Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1437.1 Carica papaya HOM05D004065 ORTHO05D004806 1.1e-311 1072.4 558 100.0
Thecc.10G046900 Theobroma cacao HOM05D004065 ORTHO05D004806 2.2e-225 785.8 600 71.8
Atru.chr12.508 Acer truncatum HOM05D004065 ORTHO05D004806 4.7e-220 768.1 630 68.1
Potri.010G207900 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.8e-219 766.1 602 68.6
Duzib114G0580 Durio zibethinus HOM05D004065 ORTHO05D004806 1.2e-218 763.5 600 69.7
Potri.008G052700 Populus trichocarpa HOM05D004065 ORTHO05D004806 1.7e-217 759.6 603 68.7
Gohir.A10G215800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 2.2e-217 759.2 600 69.0
THA.LOC104799352 Tarenaya hassleriana HOM05D004065 ORTHO05D004806 1.9e-216 756.1 591 70.7
Gohir.D10G224800 Gossypium hirsutum HOM05D004065 ORTHO05D004806 5.4e-216 754.6 600 68.5
Aa31LG3G60 Aethionema arabicum HOM05D004065 ORTHO05D004806 9.2e-216 753.8 610 68.9
Thhalv10019927m.g Eutrema salsugineum HOM05D004065 ORTHO05D004806 2.1e-215 752.7 586 70.5
Duzib106G1820 Durio zibethinus HOM05D004065 ORTHO05D004806 3.5e-215 751.9 600 68.5
AL3G24260 Arabidopsis lyrata HOM05D004065 ORTHO05D004806 4.6e-215 751.5 583 70.7
AT3G12590 Arabidopsis thaliana HOM05D004065 ORTHO05D004806 4.6e-215 751.5 585 70.4
CARHR087100 Cardamine hirsuta HOM05D004065 ORTHO05D004806 6.0e-215 751.1 585 70.3
Gorai.011G255800 Gossypium raimondii HOM05D004065 ORTHO05D004806 7.8e-215 750.7 600 68.3
GSVIVG01016585001 Vitis vinifera HOM05D004065 ORTHO05D004806 5.1e-214 748.0 586 69.5
Sp3g10730 Schrenkiella parvula HOM05D004065 ORTHO05D004806 6.6e-214 747.7 585 69.9
Manes.10G033000 Manihot esculenta HOM05D004065 ORTHO05D004806 1.9e-213 746.1 600 68.8
Carub.0003s1194 Capsella rubella HOM05D004065 ORTHO05D004806 5.6e-213 744.6 591 69.7
TWI38G1478 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 9.5e-213 743.8 600 67.8
TWI15G0503 Tripterygium wilfordii HOM05D004065 ORTHO05D004806 1.4e-211 740.0 601 68.4
Ciclev10030542m.g Citrus clementina HOM05D004065 ORTHO05D004806 1.2e-210 736.9 601 67.2
RcHm_v2.0_Chr1g0366301 Rosa chinensis HOM05D004065 ORTHO05D004806 7.6e-210 734.2 597 67.7
MD07G1194200 Malus domestica HOM05D004065 ORTHO05D004806 4.9e-209 731.5 594 67.2
Prupe.2G231600 Prunus persica HOM05D004065 ORTHO05D004806 6.4e-209 731.1 594 67.0
Cfa001505 Carpinus fangiana HOM05D004065 ORTHO05D004806 3.2e-208 728.8 583 69.3
Hma1.2p1_0727F.1_g209200 Hydrangea macrophylla HOM05D004065 ORTHO05D004806 3.2e-208 728.8 600 67.5
Gorai.012G069700 Gossypium raimondii HOM05D004065 ORTHO05D004806 5.4e-208 728.0 601 67.1
BcaB04g21060 Brassica carinata HOM05D004065 ORTHO05D004806 1.6e-207 726.5 584 68.3
Dinv25990 Davidia involucrata HOM05D004065 ORTHO05D004806 4.6e-207 724.9 601 67.1
Gohir.D04G062400 Gossypium hirsutum HOM05D004065 ORTHO05D004806 1.3e-206 723.4 601 66.7
Dinv31435 Davidia involucrata HOM05D004065 ORTHO05D004806 3.0e-206 722.2 600 67.2
BraA03t12924Z Brassica rapa HOM05D004065 ORTHO05D004806 8.7e-206 720.7 595 67.6
BcaC01g04018 Brassica carinata HOM05D004065 ORTHO05D004806 1.9e-205 719.5 591 67.9
CANSAT56G4002 Cannabis sativa HOM05D004065 ORTHO05D004806 1.6e-204 716.5 599 65.9
Eucgr.G02920 Eucalyptus grandis HOM05D004065 ORTHO05D004806 8.1e-204 714.1 594 66.2
