Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc140.8 Carica papaya HOM05D007079 ORTHO05D009006 4.2e-214 747.7 358 100.0
Cpa.g.sc2827.1 Carica papaya HOM05D007079 ORTHO05D009006 2.0e-83 313.5 254 67.3
Duzib093G0231 Durio zibethinus HOM05D007079 ORTHO05D009006 6.2e-64 248.8 277 49.8
Ciclev10003294m.g Citrus clementina HOM05D007079 ORTHO05D009006 2.9e-61 240.0 275 47.3
COL.COLO4_26243 Corchorus olitorius HOM05D007079 ORTHO05D009006 4.9e-61 239.2 279 47.0
Cfa013875 Carpinus fangiana HOM05D007079 ORTHO05D009006 6.4e-61 238.8 273 49.1
Gorai.009G271700 Gossypium raimondii HOM05D007079 ORTHO05D009006 1.1e-60 238.0 279 46.2
Thecc.08G033400 Theobroma cacao HOM05D007079 ORTHO05D009006 1.1e-60 238.0 277 47.3
QL02p009607 Quercus lobata HOM05D007079 ORTHO05D009006 1.4e-60 237.7 277 48.4
GSVIVG01009772001 Vitis vinifera HOM05D007079 ORTHO05D009006 7.1e-60 235.3 280 46.8
RcHm_v2.0_Chr6g0301681 Rosa chinensis HOM05D007079 ORTHO05D009006 1.6e-59 234.2 281 45.6
Atru.chr13.409 Acer truncatum HOM05D007079 ORTHO05D009006 2.1e-59 233.8 276 45.3
Potri.002G031500 Populus trichocarpa HOM05D007079 ORTHO05D009006 2.7e-59 233.4 276 47.1
CSS0042333 Camellia sinensis var. sinensis HOM05D007079 ORTHO05D009006 3.5e-59 233.0 279 45.2
TWI56G1128 Tripterygium wilfordii HOM05D007079 ORTHO05D009006 4.6e-59 232.6 277 47.7
Prupe.1G374300 Prunus persica HOM05D007079 ORTHO05D009006 7.8e-59 231.9 281 46.3
FvH4_2g39320 Fragaria vesca HOM05D007079 ORTHO05D009006 1.0e-58 231.5 281 44.5
Haze_22555 Corylus avellana HOM05D007079 ORTHO05D009006 1.7e-58 230.7 288 46.5
Sabra02G0025400 Salix brachista HOM05D007079 ORTHO05D009006 3.9e-58 229.6 279 46.2
CiPaw.07G156900 Carya illinoinensis HOM05D007079 ORTHO05D009006 8.7e-58 228.4 277 47.7
Manes.05G155100 Manihot esculenta HOM05D007079 ORTHO05D009006 8.7e-58 228.4 278 47.1
Hma1.2p1_0469F.1_g158910 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 3.3e-57 226.5 278 46.0
Rhsim06G0028600 Rhododendron simsii HOM05D007079 ORTHO05D009006 3.3e-57 226.5 276 45.3
vmacro21681 Vaccinium macrocarpon HOM05D007079 ORTHO05D009006 1.1e-55 221.5 286 43.4
CANSAT78G0946 Cannabis sativa HOM05D007079 ORTHO05D009006 3.1e-55 219.9 282 45.4
Lj4A133T11 Lonicera japonica HOM05D007079 ORTHO05D009006 5.2e-55 219.2 274 46.0
Ca_13380_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 6.9e-55 218.8 287 44.3
Ca_30048_v3 Cicer arietinum L. HOM05D007079 ORTHO05D009006 6.9e-55 218.8 287 44.3
