Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 0.0e+00 1106.3 571 100.0
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.8e-219 766.1 551 75.0
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 5.4e-163 578.6 551 59.3
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 2.3e-161 573.2 550 59.6
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 6.6e-161 571.6 552 59.8
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 1.9e-160 570.1 551 58.4
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 1.6e-159 567.0 557 58.9
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.6e-159 565.8 551 58.8
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 8.1e-159 564.7 551 58.8
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 1.8e-158 563.5 551 58.6
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 5.3e-158 562.0 552 58.7
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.3e-156 557.4 554 58.7
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 9.6e-152 541.2 551 58.1
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.4e-150 536.6 555 55.3
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 5.3e-150 535.4 558 56.1
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 3.4e-149 532.7 562 56.9
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 1.7e-148 530.4 566 56.9
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.9e-148 529.6 552 56.9
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 9.3e-147 524.6 553 56.8
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 9.3e-147 524.6 571 55.7
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 2.7e-146 523.1 561 56.0
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 2.3e-145 520.0 555 55.5
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 3.3e-144 516.2 550 54.0
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 5.7e-144 515.4 558 56.5
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 2.1e-143 513.5 556 55.2
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 2.8e-143 513.1 303 87.5
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 2.4e-142 510.0 553 55.2
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 6.9e-142 508.4 549 55.9
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.5e-141 505.8 551 54.3
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 1.7e-140 503.8 556 55.2
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 5.5e-139 498.8 562 54.4
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 6.1e-138 495.4 552 53.3
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 7.9e-138 495.0 564 52.8
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.3e-137 493.4 558 52.3
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 6.7e-137 491.9 552 54.7
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 1.1e-136 491.1 554 54.0
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 1.1e-136 491.1 554 52.9
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 2.2e-135 486.9 556 55.2
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 4.8e-135 485.7 556 52.7
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.1e-134 484.6 554 52.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 6.9e-134 481.9 557 52.2
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 6.9e-134 481.9 604 50.2
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 3.4e-133 479.6 557 53.9
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.2e-132 476.9 566 53.7
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 5.0e-132 475.7 552 52.7
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.0e-132 475.7 566 51.9
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 1.1e-131 474.6 611 48.3
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 3.2e-131 473.0 561 51.3
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 5.5e-131 472.2 551 51.0
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 2.0e-128 463.8 556 52.9
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.7e-127 460.7 550 50.9
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.2e-127 460.3 553 53.5
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 1.1e-126 458.0 516 53.5
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 7.7e-125 451.8 551 50.5
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.0e-124 451.4 555 53.3
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 1.7e-124 450.7 555 50.5
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 2.9e-124 449.9 630 46.5
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 6.5e-124 448.7 552 50.5
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 6.5e-124 448.7 560 52.1
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 9.4e-123 444.9 563 50.8
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 4.7e-122 442.6 553 48.6
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 6.7e-121 438.7 561 51.2
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 6.7e-121 438.7 561 51.2
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.7e-119 434.1 565 51.0
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 8.2e-119 431.8 501 51.5
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 1.1e-118 431.4 555 48.3
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.0e-117 427.2 565 49.2
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 5.9e-117 425.6 550 48.5
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.0e-116 424.9 550 48.0
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.3e-116 424.5 554 46.9
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.2e-116 423.7 541 50.3
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 2.9e-116 423.3 551 48.3
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 1.9e-115 420.6 553 46.3
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.2e-114 417.9 564 46.1
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 5.2e-113 412.5 565 45.7
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 5.2e-113 412.5 573 48.5
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 6.7e-113 412.1 551 48.1
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 8.8e-113 411.8 564 49.5
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 1.5e-112 411.0 550 48.7
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 5.7e-112 409.1 553 47.9
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 2.2e-111 407.1 549 46.8
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 2.8e-111 406.8 554 47.3
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 9.1e-110 401.7 567 48.0
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.5e-109 399.4 555 47.2
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.6e-106 391.0 563 47.4
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 2.7e-106 390.2 562 48.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 4.7e-106 389.4 550 47.1
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 4.7e-106 389.4 553 47.0
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.1e-106 389.0 565 46.9
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 2.3e-105 387.1 550 46.7
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 8.8e-105 385.2 553 47.7
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 8.8e-105 385.2 551 46.6
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 8.8e-105 385.2 576 43.9
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 4.4e-104 382.9 566 46.1
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.8e-103 380.2 559 45.8
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 6.3e-103 379.0 556 46.0
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.4e-102 377.9 564 45.7
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 1.4e-102 377.9 577 45.6
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.8e-102 377.5 565 45.7
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.1e-102 376.3 481 49.7
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 7.0e-102 375.6 566 45.8
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.6e-101 374.4 549 45.2
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 3.5e-101 373.2 562 45.9
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 3.5e-101 373.2 562 45.9
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.0e-100 371.7 565 46.0
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 1.3e-100 371.3 439 52.4
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.9e-100 370.2 567 44.8
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.8e-100 369.8 564 45.4
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 3.2e-99 366.7 516 45.7
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 8.0e-98 362.1 556 42.8
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 5.0e-92 342.8 712 37.6
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.4e-80 303.5 585 38.6
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 5.4e-78 296.2 309 55.7
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 5.0e-76 289.7 359 49.0
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 5.2e-73 279.6 543 38.9
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 4.4e-72 276.6 322 52.8
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 1.3e-71 275.0 551 39.0
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 1.3e-71 275.0 551 39.0
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 7.8e-69 265.8 547 37.5
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 7.3e-59 232.6 597 34.5
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 9.6e-59 232.3 407 43.0
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 4.7e-58 229.9 587 34.1
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.9e-54 218.0 406 40.6
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 5.4e-54 216.5 250 54.8
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 1.4e-49 201.8 417 38.4
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.0e-49 200.3 534 34.1
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 8.7e-44 182.6 303 40.6
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.3e-43 180.6 298 43.6
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 8.1e-42 176.0 189 50.8
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 5.3e-41 173.3 718 28.8
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 5.8e-40 169.9 179 55.3
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.9e-36 157.1 251 44.2
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.6e-32 142.9 216 46.3
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 9.3e-30 136.0 248 40.7
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 6.0e-29 133.3 563 30.9
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.0e-28 132.5 485 27.2
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 5.1e-20 103.6 98 54.1
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 9.1e-17 92.8 262 34.4
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.0e-16 91.7 126 44.4
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 5.9e-16 90.1 147 43.5
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.3e-15 89.0 99 47.5
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 5.0e-15 87.0 183 37.7
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 3.2e-14 84.3 130 47.7
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.2e-13 82.4 160 38.8
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 2.7e-13 81.3 124 46.8
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.3e-07 62.4 467 22.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 2.9e-07 61.2 546 25.6
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.2e-06 57.4 231 30.7
RcHm_v2.0_Chr1g0360321 Rosa chinensis HOM05D004539 ORTHO05D005482 7.2e-06 56.6 38 73.7


User provided reference genes

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