MD01G1124000 Malus domestica HOM05D004065 ORTHO05D004806 1.1e-203 713.8 611 66.0
TAR633G2080 Trochodendron aralioides HOM05D004065 ORTHO05D004806 1.1e-203 713.8 600 65.7
Phvul.008G013500 Phaseolus vulgaris HOM05D004065 ORTHO05D004806 5.3e-203 711.4 602 66.3
QL08p059042 Quercus lobata HOM05D004065 ORTHO05D004806 5.3e-203 711.4 582 69.4
FAN10G0299 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.9e-203 711.1 593 65.1
Glyma.02G093600 Glycine max HOM05D004065 ORTHO05D004806 9.0e-203 710.7 601 66.1
BNapus_Darmor_BZH_scaffold_149p00120 Brassica napus HOM05D004065 ORTHO05D004806 2.6e-202 709.1 626 64.1
BolC1t05197H Brassica oleracea HOM05D004065 ORTHO05D004806 2.6e-202 709.1 612 65.0
BraA01t04124Z Brassica rapa HOM05D004065 ORTHO05D004806 2.6e-202 709.1 626 64.1
C01p52580 Brassica napus HOM05D004065 ORTHO05D004806 3.4e-202 708.8 626 63.9
FAN03G1397 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.4e-202 708.4 593 64.8
CSS0036524 Camellia sinensis var. sinensis HOM05D004065 ORTHO05D004806 9.9e-202 707.2 600 65.2
C03p45740 Brassica napus HOM05D000062 ORTHO05D004806 1.3e-201 706.8 581 67.6
PGR142G1305 Punica granatum HOM05D004065 ORTHO05D004806 1.3e-201 706.8 596 64.4
Nn2g10418 Nelumbo nucifera HOM05D004065 ORTHO05D004806 1.9e-200 703.0 601 64.2
FAN06G3757 Fragaria x ananassa HOM05D004065 ORTHO05D004806 5.4e-200 701.4 593 64.2
FvH4_7g21970 Fragaria vesca HOM05D004065 ORTHO05D004806 7.1e-200 701.0 593 64.2
Lj1g0007112 Lotus japonicus HOM05D004065 ORTHO05D004806 2.7e-199 699.1 601 65.7
A03p37690 Brassica napus HOM05D000062 ORTHO05D004806 3.5e-199 698.7 578 67.3
Sabra10G0160500 Salix brachista HOM05D004065 ORTHO05D004806 3.5e-199 698.7 583 66.4
FAN06G3343 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.0e-199 698.0 593 64.1
Sed0019555 Sechium edule HOM05D004065 ORTHO05D004806 3.9e-198 695.3 584 65.8
FAN01G1867 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.9e-197 693.0 593 63.7
TPR.G15495 Trifolium pratense HOM05D004065 ORTHO05D004806 2.5e-197 692.6 602 64.0
Ca_07234_v3 Cicer arietinum L. HOM05D004065 ORTHO05D004806 3.3e-197 692.2 602 64.1
CsaV3_5G008100 Cucumis sativus L. HOM05D004065 ORTHO05D004806 7.3e-197 691.0 600 63.3
Lalb_Chr04g0257821 Lupinus albus HOM05D004065 ORTHO05D004806 3.6e-196 688.7 603 64.7
Psat3g180760 Pisum sativum HOM05D004065 ORTHO05D004806 1.8e-195 686.4 602 63.5
Sopen06g010560 Solanum pennellii HOM05D004065 ORTHO05D004806 9.0e-195 684.1 596 62.8
CiPaw.01G284400 Carya illinoinensis HOM05D004065 ORTHO05D004806 9.9e-194 680.6 582 65.8
BcaB04g21068 Brassica carinata HOM05D004065 ORTHO05D004806 1.7e-193 679.9 562 67.1
Solyc06g042950.3 Solanum lycopersicum HOM05D004065 ORTHO05D004806 3.8e-193 678.7 596 62.4
Medtr7g024190 Medicago truncatula HOM05D004065 ORTHO05D004806 8.4e-193 677.6 602 63.0
Cc02_g08160 Coffea canephora HOM05D004065 ORTHO05D004806 7.9e-191 671.0 597 62.6
Lsat_1_v5_gn_2_117761 Lactuca sativa HOM05D004065 ORTHO05D004806 1.0e-190 670.6 599 61.8
Haze_17038 Corylus avellana HOM05D004065 ORTHO05D004806 1.3e-190 670.2 569 66.8
ECA238G1619 Erigeron canadensis HOM05D004065 ORTHO05D004806 6.7e-190 667.9 595 62.0
