Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc146.45 Carica papaya HOM05D005985 ORTHO05D007403 9.0e-130 466.8 223 100.0
Atru.chr4.3125 Acer truncatum HOM05D005985 ORTHO05D007403 4.1e-98 361.7 219 72.6
Dinv29531 Davidia involucrata HOM05D005985 ORTHO05D007403 5.3e-98 361.3 218 73.4
Manes.15G003600 Manihot esculenta HOM05D005985 ORTHO05D007403 7.7e-97 357.5 219 73.5
Gorai.011G204600 Gossypium raimondii HOM05D005985 ORTHO05D007403 1.3e-96 356.7 219 73.1
MBI18_g28902_MAGBIO Magnolia biondii HOM05D005985 ORTHO05D007403 1.3e-96 356.7 219 71.7
PSO761G0261 Papaver somniferum HOM05D005985 ORTHO05D007403 1.3e-96 356.7 219 71.7
PSO210G5602 Papaver somniferum HOM05D005985 ORTHO05D007403 2.9e-96 355.5 219 71.2
GSVIVG01017666001 Vitis vinifera HOM05D005985 ORTHO05D007403 5.0e-96 354.8 219 73.1
Eucgr.G02036 Eucalyptus grandis HOM05D005985 ORTHO05D007403 1.5e-95 353.2 219 72.6
Gohir.A10G176000 Gossypium hirsutum HOM05D005985 ORTHO05D007403 4.2e-95 351.7 219 71.2
Gohir.D10G182600 Gossypium hirsutum HOM05D005985 ORTHO05D007403 4.2e-95 351.7 219 72.1
Manes.03G210400 Manihot esculenta HOM05D005985 ORTHO05D007403 4.2e-95 351.7 219 72.6
PSO144G0010 Papaver somniferum HOM05D005985 ORTHO05D007403 5.5e-95 351.3 219 71.2
Nn3g21870 Nelumbo nucifera HOM05D005985 ORTHO05D007403 7.2e-95 350.9 219 69.9
MD13G1144500 Malus domestica HOM05D005985 ORTHO05D007403 1.6e-94 349.7 219 70.3
Haze_00800 Corylus avellana HOM05D005985 ORTHO05D007403 2.7e-94 349.0 219 69.9
CDE02G0842 Ceratophyllum demersum HOM05D005985 ORTHO05D007403 1.8e-93 346.3 219 68.0
Duzib128G0500 Durio zibethinus HOM05D005985 ORTHO05D007403 2.3e-93 345.9 219 70.8
QL06p013713 Quercus lobata HOM05D005985 ORTHO05D007403 3.0e-93 345.5 219 68.9
Duzib212G0534 Durio zibethinus HOM05D005985 ORTHO05D007403 6.7e-93 344.4 219 70.3
Cfa015714 Carpinus fangiana HOM05D005985 ORTHO05D007403 8.8e-93 344.0 220 69.1
PGR031G1426 Punica granatum HOM05D005985 ORTHO05D007403 1.1e-92 343.6 219 71.7
Duzib128G2054 Durio zibethinus HOM05D005985 ORTHO05D007403 3.3e-92 342.0 219 70.3
ATR0796G055 Amborella trichopoda HOM05D005985 ORTHO05D007403 1.3e-91 340.1 219 67.6
Peaxi162Scf00103g01922 Petunia axillaris HOM05D005985 ORTHO05D007403 4.8e-91 338.2 219 69.9
Potri.008G099900 Populus trichocarpa HOM05D005985 ORTHO05D007403 4.8e-91 338.2 219 70.3
CANSAT78G1051 Cannabis sativa HOM05D005985 ORTHO05D007403 6.3e-91 337.8 219 68.0
HanXRQChr07g0194341 Helianthus annuus HOM05D005985 ORTHO05D007403 6.3e-91 337.8 219 69.4
Aqoxy2G02563 Aquilegia oxysepala HOM05D005985 ORTHO05D007403 1.1e-90 337.0 219 69.4
ECA233G5395 Erigeron canadensis HOM05D005985 ORTHO05D007403 1.1e-90 337.0 219 69.4
TWI09G1588 Tripterygium wilfordii HOM05D005985 ORTHO05D007403 1.8e-90 336.3 219 68.0
EL10Ac3g06274 Beta vulgaris HOM05D005985 ORTHO05D007403 3.1e-90 335.5 219 68.5
CsaV3_3G015450 Cucumis sativus L. HOM05D005985 ORTHO05D007403 7.0e-90 334.3 219 66.7
RcHm_v2.0_Chr4g0426681 Rosa chinensis HOM05D005985 ORTHO05D007403 7.0e-90 334.3 219 67.6