Lj5g0022889 Lotus japonicus HOM05D007079 ORTHO05D009006 2.6e-54 216.9 277 44.4
Actinidia15361 Actinidia chinensis HOM05D007079 ORTHO05D009006 3.4e-54 216.5 279 43.7
HanXRQChr09g0264171 Helianthus annuus HOM05D007079 ORTHO05D009006 3.4e-54 216.5 276 45.7
Lalb_Chr22g0354571 Lupinus albus HOM05D007079 ORTHO05D009006 5.8e-54 215.7 282 45.4
Glyma.17G253400 Glycine max HOM05D007079 ORTHO05D009006 7.6e-54 215.3 277 43.3
MD08G1024600 Malus domestica HOM05D007079 ORTHO05D009006 7.6e-54 215.3 282 44.0
TPR.G30477 Trifolium pratense HOM05D007079 ORTHO05D009006 4.9e-53 212.6 281 44.1
Carub.0001s1923 Capsella rubella HOM05D007079 ORTHO05D009006 6.4e-53 212.2 279 43.0
CARHR020210 Cardamine hirsuta HOM05D007079 ORTHO05D009006 1.4e-52 211.1 277 43.7
Medtr1g022940 Medicago truncatula HOM05D007079 ORTHO05D009006 4.2e-52 209.5 285 43.5
Hund26893 Selenicereus undatus HOM05D007079 ORTHO05D009006 4.2e-52 209.5 278 44.6
MELO3C010968.2 Cucumis melo HOM05D007079 ORTHO05D009006 5.4e-52 209.1 281 43.8
VMungo0647G1101 Vigna mungo HOM05D007079 ORTHO05D009006 9.3e-52 208.4 292 41.8
PGSC0003DMG400010042 Solanum tuberosum HOM05D007079 ORTHO05D009006 1.2e-51 208.0 280 40.4
BcaB07g31982 Brassica carinata HOM05D007079 ORTHO05D009006 3.5e-51 206.5 279 42.7
A06p15810 Brassica napus HOM05D007079 ORTHO05D009006 3.5e-51 206.5 279 43.4
Aqoxy6G01196 Aquilegia oxysepala HOM05D007079 ORTHO05D009006 6.0e-51 205.7 282 42.6
Sed0004812 Sechium edule HOM05D007079 ORTHO05D009006 1.0e-50 204.9 282 43.3
CsaV3_2G029020 Cucumis sativus L. HOM05D007079 ORTHO05D009006 2.3e-50 203.8 280 42.9
MBI16_g23831_MAGBIO Magnolia biondii HOM05D007079 ORTHO05D009006 2.3e-50 203.8 281 41.6
Phvul.001G011600 Phaseolus vulgaris HOM05D007079 ORTHO05D009006 2.3e-50 203.8 285 41.4
Migut.K00854 Erythranthe guttata HOM05D007079 ORTHO05D009006 3.0e-50 203.4 277 39.7
C05p18130 Brassica napus HOM05D007079 ORTHO05D009006 3.9e-50 203.0 281 42.7
ECA238G0935 Erigeron canadensis HOM05D007079 ORTHO05D009006 3.9e-50 203.0 279 43.0
Solyc02g089890.4 Solanum lycopersicum HOM05D002466 ORTHO05D009006 3.9e-50 203.0 280 39.6
ClCG08G014740 Citrullus lanatus HOM05D007079 ORTHO05D009006 6.6e-50 202.2 282 43.3
Sopen02g034590 Solanum pennellii HOM05D007079 ORTHO05D009006 6.6e-50 202.2 288 38.5
CAN.G836.5 Capsicum annuum HOM05D007079 ORTHO05D009006 1.1e-49 201.4 287 39.0
PGR031G2472 Punica granatum HOM05D007079 ORTHO05D009006 1.1e-49 201.4 273 42.1
THA.LOC104813812 Tarenaya hassleriana HOM05D007079 ORTHO05D009006 1.5e-49 201.1 277 40.8