FAN06G3693 Fragaria x ananassa HOM05D004065 ORTHO05D004806 6.7e-190 667.9 597 62.5
Glyma.10G289700 Glycine max HOM05D004065 ORTHO05D004806 1.3e-188 663.7 611 61.9
MELO3C023859.2 Cucumis melo HOM05D004065 ORTHO05D004806 2.8e-188 662.5 600 61.7
HanXRQChr07g0201231 Helianthus annuus HOM05D004065 ORTHO05D004806 2.8e-188 662.5 596 61.6
ClCG07G003370 Citrullus lanatus HOM05D004065 ORTHO05D004806 4.8e-188 661.8 619 60.4
arahy.Tifrunner.gnm1.ann1.P8VZLW Arachis hypogaea HOM05D004065 ORTHO05D004806 1.4e-187 660.2 602 63.0
arahy.Tifrunner.gnm1.ann1.XU51RJ Arachis hypogaea HOM05D004065 ORTHO05D004806 1.4e-187 660.2 602 63.0
Glyma.20G099500 Glycine max HOM05D004065 ORTHO05D004806 4.0e-187 658.7 611 61.7
SalBow6G0580 Salvia bowleyana HOM05D004065 ORTHO05D004806 1.5e-186 656.8 624 59.3
Aqoxy2G02042 Aquilegia oxysepala HOM05D004065 ORTHO05D004806 2.6e-186 656.0 606 59.9
LjContig00357g0027530 Lotus japonicus HOM05D004065 ORTHO05D004806 2.6e-186 656.0 611 61.2
Rhsim09G0164300 Rhododendron simsii HOM05D004065 ORTHO05D004806 3.4e-186 655.6 636 59.9
Psat6g236120 Pisum sativum HOM05D004065 ORTHO05D004806 7.6e-186 654.4 609 60.8
MSTRG.8235 Avicennia marina HOM05D004065 ORTHO05D004806 1.0e-185 654.1 596 61.4
DCAR_019167 Daucus carota HOM05D004065 ORTHO05D004806 1.4e-184 650.2 580 59.8
COL.COLO4_14967 Corchorus olitorius HOM05D004065 ORTHO05D004806 1.1e-181 640.6 521 67.4
SGA_v2.0_scaffold2G00996 Striga asiatica HOM05D004065 ORTHO05D004806 1.9e-181 639.8 598 60.0
Migut.F01518 Erythranthe guttata HOM05D004065 ORTHO05D004806 2.1e-180 636.3 573 63.0
Gohir.A05G350100 Gossypium hirsutum HOM05D004065 ORTHO05D004806 3.1e-179 632.5 601 59.7
PSO339G3310 Papaver somniferum HOM05D004065 ORTHO05D004806 4.5e-178 628.6 604 60.3
AUR62038371 Chenopodium quinoa HOM05D004065 ORTHO05D004806 2.5e-176 622.9 597 58.5
unitig_26.g10019 Utricularia gibba HOM05D004065 ORTHO05D004806 6.9e-171 604.7 563 59.5
DCAR_015196 Daucus carota HOM05D004065 ORTHO05D004806 2.2e-169 599.7 579 57.2
EL10Ac2g03418 Beta vulgaris HOM05D004065 ORTHO05D004806 2.5e-168 596.3 588 56.6
Peaxi162Scf00658g00731 Petunia axillaris HOM05D004065 ORTHO05D004806 3.2e-168 595.9 574 58.7
Oeu016023.5 Olea europaea HOM05D004065 ORTHO05D004806 2.5e-165 586.3 624 54.0
Nitab4.5_0001836g0030 Nicotiana tabacum HOM05D004065 ORTHO05D004806 2.0e-162 576.6 530 60.0
Lj8C86G13 Lonicera japonica HOM05D004065 ORTHO05D004806 1.3e-156 557.4 624 53.5
Lalb_Chr06g0164301 Lupinus albus HOM05D004065 ORTHO05D004806 1.3e-156 557.4 544 59.6
HPP92_003382 Vanilla planifolia HOM05D004065 ORTHO05D004806 4.8e-156 555.4 601 54.2
Nitab4.5_0005137g0020 Nicotiana tabacum HOM05D004065 ORTHO05D004806 6.3e-156 555.1 518 59.7
Zm00001eb139750 Zea mays HOM05D004065 ORTHO05D004806 7.0e-155 551.6 604 53.5
AUR62040961 Chenopodium quinoa HOM05D004065 ORTHO05D004806 4.1e-147 525.8 522 56.3
Hund20020 Selenicereus undatus HOM05D004065 ORTHO05D004806 1.2e-146 524.2 527 56.2
Actinidia29212 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.8e-137 492.7 518 56.9
CDE04G2206 Ceratophyllum demersum HOM05D004065 ORTHO05D004806 1.3e-132 477.6 535 50.7
SEGI_35631 Sequoiadendron giganteum HOM05D004065 ORTHO05D004806 3.7e-132 476.1 616 48.2
ATR0559G344 Amborella trichopoda HOM05D004065 ORTHO05D004806 7.0e-131 471.9 575 48.5
