Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc148.31 Carica papaya HOM05D002759 ORTHO05D003290 0.0e+00 1537.7 769 100.0
Atru.chr6.1027 Acer truncatum HOM05D002759 ORTHO05D003290 4.2e-203 712.2 821 48.6
Atru.chr6.1078 Acer truncatum HOM05D002759 ORTHO05D003290 2.0e-200 703.4 818 48.0
Haze_21022 Corylus avellana HOM05D002759 ORTHO05D003290 2.2e-199 699.9 832 47.6
Cfa017189 Carpinus fangiana HOM05D002759 ORTHO05D003290 1.7e-196 690.3 832 47.5
CiPaw.05G042600 Carya illinoinensis HOM05D002759 ORTHO05D003290 1.1e-190 671.0 826 47.6
Prupe.1G563000 Prunus persica HOM05D002759 ORTHO05D003290 1.8e-190 670.2 836 45.8
Dinv24260 Davidia involucrata HOM05D002759 ORTHO05D003290 3.5e-189 666.0 834 47.2
Ciclev10000008m.g Citrus clementina HOM05D002759 ORTHO05D003290 7.3e-187 658.3 821 47.3
Potri.003G021700 Populus trichocarpa HOM05D002759 ORTHO05D003290 1.3e-183 647.5 818 45.5
QL02p098685 Quercus lobata HOM05D002759 ORTHO05D003290 2.4e-182 643.3 899 43.0
Thecc.02G041500 Theobroma cacao HOM05D002759 ORTHO05D003290 2.7e-181 639.8 837 44.6
TWI59G0497 Tripterygium wilfordii HOM05D002759 ORTHO05D003290 1.9e-179 633.6 835 45.3
MD00G1166400 Malus domestica HOM05D002759 ORTHO05D003290 4.3e-179 632.5 836 45.1
GSVIVG01023021001 Vitis vinifera HOM05D002759 ORTHO05D003290 2.8e-178 629.8 830 44.2
CSS0015736 Camellia sinensis var. sinensis HOM05D002759 ORTHO05D003290 3.6e-178 629.4 836 43.4
RcHm_v2.0_Chr7g0222331 Rosa chinensis HOM05D002759 ORTHO05D003290 6.4e-175 618.6 836 43.7
Duzib052G0069 Durio zibethinus HOM05D002759 ORTHO05D003290 2.4e-174 616.7 824 43.7
Manes.07G013200 Manihot esculenta HOM05D002759 ORTHO05D003290 7.1e-174 615.1 826 44.2
FAN16G3014 Fragaria x ananassa HOM05D002759 ORTHO05D003290 4.7e-170 602.4 830 43.4
FAN11G2638 Fragaria x ananassa HOM05D002759 ORTHO05D003290 2.4e-169 600.1 833 43.8
FvH4_3g35420 Fragaria vesca HOM05D002759 ORTHO05D003290 4.0e-169 599.4 833 43.8
COL.COLO4_08439 Corchorus olitorius HOM05D002759 ORTHO05D003290 1.5e-168 597.4 834 43.2
Sabra03G0013600 Salix brachista HOM05D002759 ORTHO05D003290 7.6e-168 595.1 821 43.8
CANSAT11G0811 Cannabis sativa HOM05D002759 ORTHO05D003290 2.9e-167 593.2 823 41.3
Thhalv10024187m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 5.4e-166 589.0 824 43.2
Aa31LG6G5020 Aethionema arabicum HOM05D002759 ORTHO05D003290 7.8e-165 585.1 847 42.5
Actinidia39057 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.1e-163 581.3 837 41.5
THA.LOC104814230 Tarenaya hassleriana HOM05D002759 ORTHO05D003290 8.1e-162 575.1 821 42.9
Rhsim11G0131800 Rhododendron simsii HOM05D002759 ORTHO05D003290 1.1e-161 574.7 831 42.0
Sed0002146 Sechium edule HOM05D002759 ORTHO05D003290 6.9e-161 572.0 829 41.9