THA.LOC104821806 Tarenaya hassleriana HOM05D005985 ORTHO05D007403 7.0e-90 334.3 217 69.6
Lj6A699T60 Lonicera japonica HOM05D005985 ORTHO05D007403 9.1e-90 334.0 219 68.5
ClCG05G006800 Citrullus lanatus HOM05D005985 ORTHO05D007403 2.7e-89 332.4 217 67.7
Nitab4.5_0000781g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 2.7e-89 332.4 219 68.9
Sabra08G0075600 Salix brachista HOM05D005985 ORTHO05D007403 4.5e-89 331.6 219 69.4
AUR62029991 Chenopodium quinoa HOM05D005985 ORTHO05D007403 7.7e-89 330.9 219 67.1
Sc24g0001290 Simmondsia chinensis HOM05D005985 ORTHO05D007403 7.7e-89 330.9 219 66.7
Os07g0638300 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 1.0e-88 330.5 219 66.7
Lsat_1_v5_gn_6_69481 Lactuca sativa HOM05D005985 ORTHO05D007403 1.3e-88 330.1 219 67.6
SGA_v2.0_scaffold64G22045 Striga asiatica HOM05D005985 ORTHO05D007403 1.3e-88 330.1 219 67.6
Ca_18238_v3 Cicer arietinum L. HOM05D005985 ORTHO05D007403 1.7e-88 329.7 219 66.7
VMungo0251G0059 Vigna mungo HOM05D005985 ORTHO05D007403 2.2e-88 329.3 219 67.1
AUR62002570 Chenopodium quinoa HOM05D005985 ORTHO05D007403 2.9e-88 328.9 219 67.1
Solyc03g096040.3 Solanum lycopersicum HOM05D005985 ORTHO05D007403 3.8e-88 328.6 219 68.5
PGSC0003DMG400027720 Solanum tuberosum HOM05D005985 ORTHO05D007403 3.8e-88 328.6 219 68.9
TPR.G31247 Trifolium pratense HOM05D005985 ORTHO05D007403 3.8e-88 328.6 219 66.2
Glyma.08G088000 Glycine max HOM05D005985 ORTHO05D007403 5.0e-88 328.2 219 68.0
Medtr4g094720 Medicago truncatula HOM05D005985 ORTHO05D007403 6.5e-88 327.8 219 65.8
Nitab4.5_0000204g0010 Nicotiana tabacum HOM05D005985 ORTHO05D007403 6.5e-88 327.8 214 68.2
SalBow8G2871 Salvia bowleyana HOM05D005985 ORTHO05D007403 6.5e-88 327.8 219 66.2
TAR362G0466 Trochodendron aralioides HOM05D005985 ORTHO05D007403 6.5e-88 327.8 245 61.2
Psat7g085840 Pisum sativum HOM05D005985 ORTHO05D007403 8.5e-88 327.4 219 67.6
Aa31LG10G5610 Aethionema arabicum HOM05D005985 ORTHO05D007403 1.1e-87 327.0 220 66.8
Phvul.002G189300 Phaseolus vulgaris HOM05D005985 ORTHO05D007403 1.1e-87 327.0 219 67.6
Sopen03g026120 Solanum pennellii HOM05D005985 ORTHO05D007403 1.1e-87 327.0 219 68.0
Actinidia02521 Actinidia chinensis HOM05D005985 ORTHO05D007403 1.5e-87 326.6 221 67.4
Prupe.1G109000 Prunus persica HOM05D005985 ORTHO05D007403 1.5e-87 326.6 220 65.5
arahy.Tifrunner.gnm1.ann1.7BH383 Arachis hypogaea HOM05D005985 ORTHO05D007403 1.9e-87 326.2 219 64.8
arahy.Tifrunner.gnm1.ann1.BM2Q5K Arachis hypogaea HOM05D005985 ORTHO05D007403 1.9e-87 326.2 219 64.8
FAN17G1815 Fragaria x ananassa HOM05D005985 ORTHO05D007403 9.4e-87 323.9 219 65.3
Ciclev10007138m.g Citrus clementina HOM05D005985 ORTHO05D007403 1.2e-86 323.6 211 69.7
Lj4g0025954 Lotus japonicus HOM05D005985 ORTHO05D007403 1.2e-86 323.6 219 65.8
MELO3C006744.2 Cucumis melo HOM05D005985 ORTHO05D007403 1.6e-86 323.2 233 62.2
HPP92_020535 Vanilla planifolia HOM05D005985 ORTHO05D007403 3.6e-86 322.0 219 63.9
Sp1g35100 Schrenkiella parvula HOM05D005985 ORTHO05D007403 1.4e-85 320.1 221 66.1