BcaB04g21053 Brassica carinata HOM05D004065 ORTHO05D004806 1.6e-130 470.7 561 51.5
Glyma.18G288500 Glycine max HOM05D004065 ORTHO05D004806 2.7e-122 443.4 568 48.8
AagrBONN_evm.TU.Sc2ySwM_344.343 Anthoceros agrestis HOM05D004065 ORTHO05D004806 2.3e-105 387.1 597 41.9
Mapoly0126s0012 Marchantia polymorpha HOM05D004065 ORTHO05D004806 1.2e-103 381.3 618 39.5
Pp3c24_6470 Physcomitrium patens HOM05D004065 ORTHO05D004806 6.8e-102 375.6 630 39.4
Sc20g0002620 Simmondsia chinensis HOM05D004065 ORTHO05D004806 2.6e-93 347.1 366 52.7
SHI22587 Sapria himalayana HOM05D004065 ORTHO05D004806 4.8e-87 326.2 423 50.1
CiPaw.02G182400 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.5e-85 321.2 239 74.9
CiPaw.02G182500 Carya illinoinensis HOM05D004065 ORTHO05D004806 1.4e-83 314.7 229 69.0
SMO146G0347 Selaginella moellendorffii HOM05D004065 ORTHO05D004806 2.7e-82 310.5 530 36.6
BolC8t48103H Brassica oleracea HOM05D004065 ORTHO05D004806 5.6e-80 302.8 209 73.2
CBR_g54636 Chara braunii HOM05D004065 ORTHO05D004806 1.8e-65 254.6 687 30.0
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.8e-57 228.0 231 62.3
Actinidia13867 Actinidia chinensis HOM05D004065 ORTHO05D004806 3.3e-56 223.8 158 72.2
FvH4_7g22002 Fragaria vesca HOM05D004065 ORTHO05D004806 2.4e-54 217.6 125 88.8
Os01g0974300 Oryza sativa ssp. japonica HOM05D004065 ORTHO05D004806 5.0e-44 183.3 158 59.5
Oeu012240.1 Olea europaea HOM05D004065 ORTHO05D004806 7.2e-43 179.5 167 63.5
SHI22586 Sapria himalayana HOM05D004065 ORTHO05D004806 1.1e-38 165.6 145 57.9
FAN18G1692 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.2e-31 141.4 214 44.4
FAN14G4766 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.4e-30 138.7 208 45.2
FAN03G2077 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.4e-30 137.9 208 44.7
FAN25G3689 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.7e-29 134.4 208 44.2
FAN03G1547 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.9e-28 131.0 108 63.0
BolC3t16849H Brassica oleracea HOM05D004065 ORTHO05D004806 5.0e-28 130.2 93 68.8
AagrBONN_evm.TU.Sc2ySwM_344.350 Anthoceros agrestis HOM05D004065 ORTHO05D004806 6.5e-20 103.2 80 68.8
FAN06G1862 Fragaria x ananassa HOM05D004065 ORTHO05D004806 7.2e-19 99.8 134 44.8
FvH4_7g26620 Fragaria vesca HOM05D004065 ORTHO05D004806 2.7e-18 97.8 130 45.4
FAN11G1748 Fragaria x ananassa HOM05D004065 ORTHO05D004806 2.7e-18 97.8 130 45.4
FAN08G2500 Fragaria x ananassa HOM05D000391 ORTHO05D000293 6.8e-17 93.2 150 40.0
arahy.Tifrunner.gnm1.ann1.JMTW06 Arachis hypogaea HOM05D004065 ORTHO05D004806 2.6e-16 91.3 57 82.5
MBI05_g10364_MAGBIO Magnolia biondii HOM05D004065 ORTHO05D004806 6.6e-12 76.6 64 56.2
Cre17.g707100 Chlamydomonas reinhardtii HOM05D004065 ORTHO05D004806 1.5e-11 75.5 123 35.0
FAN01G2840 Fragaria x ananassa HOM05D004065 ORTHO05D004806 1.2e-10 72.4 43 81.4
FAN25G3365 Fragaria x ananassa HOM05D004065 ORTHO05D004806 3.4e-08 64.3 111 38.7
AagrBONN_evm.TU.Sc2ySwM_344.349 Anthoceros agrestis HOM05D004065 ORTHO05D004806 3.7e-07 60.8 241 28.6
Zm00001eb362160 Zea mays HOM05D008199 ORTHO05D010334 6.4e-07 60.1 50 60.0


User provided reference genes

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