7.2e-10 69.3 129 34.1
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 9.5e-10 68.9 41 70.7
Cpa.g.c44697.1 Carica papaya HOM05D008736 ORTHO05D010193 1.2e-09 68.6 100 36.0
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 1.6e-09 68.2 41 70.7
Cpa.g.sc111.38 Carica papaya HOM05D008736 ORTHO05D010193 2.1e-09 67.8 124 37.9
Cpa.g.sc96.61 Carica papaya HOM05D035046 ORTHO05D000006 3.6e-09 67.0 116 31.0
Cpa.g.sc25.153 Carica papaya HOM05D014745 ORTHO05D010193 4.7e-09 66.6 119 34.5
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 4.7e-09 66.6 110 35.5
Cpa.g.sc33.115 Carica papaya HOM05D008736 ORTHO05D010193 6.1e-09 66.2 150 32.7
Cpa.g.c41516 Carica papaya HOM05D013729 ORTHO05D010193 1.0e-08 65.5 116 35.3
Cpa.g.sc5162.1 Carica papaya HOM05D019902 ORTHO05D010193 2.3e-08 64.3 208 27.9
Cpa.g.sc46.93 Carica papaya HOM05D008736 ORTHO05D010193 4.0e-08 63.5 106 35.8
Cpa.g.sc66.107 Carica papaya HOM05D008736 ORTHO05D010193 4.0e-08 63.5 184 25.5
Cpa.g.sc30.108 Carica papaya HOM05D003515 ORTHO05D010193 1.2e-07 62.0 177 29.9
Cpa.g.sc138.24 Carica papaya HOM05D000003 ORTHO05D000006 2.0e-07 61.2 104 36.5
Cpa.g.c40706 Carica papaya HOM05D008736 ORTHO05D010193 3.4e-07 60.5 102 36.3
Cpa.g.sc24.84 Carica papaya HOM05D008736 ORTHO05D010193 5.7e-07 59.7 47 57.4
Cpa.g.sc91.74 Carica papaya HOM05D008736 ORTHO05D010193 5.7e-07 59.7 120 30.0
Cpa.g.sc63.45 Carica papaya HOM05D008736 ORTHO05D010193 7.5e-07 59.3 169 26.6
Cpa.g.sc2.312 Carica papaya HOM05D015429 ORTHO05D010193 2.2e-06 57.8 55 49.1
Cpa.g.sc61.13 Carica papaya HOM05D008736 ORTHO05D010193 2.2e-06 57.8 54 48.1
Cpa.g.c31806.2 Carica papaya HOM05D008736 ORTHO05D010193 6.3e-06 56.2 54 48.1


User provided reference genes

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