CSS0012631 Camellia sinensis var. sinensis HOM05D005985 ORTHO05D007403 2.3e-85 319.3 228 64.0
DCAR_023383 Daucus carota HOM05D005985 ORTHO05D007403 5.2e-85 318.2 221 65.2
Carub.0001s3723 Capsella rubella HOM05D005985 ORTHO05D007403 8.8e-85 317.4 221 66.1
Oeu020283.1 Olea europaea HOM05D005985 ORTHO05D007403 1.5e-84 316.6 219 67.1
Lalb_Chr07g0188301 Lupinus albus HOM05D005985 ORTHO05D007403 2.0e-84 316.2 219 65.3
Nn4g25416 Nelumbo nucifera HOM05D005985 ORTHO05D007403 2.0e-84 316.2 299 51.8
AL1G54700 Arabidopsis lyrata HOM05D005985 ORTHO05D007403 7.5e-84 314.3 221 65.2
AT1G48130 Arabidopsis thaliana HOM05D005985 ORTHO05D007403 9.8e-84 313.9 221 65.2
Thhalv10012121m.g Eutrema salsugineum HOM05D005985 ORTHO05D007403 9.8e-84 313.9 221 66.1
FvH4_4g21120 Fragaria vesca HOM05D005985 ORTHO05D007403 9.8e-84 313.9 211 66.4
A05p21210 Brassica napus HOM05D005985 ORTHO05D007403 1.3e-83 313.5 221 64.7
BcaC05g27595 Brassica carinata HOM05D005985 ORTHO05D007403 1.7e-83 313.2 221 64.3
CARHR037770 Cardamine hirsuta HOM05D005985 ORTHO05D007403 1.7e-83 313.2 221 65.2
BolC6t37315H Brassica oleracea HOM05D005985 ORTHO05D007403 4.8e-83 311.6 221 63.8
unitig_88.g27789 Utricularia gibba HOM05D000412 ORTHO05D007403 4.8e-83 311.6 219 64.8
SMO367G0796 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 6.3e-83 311.2 219 62.6
C05p35800 Brassica napus HOM05D005985 ORTHO05D007403 8.3e-83 310.8 221 63.8
Duzib212G0439 Durio zibethinus HOM05D005985 ORTHO05D007403 1.4e-82 310.1 219 66.2
BolC5t32296H Brassica oleracea HOM05D005985 ORTHO05D007403 2.4e-82 309.3 221 63.8
Rhsim02G0000600 Rhododendron simsii HOM05D005985 ORTHO05D007403 3.1e-82 308.9 219 63.9
BcaB02g10720 Brassica carinata HOM05D005985 ORTHO05D007403 1.6e-81 306.6 221 63.3
Os07g0638400 Oryza sativa ssp. japonica HOM05D005985 ORTHO05D007403 2.7e-81 305.8 219 61.2
BraA05t21027Z Brassica rapa HOM05D005985 ORTHO05D007403 4.5e-81 305.1 236 61.0
SEGI_14508 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 4.5e-81 305.1 215 63.3
Migut.O00392 Erythranthe guttata HOM05D005985 ORTHO05D007403 1.0e-80 303.9 223 63.7
BraA05t20750Z Brassica rapa HOM05D005985 ORTHO05D007403 1.3e-80 303.5 236 60.2
Zm00001eb328770 Zea mays HOM05D005985 ORTHO05D007403 1.9e-79 299.7 229 59.4
Mapoly0057s0102 Marchantia polymorpha HOM05D005985 ORTHO05D007403 1.8e-77 293.1 217 58.1
Pp3c22_8470 Physcomitrium patens HOM05D005985 ORTHO05D007403 1.8e-77 293.1 215 60.5
Migut.G00012 Erythranthe guttata HOM05D005985 ORTHO05D007403 4.0e-77 292.0 222 63.1
AagrBONN_evm.TU.Sc2ySwM_228.1443 Anthoceros agrestis HOM05D005985 ORTHO05D007403 7.0e-74 281.2 219 55.7
CBR_g8949 Chara braunii HOM05D005985 ORTHO05D007403 4.5e-73 278.5 216 61.1
CAN.G546.41 Capsicum annuum HOM05D005985 ORTHO05D007403 2.1e-70 269.6 219 57.5
Pp3c10_21340 Physcomitrium patens HOM05D005985 ORTHO05D007403 1.7e-67 260.0 217 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1081 Anthoceros agrestis HOM05D005985 ORTHO05D007403 4.9e-67 258.5 218 50.9
Mapoly0042s0090 Marchantia polymorpha HOM05D005985 ORTHO05D007403 4.9e-67 258.5 217 49.8