TAR381G0620 Trochodendron aralioides HOM05D002759 ORTHO05D003290 5.8e-160 568.9 840 41.5
AT4G22970 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 2.2e-159 567.0 819 41.9
Sp7g21060 Schrenkiella parvula HOM05D002759 ORTHO05D003290 1.9e-158 563.9 826 42.6
AL7G30550 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 2.1e-157 560.5 836 42.0
C07p52320 Brassica napus HOM05D002759 ORTHO05D003290 2.7e-157 560.1 818 42.1
BolC7t45725H Brassica oleracea HOM05D002759 ORTHO05D003290 4.6e-157 559.3 819 42.0
FAN25G1732 Fragaria x ananassa HOM05D002759 ORTHO05D003290 6.0e-157 558.9 833 41.2
Carub.0007s1830 Capsella rubella HOM05D002759 ORTHO05D003290 1.9e-155 553.9 832 41.5
BcaC09g51048 Brassica carinata HOM05D002759 ORTHO05D003290 2.5e-155 553.5 823 41.6
BolC1t01691H Brassica oleracea HOM05D002759 ORTHO05D003290 3.3e-155 553.1 824 41.5
A01p14240 Brassica napus HOM05D002759 ORTHO05D003290 4.3e-155 552.7 820 41.7
C01p17510 Brassica napus HOM05D002759 ORTHO05D003290 4.8e-154 549.3 821 41.3
Lj9C311G18 Lonicera japonica HOM05D002759 ORTHO05D003290 6.2e-154 548.9 793 43.6
BraA01t01371Z Brassica rapa HOM05D002759 ORTHO05D003290 1.8e-153 547.4 821 41.3
Gorai.002G207900 Gossypium raimondii HOM05D002759 ORTHO05D003290 3.4e-152 543.1 842 41.0
ClCG08G010020 Citrullus lanatus HOM05D002759 ORTHO05D003290 5.8e-152 542.3 828 40.9
Lj6g0007416 Lotus japonicus HOM05D002759 ORTHO05D003290 2.4e-150 537.0 822 39.7
A03p53910 Brassica napus HOM05D002759 ORTHO05D003290 4.2e-150 536.2 823 40.2
BraA03t14460Z Brassica rapa HOM05D002759 ORTHO05D003290 4.2e-150 536.2 824 40.2
CsaV3_6G032190 Cucumis sativus L. HOM05D002759 ORTHO05D003290 5.4e-150 535.8 840 39.6
Lsat_1_v5_gn_5_109460 Lactuca sativa HOM05D002759 ORTHO05D003290 3.9e-148 529.6 804 39.1
Glyma.15G048100 Glycine max HOM05D002759 ORTHO05D003290 6.7e-148 528.9 822 38.6
Nn5g28049 Nelumbo nucifera HOM05D002759 ORTHO05D003290 2.5e-147 526.9 816 39.8
Glyma.08G184200 Glycine max HOM05D002759 ORTHO05D003290 5.6e-147 525.8 822 38.4
MELO3C011463.2 Cucumis melo HOM05D002759 ORTHO05D003290 7.4e-147 525.4 827 39.3
BcaNung01007 Brassica carinata HOM05D002759 ORTHO05D003290 9.6e-147 525.0 822 40.1
Lalb_Chr20g0123401 Lupinus albus HOM05D002759 ORTHO05D003290 3.7e-146 523.1 822 40.3
DCAR_005626 Daucus carota HOM05D002759 ORTHO05D003290 4.5e-144 516.2 812 39.8
PGR042G2027 Punica granatum HOM05D002759 ORTHO05D003290 2.2e-143 513.8 811 38.6
Psat1g219920 Pisum sativum HOM05D002759 ORTHO05D003290 3.8e-143 513.1 825 38.2
Phvul.006G212401 Phaseolus vulgaris HOM05D002759 ORTHO05D003290 1.1e-142 511.5 817 38.3
arahy.Tifrunner.gnm1.ann1.YVTC7U Arachis hypogaea HOM05D002759 ORTHO05D003290 7.1e-142 508.8 822 39.2
Thhalv10029518m.g Eutrema salsugineum HOM05D002759 ORTHO05D003290 9.3e-142 508.4 833 38.9