MSTRG.15412 Avicennia marina HOM05D007079 ORTHO05D009006 1.9e-49 200.7 282 41.5
BolC5t30520H Brassica oleracea HOM05D007079 ORTHO05D009006 3.3e-49 199.9 279 42.3
BraA06t24691Z Brassica rapa HOM05D007079 ORTHO05D009006 4.3e-49 199.5 280 42.9
Nn5g29708 Nelumbo nucifera HOM05D007079 ORTHO05D009006 4.3e-49 199.5 283 42.0
Ah.05g180850 Amaranthus hybridus HOM05D007079 ORTHO05D009006 9.6e-49 198.4 304 38.8
AL1G32410 Arabidopsis lyrata HOM05D007079 ORTHO05D009006 2.1e-48 197.2 278 41.0
Sc02g0005670 Simmondsia chinensis HOM05D007079 ORTHO05D009006 2.1e-48 197.2 282 42.2
FAN27G2216 Fragaria x ananassa HOM05D007079 ORTHO05D009006 2.8e-48 196.8 248 42.7
AT1G19690 Arabidopsis thaliana HOM05D007079 ORTHO05D009006 6.2e-48 195.7 275 41.5
Lsat_1_v5_gn_2_87400 Lactuca sativa HOM05D007079 ORTHO05D009006 8.1e-48 195.3 287 39.4
Sp1g17520 Schrenkiella parvula HOM05D007079 ORTHO05D009006 8.1e-48 195.3 279 40.9
arahy.Tifrunner.gnm1.ann1.1TI5B0 Arachis hypogaea HOM05D007079 ORTHO05D009006 1.8e-47 194.1 283 43.8
FAN15G1571 Fragaria x ananassa HOM05D007079 ORTHO05D009006 1.8e-47 194.1 275 40.0
Thhalv10008056m.g Eutrema salsugineum HOM05D007079 ORTHO05D009006 3.1e-47 193.4 281 40.6
FAN26G1347 Fragaria x ananassa HOM05D007079 ORTHO05D009006 4.0e-47 193.0 275 40.0
TAR376G0129 Trochodendron aralioides HOM05D007079 ORTHO05D009006 5.3e-47 192.6 255 43.9
Psat6g009680 Pisum sativum HOM05D007079 ORTHO05D009006 6.9e-47 192.2 317 39.4
Zm00001eb128420 Zea mays HOM05D007079 ORTHO05D009006 3.4e-46 189.9 272 41.9
Aa31LG7G4270 Aethionema arabicum HOM05D007079 ORTHO05D009006 4.5e-46 189.5 286 38.8
Gohir.D05G259900 Gossypium hirsutum HOM05D007079 ORTHO05D009006 4.5e-46 189.5 242 43.4
PSO541G3287 Papaver somniferum HOM05D007079 ORTHO05D009006 4.5e-46 189.5 284 40.1
Dinv39455 Davidia involucrata HOM05D007079 ORTHO05D009006 7.6e-46 188.7 249 43.8
Eucgr.F01861 Eucalyptus grandis HOM05D007079 ORTHO05D009006 7.6e-46 188.7 272 40.1
Cc07_g05190 Coffea canephora HOM05D007079 ORTHO05D009006 1.3e-45 188.0 279 38.0
AUR62014482 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.7e-45 187.6 286 40.6
Gohir.A05G258332 Gossypium hirsutum HOM05D007079 ORTHO05D009006 4.9e-45 186.0 242 42.6
SGA_v2.0_scaffold34G13653 Striga asiatica HOM05D007079 ORTHO05D009006 1.6e-43 181.0 275 39.3
PSO675G2324 Papaver somniferum HOM05D007079 ORTHO05D009006 2.1e-43 180.6 296 38.9
arahy.Tifrunner.gnm1.ann1.GTY6RX Arachis hypogaea HOM05D007079 ORTHO05D009006 7.9e-43 178.7 247 44.9
