Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.4e-110 401.7 211 100.0
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.1e-75 286.2 204 75.0
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 6.0e-75 284.6 208 70.7
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 5.1e-74 281.6 208 72.1
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 6.6e-74 281.2 201 73.1
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 6.6e-74 281.2 202 72.3
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 2.5e-73 279.3 207 72.9
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.3e-73 278.5 207 72.9
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 5.6e-73 278.1 209 71.3
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 7.3e-73 277.7 207 72.5
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.0e-71 271.9 201 71.6
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.9e-71 271.2 208 70.7
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.9e-71 271.2 208 70.7
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 1.2e-70 270.4 212 67.0
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 1.5e-70 270.0 200 71.5
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 6.4e-69 264.6 202 68.3
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.1e-68 263.8 206 66.0
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 7.1e-68 261.2 200 66.0
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 9.3e-68 260.8 199 68.3
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 1.2e-67 260.4 206 65.0
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.2e-67 260.4 203 64.5
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 3.5e-67 258.8 201 68.2
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 4.6e-67 258.5 199 68.3
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.7e-66 256.5 208 64.4
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 3.0e-66 255.8 206 64.1
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 6.6e-66 254.6 187 74.3
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 6.6e-66 254.6 201 66.7
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 6.6e-66 254.6 197 71.1
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 8.7e-66 254.2 196 67.9
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 4.3e-65 251.9 199 64.3
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 9.6e-65 250.8 213 63.8
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 1.3e-64 250.4 206 65.5
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.3e-64 250.4 200 67.0
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.6e-64 250.0 200 64.0
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.8e-63 246.5 202 64.4
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 5.3e-63 245.0 205 62.9
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 5.3e-63 245.0 202 64.9
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 5.3e-63 245.0 206 61.7
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 5.3e-63 245.0 191 65.4
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 9.0e-63 244.2 202 63.9
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 1.2e-62 243.8 202 65.8
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 2.6e-62 242.7 201 65.2
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 9.9e-62 240.7 196 64.8
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 1.3e-61 240.4 196 64.8
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 1.7e-61 240.0 202 61.9
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 2.9e-61 239.2 178 68.5
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 4.9e-61 238.4 201 63.2
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 8.4e-61 237.7 200 62.0
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 8.4e-61 237.7 197 62.4
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.1e-60 237.3 209 59.8
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.9e-60 236.5 202 60.4
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 2.4e-60 236.1 203 62.1
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 3.2e-60 235.7 200 61.5
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 4.2e-60 235.3 200 62.0
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 7.1e-60 234.6 202 60.9
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 9.3e-60 234.2 206 62.6
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 9.3e-60 234.2 208 61.5
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.2e-59 233.8 202 62.4
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.6e-59 233.4 202 62.4
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 2.1e-59 233.0 198 62.6
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 4.6e-59 231.9 197 59.9
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 6.0e-59 231.5 203 61.6
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 6.0e-59 231.5 201 60.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 1.0e-58 230.7 204 61.3
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.8e-58 229.9 200 61.0
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 2.3e-58 229.6 208 63.5
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.5e-57 226.9 192 63.0
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.5e-57 226.9 219 58.9
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.9e-57 226.5 192 62.5
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.9e-57 226.5 201 60.2
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 3.3e-57 225.7 197 58.9
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 4.3e-57 225.3 206 58.7
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 5.6e-57 224.9 201 59.2
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.6e-56 223.4 199 57.8
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.6e-56 223.4 199 57.8
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 3.7e-56 222.2 201 58.2
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.1e-55 220.7 209 61.2
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.1e-55 220.7 209 59.3
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 1.4e-55 220.3 200 58.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 1.8e-55 219.9 198 57.6
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 3.1e-55 219.2 200 57.5
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 1.2e-54 217.2 165 67.3
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 1.0e-53 214.2 199 57.3
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 2.2e-53 213.0 207 57.5
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.9e-53 212.6 200 58.0
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 2.9e-53 212.6 202 57.9
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 4.9e-53 211.8 202 57.9
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 1.9e-52 209.9 198 56.1
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 3.2e-52 209.1 200 56.5
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 3.2e-52 209.1 224 52.2
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 3.2e-52 209.1 200 55.0
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 4.2e-52 208.8 224 51.8
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 4.2e-52 208.8 200 57.5
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 5.5e-52 208.4 202 56.9
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.6e-51 206.8 202 55.0
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 2.1e-51 206.5 184 59.2
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 3.5e-51 205.7 197 53.8
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 4.6e-51 205.3 202 55.4
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 3.0e-50 202.6 209 54.5
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 5.1e-50 201.8 200 53.5
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 8.7e-50 201.1 209 54.1
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 8.7e-50 201.1 200 49.5
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 1.9e-49 199.9 206 53.9
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 1.9e-49 199.9 206 53.9
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 9.0e-47 191.0 198 55.1
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-46 190.3 200 52.0
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 5.8e-46 188.3 205 51.7
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 1.3e-45 187.2 200 50.0
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 1.9e-44 183.3 147 62.6
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.9e-44 183.3 132 68.9
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.2e-43 180.6 218 49.1
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 5.1e-42 175.3 201 47.8
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 7.4e-41 171.4 201 44.8
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 1.2e-38 164.1 190 53.7
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 8.5e-37 157.9 206 46.6
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 7.2e-36 154.8 124 67.7
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 3.0e-34 149.4 124 65.3
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.3e-32 144.1 205 42.9
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.3e-32 144.1 196 45.4
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 5.3e-31 138.7 205 41.5
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 5.3e-31 138.7 205 41.5
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 3.4e-30 136.0 199 42.7
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 5.9e-30 135.2 205 40.5
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.4e-28 130.6 196 42.3
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.7e-27 126.3 196 41.8
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 3.0e-26 122.9 196 41.8
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.5e-25 120.6 85 69.4
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 3.1e-23 112.8 207 38.2
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 5.3e-23 112.1 182 37.9
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 3.5e-22 109.4 187 35.8
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.0e-21 107.8 182 32.4
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 8.5e-21 104.8 189 37.6
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 1.2e-19 100.9 180 33.3
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 6.1e-19 98.6 175 40.6
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.7e-13 80.5 95 38.9
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 4.2e-12 75.9 84 45.2
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 5.5e-12 75.5 135 38.5
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.2e-11 74.3 239 28.0
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 2.1e-11 73.6 50 68.0
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.4e-10 70.9 67 53.7
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 7.5e-09 65.1 74 54.1
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 1.3e-08 64.3 50 64.0
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 2.2e-08 63.5 74 52.7
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 2.2e-08 63.5 74 52.7
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 4.8e-08 62.4 171 26.3
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.4e-07 60.1 62 58.1
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 9.1e-07 58.2 62 54.8
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 1.2e-06 57.8 188 28.7
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 1.2e-06 57.8 91 42.9


User provided reference genes

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