Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 1.9e-111 406.4 293 100.0
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 1.7e-64 250.4 284 78.9
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 1.3e-43 181.0 283 63.3
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.2e-35 153.7 280 59.3
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 8.4e-35 151.8 281 60.5
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 2.5e-34 150.2 281 55.5
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 1.3e-32 144.4 274 53.6
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 2.3e-32 143.7 142 58.5
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 3.9e-32 142.9 292 58.2
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 8.7e-32 141.7 133 61.7
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 8.7e-32 141.7 283 61.8
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 1.9e-31 140.6 132 59.8
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 7.4e-31 138.7 279 57.7
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 2.1e-30 137.1 257 54.1
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 3.7e-30 136.3 132 59.8
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 6.2e-30 135.6 287 51.9
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 1.8e-29 134.0 130 58.5
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 2.4e-29 133.7 128 59.4
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 3.1e-29 133.3 280 62.1
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 4.0e-29 132.9 141 53.2
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.5e-28 131.0 137 56.9
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 2.6e-28 130.2 273 57.1
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 1.7e-27 127.5 283 58.0
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.9e-27 126.7 136 55.1
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 2.9e-27 126.7 127 60.6
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 6.5e-27 125.6 134 53.7
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 8.4e-27 125.2 281 52.3
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 2.5e-26 123.6 279 50.9
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 5.5e-26 122.5 122 57.4
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 5.5e-26 122.5 128 53.9
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 7.1e-26 122.1 126 56.3
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 1.2e-25 121.3 282 60.3
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 1.2e-25 121.3 122 56.6
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 2.1e-25 120.6 128 56.2
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 2.7e-25 120.2 125 56.0
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 3.5e-25 119.8 276 61.6
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 4.6e-25 119.4 132 55.3
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 4.6e-25 119.4 132 58.3
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 6.1e-25 119.0 125 55.2
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 6.1e-25 119.0 125 55.2
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 7.9e-25 118.6 133 54.9
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 1.0e-24 118.2 274 59.9
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 1.0e-24 118.2 126 53.2
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 3.9e-24 116.3 141 46.8
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 3.9e-24 116.3 141 46.8
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 3.9e-24 116.3 284 52.8
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 3.9e-24 116.3 257 48.6
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 3.9e-24 116.3 280 59.6
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 5.1e-24 115.9 133 54.1
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 8.7e-24 115.2 290 48.3
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.1e-23 114.8 297 39.1
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 1.3e-22 111.3 274 46.4
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 3.7e-22 109.8 136 50.0
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 6.3e-22 109.0 121 51.2
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.1e-21 108.2 282 59.6
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 1.4e-21 107.8 287 50.2
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.4e-21 107.8 135 51.9
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 4.1e-21 106.3 128 50.8
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 4.1e-21 106.3 132 53.8
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 5.3e-21 105.9 126 48.4
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 5.3e-21 105.9 104 62.5
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.2e-20 104.8 129 51.9
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 2.0e-20 104.0 119 55.5
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 3.4e-20 103.2 129 51.2
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 3.4e-20 103.2 130 52.3
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 4.5e-20 102.8 128 52.3
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 5.9e-20 102.4 130 51.5
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 7.7e-20 102.1 126 46.8
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.0e-19 101.7 132 52.3
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.0e-19 101.7 126 53.2
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.3e-19 101.3 135 45.9
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 1.3e-19 101.3 262 57.3
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 1.3e-19 101.3 117 53.0
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.7e-19 100.9 111 54.1
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.7e-19 100.9 112 53.6
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 1.7e-19 100.9 135 48.9
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 1.7e-19 100.9 127 48.8
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 5.0e-19 99.4 132 44.7
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 5.0e-19 99.4 123 52.8
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 8.5e-19 98.6 126 45.2
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 2.5e-18 97.1 128 46.1
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 4.2e-18 96.3 124 50.0
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 4.2e-18 96.3 133 44.4
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 4.2e-18 96.3 127 47.2
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 7.2e-18 95.5 113 52.2
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 9.4e-18 95.1 121 52.1
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 3.9e-16 89.7 132 46.2
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 5.1e-16 89.4 281 44.5
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.5e-15 87.8 111 48.6
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.5e-15 87.8 111 48.6
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 5.7e-15 85.9 104 53.8
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 7.4e-15 85.5 123 47.2
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 9.7e-15 85.1 130 45.4
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 1.3e-14 84.7 111 52.3
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.1e-13 81.6 117 42.7
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 5.3e-13 79.3 256 57.8
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 5.3e-13 79.3 256 57.4
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 2.0e-12 77.4 328 47.6
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 3.4e-12 76.6 110 44.5
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 2.2e-11 73.9 112 45.5
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 2.2e-11 73.9 112 45.5
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.2e-11 73.9 105 40.0
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 5.0e-11 72.8 112 44.6
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 5.0e-11 72.8 112 44.6
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 6.5e-11 72.4 114 42.1
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 8.5e-11 72.0 103 46.6
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 7.2e-10 68.9 125 41.6
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 1.3e-06 58.2 50 66.0
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 6.3e-06 55.8 50 64.0


User provided reference genes

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