ECA234G1843 Erigeron canadensis HOM05D002759 ORTHO05D003290 1.2e-141 508.1 814 39.6
Medtr2g007790 Medicago truncatula HOM05D002759 ORTHO05D003290 4.6e-141 506.1 830 38.2
MD15G1418900 Malus domestica HOM05D002759 ORTHO05D003290 3.9e-140 503.1 676 44.2
CAN.G1352.21 Capsicum annuum HOM05D002759 ORTHO05D003290 1.3e-138 498.0 819 38.2
arahy.Tifrunner.gnm1.ann1.VDG0KY Arachis hypogaea HOM05D002759 ORTHO05D003290 4.8e-138 496.1 820 38.5
Lj1g0017629 Lotus japonicus HOM05D002759 ORTHO05D003290 4.8e-138 496.1 829 38.1
Nitab4.5_0005539g0020 Nicotiana tabacum HOM05D002759 ORTHO05D003290 4.0e-137 493.0 819 37.1
Nitab4.5_0004005g0050 Nicotiana tabacum HOM05D002759 ORTHO05D003290 1.5e-136 491.1 819 36.8
Medtr7g023120 Medicago truncatula HOM05D002759 ORTHO05D003290 1.1e-134 485.0 819 37.4
Peaxi162Scf00011g00138 Petunia axillaris HOM05D002759 ORTHO05D003290 9.3e-134 481.9 821 37.0
Ca_00091_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.1e-132 476.1 819 37.5
Ca_29930_v3 Cicer arietinum L. HOM05D002759 ORTHO05D003290 5.1e-132 476.1 819 37.5
TPR.G2149 Trifolium pratense HOM05D002759 ORTHO05D003290 1.1e-131 474.9 850 37.1
HanXRQChr10g0290421 Helianthus annuus HOM05D002759 ORTHO05D003290 1.9e-131 474.2 820 38.2
Eucgr.G00634 Eucalyptus grandis HOM05D002759 ORTHO05D003290 1.3e-127 461.5 823 37.4
Oeu008876.1 Olea europaea HOM05D002759 ORTHO05D003290 2.5e-126 457.2 833 36.5
Sopen01g046990 Solanum pennellii HOM05D002759 ORTHO05D003290 1.6e-125 454.5 819 36.0
Solyc01g104490.3 Solanum lycopersicum HOM05D002759 ORTHO05D003290 2.3e-124 450.7 819 35.9
BcaB05g23798 Brassica carinata HOM05D002759 ORTHO05D003290 1.5e-123 448.0 846 35.7
Sc19g0000800 Simmondsia chinensis HOM05D002759 ORTHO05D003290 9.1e-121 438.7 619 40.2
Cc02_g22260 Coffea canephora HOM05D002759 ORTHO05D003290 1.1e-118 431.8 808 35.1
PSO170G2118 Papaver somniferum HOM05D002759 ORTHO05D003290 1.2e-117 428.3 820 35.7
PSO528G0214 Papaver somniferum HOM05D002759 ORTHO05D003290 6.1e-117 426.0 819 35.3
FAN08G3490 Fragaria x ananassa HOM05D002759 ORTHO05D003290 1.8e-113 414.5 821 34.7
SGA_v2.0_scaffold110G31284 Striga asiatica HOM05D002759 ORTHO05D003290 4.5e-112 409.8 826 34.6
RcHm_v2.0_Chr7g0177921 Rosa chinensis HOM05D002759 ORTHO05D003290 6.5e-111 406.0 796 36.3
CARHR230010 Cardamine hirsuta HOM05D002759 ORTHO05D003290 2.0e-107 394.4 522 45.8
SalBow5G5260 Salvia bowleyana HOM05D002759 ORTHO05D003290 1.8e-105 387.9 769 34.7
Migut.B00666 Erythranthe guttata HOM05D002759 ORTHO05D003290 2.2e-103 380.9 828 34.2
EL10Ac3g05252 Beta vulgaris HOM05D002759 ORTHO05D003290 5.0e-103 379.8 816 32.0
AUR62035559 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.4e-100 371.7 808 33.3