Glyma.14G071200 Glycine max HOM05D007079 ORTHO05D009006 1.3e-42 177.9 268 39.9
Oeu032890.1 Olea europaea HOM05D007079 ORTHO05D009006 6.7e-42 175.6 266 39.8
Hma1.2p1_0469F.1_g158920 Hydrangea macrophylla HOM05D007079 ORTHO05D009006 4.3e-41 172.9 197 48.7
Peaxi162Scf00535g00126 Petunia axillaris HOM05D007079 ORTHO05D009006 5.6e-41 172.6 284 36.6
Nitab4.5_0005754g0040 Nicotiana tabacum HOM05D007079 ORTHO05D009006 1.6e-40 171.0 257 37.4
Cpa.g.sc2827.2 Carica papaya HOM05D000003 ORTHO05D000004 2.4e-39 167.2 83 96.4
ATR1158G010 Amborella trichopoda HOM05D007079 ORTHO05D009006 3.1e-39 166.8 280 37.1
EL10Ac1g00614 Beta vulgaris HOM05D007079 ORTHO05D009006 1.5e-38 164.5 365 32.6
arahy.Tifrunner.gnm1.ann1.6FY89R Arachis hypogaea HOM05D000259 ORTHO05D000155 1.3e-37 161.4 227 44.1
CDE05G2112 Ceratophyllum demersum HOM05D007079 ORTHO05D009006 1.4e-36 157.9 263 36.1
Nitab4.5_0002108g0010 Nicotiana tabacum HOM05D002466 ORTHO05D002668 2.7e-35 153.7 261 36.4
SalBow1G2109 Salvia bowleyana HOM05D007079 ORTHO05D009006 8.7e-34 148.7 235 38.3
DCAR_026263 Daucus carota HOM05D007079 ORTHO05D009006 8.7e-26 122.1 144 44.4
AUR62034519 Chenopodium quinoa HOM05D007079 ORTHO05D009006 1.5e-25 121.3 173 41.6
AagrBONN_evm.TU.Sc2ySwM_344.2117 Anthoceros agrestis HOM05D007079 ORTHO05D009006 3.3e-25 120.2 276 33.3
Mapoly0043s0142 Marchantia polymorpha HOM05D007079 ORTHO05D009006 4.3e-25 119.8 292 31.5
Actinidia22515 Actinidia chinensis HOM05D007079 ORTHO05D009006 9.7e-25 118.6 101 55.4
SMO266G0019 Selaginella moellendorffii HOM05D007079 ORTHO05D009006 5.9e-22 109.4 284 28.5
Pp3c24_15610 Physcomitrium patens HOM05D007079 ORTHO05D009006 2.5e-20 104.0 290 27.9
CBR_g1049 Chara braunii HOM05D007079 ORTHO05D009006 3.0e-18 97.1 368 25.5
PRCOL_00000559 Prasinoderma coloniale HOM05D007079 ORTHO05D009006 5.9e-14 82.8 218 30.7
Cpa.g.sc32.138 Carica papaya HOM05D000003 ORTHO05D000004 2.2e-13 80.9 80 45.0
Cpa.g.sc140.5 Carica papaya HOM05D000003 ORTHO05D000004 1.4e-12 78.2 81 45.7
Cre14.g628500 Chlamydomonas reinhardtii HOM05D007079 ORTHO05D009006 5.5e-12 76.3 346 24.6
Cpa.g.sc73.80 Carica papaya HOM05D000003 ORTHO05D000004 1.2e-11 75.1 80 42.5
Cpa.g.sc195.3 Carica papaya HOM05D000003 ORTHO05D000004 2.1e-11 74.3 80 45.0
Cpa.g.sc35.64 Carica papaya HOM05D000003 ORTHO05D000004 2.7e-11 73.9 80 41.2
Cpa.g.sc352.1 Carica papaya HOM05D000003 ORTHO05D000004 6.1e-11 72.8 86 43.0
Cpa.g.sc104.15 Carica papaya HOM05D000003 ORTHO05D000004 3.9e-10 70.1 80 43.8