COL.COLO4_34540 Corchorus olitorius HOM05D005985 ORTHO05D007403 1.4e-66 256.9 167 69.5
Pp3c20_21100 Physcomitrium patens HOM05D005985 ORTHO05D007403 7.0e-66 254.6 217 48.4
SEGI_03003 Sequoiadendron giganteum HOM05D005985 ORTHO05D007403 2.0e-65 253.1 217 49.8
SMO147G0228 Selaginella moellendorffii HOM05D005985 ORTHO05D007403 1.4e-61 240.4 218 46.3
PRCOL_00004927 Prasinoderma coloniale HOM05D005985 ORTHO05D007403 4.9e-59 231.9 221 45.7
AagrBONN_evm.TU.Sc2ySwM_228.1273 Anthoceros agrestis HOM05D005985 ORTHO05D007403 3.6e-54 215.7 221 43.0
Cfa026758 Carpinus fangiana HOM05D005985 ORTHO05D007403 2.7e-49 199.5 223 43.0
Haze_27189 Corylus avellana HOM05D005985 ORTHO05D007403 1.1e-45 187.6 214 42.5
Thecc.04G309900 Theobroma cacao HOM05D005985 ORTHO05D007403 1.4e-45 187.2 128 66.4
AagrBONN_evm.TU.Sc2ySwM_344.4472 Anthoceros agrestis HOM05D005985 ORTHO05D007403 8.9e-45 184.5 207 39.1
Glyma.05G133500 Glycine max HOM05D005985 ORTHO05D007403 7.1e-42 174.9 107 69.2
GSVIVG01034909001 Vitis vinifera HOM05D005985 ORTHO05D007403 9.9e-36 154.5 129 56.6
Nn1g05419 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.9e-34 150.2 89 70.8
Glyma.05G133466 Glycine max HOM05D005985 ORTHO05D007403 5.4e-34 148.7 108 64.8
C06p21300 Brassica napus HOM05D005985 ORTHO05D007403 9.3e-34 147.9 87 70.1
MD16G1139600 Malus domestica HOM05D005985 ORTHO05D007403 1.1e-29 134.4 181 42.0
Nn1g05808 Nelumbo nucifera HOM05D005985 ORTHO05D007403 1.8e-29 133.7 95 62.1
Gorai.001G249700 Gossypium raimondii HOM05D005985 ORTHO05D007403 7.6e-28 128.3 75 74.7
GSVIVG01017665001 Vitis vinifera HOM05D005985 ORTHO05D007403 1.7e-27 127.1 98 58.2
Gohir.D01G126866 Gossypium hirsutum HOM05D005985 ORTHO05D007403 4.9e-27 125.6 73 75.3
Gorai.002G157500 Gossypium raimondii HOM05D005985 ORTHO05D007403 1.0e-24 117.9 73 71.2
Cc03_g00310 Coffea canephora HOM05D005985 ORTHO05D007403 7.1e-18 95.1 62 69.4
Sopen01g003280 Solanum pennellii HOM05D003127 ORTHO05D003709 2.1e-17 93.6 194 29.9
MSTRG.5906 Avicennia marina HOM05D003127 ORTHO05D003709 4.6e-17 92.4 193 28.5
Cc06_g06390 Coffea canephora HOM05D003127 ORTHO05D003709 3.9e-16 89.4 193 28.5
TWI53G2011 Tripterygium wilfordii HOM05D003127 ORTHO05D003709 5.1e-16 89.0 193 28.0
Potri.006G204900 Populus trichocarpa HOM05D003127 ORTHO05D003709 6.7e-16 88.6 186 29.0
SMO137G0124 Selaginella moellendorffii HOM05D003127 ORTHO05D003709 4.3e-15 85.9 186 28.0
Cre17.g743897 Chlamydomonas reinhardtii HOM05D003127 ORTHO05D003709 2.4e-13 80.1 184 26.1
AagrBONN_evm.TU.Sc2ySwM_117.3919 Anthoceros agrestis HOM05D003127 ORTHO05D003709 9.0e-13 78.2 184 26.6
Haze_27581 Corylus avellana HOM05D003127 ORTHO05D003709 6.5e-11 72.0 166 24.7
Lalb_Chr13g0293491 Lupinus albus HOM05D005985 ORTHO05D007403 3.0e-08 63.2 39 64.1
Glyma.19G198200 Glycine max HOM05D003127 ORTHO05D003709 3.9e-08 62.8 118 28.8
BcaC01g01496 Brassica carinata HOM05D005985 ORTHO05D007403 2.5e-07 60.1 71 45.1


User provided reference genes

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