BcaB02g09105 Brassica carinata HOM05D002759 ORTHO05D003290 8.8e-100 369.0 869 32.9
C04p07370 Brassica napus HOM05D002759 ORTHO05D003290 5.7e-99 366.3 841 32.7
BcaC02g11623 Brassica carinata HOM05D002759 ORTHO05D003290 1.2e-96 358.6 845 32.7
Gohir.D01G167432 Gossypium hirsutum HOM05D002759 ORTHO05D003290 5.9e-96 356.3 494 43.9
BolC4t22942H Brassica oleracea HOM05D002759 ORTHO05D003290 1.0e-95 355.5 840 32.5
Aqoxy3G00692 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 1.7e-95 354.8 826 32.9
C04p13030 Brassica napus HOM05D002759 ORTHO05D003290 1.4e-92 345.1 842 32.4
AUR62006068 Chenopodium quinoa HOM05D002759 ORTHO05D003290 1.2e-91 342.0 747 33.1
Aqoxy7G02142 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 5.9e-88 329.7 816 31.7
Hund11642 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.9e-86 324.7 839 30.6
Hund21015 Selenicereus undatus HOM05D002759 ORTHO05D003290 6.1e-85 319.7 784 31.9
ATR0661G443 Amborella trichopoda HOM05D002759 ORTHO05D003290 1.4e-84 318.5 837 30.3
MD08G1226100 Malus domestica HOM05D002759 ORTHO05D003290 8.6e-79 299.3 449 40.1
Ah.07g205390 Amaranthus hybridus HOM05D002759 ORTHO05D003290 9.5e-78 295.8 645 33.2
SHI26607 Sapria himalayana HOM05D002759 ORTHO05D003290 1.5e-75 288.5 586 36.5
BolC4t22359H Brassica oleracea HOM05D002759 ORTHO05D003290 7.0e-73 279.6 541 36.8
Zm00001eb193470 Zea mays HOM05D002759 ORTHO05D003290 8.9e-68 262.7 645 31.9
Aqoxy3G00698 Aquilegia oxysepala HOM05D002759 ORTHO05D003290 2.3e-60 238.0 519 33.1
Atru.chr12.1442 Acer truncatum HOM05D002759 ORTHO05D003290 1.5e-59 235.3 750 30.0
Gohir.A01G176601 Gossypium hirsutum HOM05D002759 ORTHO05D003290 8.1e-53 213.0 203 53.2
SEGI_09272 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 7.6e-51 206.5 456 31.1
Gohir.A01G176651 Gossypium hirsutum HOM05D002759 ORTHO05D003290 1.4e-44 185.7 315 39.7
Oeu043988.1 Olea europaea HOM05D002759 ORTHO05D003290 2.4e-44 184.9 518 30.9
CARHR222380 Cardamine hirsuta HOM05D002759 ORTHO05D003290 5.4e-41 173.7 175 50.3
HPP92_009112 Vanilla planifolia HOM05D002759 ORTHO05D003290 3.5e-40 171.0 758 25.7
unitig_26.g9018 Utricularia gibba HOM05D002759 ORTHO05D003290 1.9e-38 165.2 416 31.2
CDE09G0711 Ceratophyllum demersum HOM05D002759 ORTHO05D003290 8.1e-37 159.8 428 31.8
VMungo0251G3589 Vigna mungo HOM05D002759 ORTHO05D003290 5.3e-36 157.1 285 35.4
AagrBONN_evm.TU.Sc2ySwM_117.1581 Anthoceros agrestis HOM05D002759 ORTHO05D003290 4.9e-34 150.6 613 24.8
MSTRG.16534 Avicennia marina HOM05D002759 ORTHO05D003290 5.4e-33 147.1 310 33.5
C04p12980 Brassica napus HOM05D002759 ORTHO05D003290 7.9e-32 143.3 544 27.6
arahy.Tifrunner.gnm1.ann1.JK8JKR Arachis hypogaea HOM05D002759 ORTHO05D003290 1.5e-27 129.0 337 31.8
Pp3c8_2900 Physcomitrium patens HOM05D002759 ORTHO05D003290 1.9e-25 122.1 594 25.1
SMO356G0583 Selaginella moellendorffii HOM05D002759 ORTHO05D003290 1.9e-25 122.1 412 25.5
arahy.Tifrunner.gnm1.ann1.HX0PY9 Arachis hypogaea HOM05D002759 ORTHO05D003290 7.4e-22 110.2 363 24.8
Mapoly0118s0005 Marchantia polymorpha HOM05D002759 ORTHO05D003290 6.2e-21 107.1 559 22.4
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.8e-20 105.5 198 36.9
TAR628G0627 Trochodendron aralioides HOM05D002759 ORTHO05D021026 4.0e-20 104.4 92 52.2
TAR628G1230 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.2e-19 102.8 92 51.1
Os02g0770700 Oryza sativa ssp. japonica HOM05D002759 ORTHO05D003290 1.5e-19 102.4 304 29.6
RcHm_v2.0_Chr4g0428231 Rosa chinensis HOM05D002759 ORTHO05D020730 2.2e-18 98.6 137 40.1
CARHR284400 Cardamine hirsuta HOM05D002759 ORTHO05D003290 4.6e-16 90.9 77 54.5
Actinidia00221 Actinidia chinensis HOM05D002759 ORTHO05D003290 1.1e-14 86.3 282 29.1
MD00G1111200 Malus domestica HOM05D002759 ORTHO05D003290 1.5e-14 85.9 78 47.4
MD08G1225400 Malus domestica HOM05D002759 ORTHO05D003290 1.5e-14 85.9 78 47.4
FAN01G1856 Fragaria x ananassa HOM05D002759 ORTHO05D020730 1.9e-14 85.5 86 47.7
FAN10G2628 Fragaria x ananassa HOM05D017399 ORTHO05D020730 1.6e-13 82.4 139 37.4
FAN10G4259 Fragaria x ananassa HOM05D017399 ORTHO05D020730 3.7e-13 81.3 139 36.7
AL7G28920 Arabidopsis lyrata HOM05D002759 ORTHO05D003290 6.3e-13 80.5 101 41.6
AT5G28550 Arabidopsis thaliana HOM05D002759 ORTHO05D003290 1.8e-12 79.0 83 44.6
CBR_g18638 Chara braunii HOM05D002759 ORTHO05D003290 1.0e-10 73.2 524 23.3
CARHR284390 Cardamine hirsuta HOM05D002759 ORTHO05D003290 1.3e-10 72.8 44 72.7
TAR636G1783 Trochodendron aralioides HOM05D002759 ORTHO05D021026 1.7e-10 72.4 50 62.0
Lsat_1_v5_gn_4_7760 Lactuca sativa HOM05D002759 ORTHO05D003290 5.0e-10 70.9 62 48.4
SHI26605 Sapria himalayana HOM05D002759 ORTHO05D003290 5.5e-09 67.4 125 36.8
SHI26606 Sapria himalayana HOM05D002759 ORTHO05D003290 9.4e-09 66.6 90 35.6
Hund17373 Selenicereus undatus HOM05D002759 ORTHO05D003290 1.6e-08 65.9 333 27.6
SEGI_36049 Sequoiadendron giganteum HOM05D002759 ORTHO05D003290 1.6e-08 65.9 107 32.7
FvH4_7g11070 Fragaria vesca HOM05D017399 ORTHO05D020730 2.3e-07 62.0 136 33.8
MD08G1226200 Malus domestica HOM05D002759 ORTHO05D003290 3.9e-07 61.2 40 70.0
C04p02400 Brassica napus HOM05D002759 ORTHO05D000588 5.1e-07 60.8 79 39.2
TAR633G0239 Trochodendron aralioides HOM05D002759 ORTHO05D021026 5.1e-07 60.8 93 39.8
ECA236G5108 Erigeron canadensis HOM05D002759 ORTHO05D003290 1.1e-06 59.7 172 23.8
vmacro01779 Vaccinium macrocarpon HOM05D002759 ORTHO05D003290 7.4e-06 57.0 149 32.9


User provided reference genes

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