Cpa.g.sc83.78 Carica papaya HOM05D000003 ORTHO05D000004 3.9e-10 70.1 80 45.0
Cpa.g.sc363.2 Carica papaya HOM05D000003 ORTHO05D000004 6.7e-10 69.3 91 38.5
Cpa.g.sc53.61 Carica papaya HOM05D000003 ORTHO05D000004 8.8e-10 68.9 79 44.3
Cpa.g.sc425.1 Carica papaya HOM05D000003 ORTHO05D000004 5.7e-09 66.2 81 42.0
Cpa.g.sc272.4 Carica papaya HOM05D000003 ORTHO05D000004 9.7e-09 65.5 80 41.2
Cpa.g.sc33.44 Carica papaya HOM05D000003 ORTHO05D000004 9.7e-09 65.5 80 38.8
SEGI_24775 Sequoiadendron giganteum HOM05D007079 ORTHO05D009006 1.7e-08 64.7 96 36.5
Cpa.g.sc4559.2 Carica papaya HOM05D000003 ORTHO05D000004 2.8e-08 63.9 80 35.0
Cpa.g.sc43.118 Carica papaya HOM05D004758 ORTHO05D006063 3.7e-08 63.5 76 42.1
Cpa.g.sc2.86 Carica papaya HOM05D000003 ORTHO05D000004 4.8e-08 63.2 80 42.5
Cpa.g.sc20.36 Carica papaya HOM05D005630 ORTHO05D006979 8.2e-08 62.4 80 38.8
Cpa.g.sc235.8 Carica papaya HOM05D000003 ORTHO05D000004 8.2e-08 62.4 80 40.0
Cpa.g.sc73.85 Carica papaya HOM05D000003 ORTHO05D000004 1.1e-07 62.0 70 45.7
Cpa.g.sc23.130 Carica papaya HOM05D000003 ORTHO05D000004 1.4e-07 61.6 80 42.5
Cpa.g.sc63.14 Carica papaya HOM05D000003 ORTHO05D000004 1.8e-07 61.2 80 43.8
Cpa.g.sc76.45 Carica papaya HOM05D000003 ORTHO05D000004 2.4e-07 60.8 79 38.0
Os01g0261500 Oryza sativa ssp. japonica HOM05D007079 ORTHO05D009006 2.4e-07 60.8 53 50.9
Cpa.g.sc471.2 Carica papaya HOM05D000003 ORTHO05D000004 3.1e-07 60.5 80 38.8
QL05p062602 Quercus lobata HOM05D001008 ORTHO05D009098 4.1e-07 60.1 79 36.7
Cpa.g.sc139.50 Carica papaya HOM05D000003 ORTHO05D000004 1.2e-06 58.5 77 40.3
QL09p047247 Quercus lobata HOM05D000003 ORTHO05D001231 1.2e-06 58.5 83 37.3
Cpa.g.sc202.9 Carica papaya HOM05D000003 ORTHO05D000004 2.0e-06 57.8 75 38.7
QL05p086823 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-06 57.8 79 36.7
QL12p026404 Quercus lobata HOM05D000003 ORTHO05D000004 2.0e-06 57.8 79 36.7
Cpa.g.sc1998.1 Carica papaya HOM05D000003 ORTHO05D000004 2.6e-06 57.4 80 40.0
QL10p005473 Quercus lobata HOM05D000230 ORTHO05D000176 2.6e-06 57.4 79 35.4
Cpa.g.sc10.170 Carica papaya HOM05D000003 ORTHO05D000004 3.5e-06 57.0 79 38.0
MBI14_g10150_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 4.5e-06 56.6 81 35.8
Cpa.g.sc176.22 Carica papaya HOM05D000003 ORTHO05D000004 5.9e-06 56.2 74 33.8
Cpa.g.sc32.75 Carica papaya HOM05D000003 ORTHO05D000004 5.9e-06 56.2 72 41.7
Cpa.g.sc74.78 Carica papaya HOM05D000003 ORTHO05D000004 7.7e-06 55.8 80 37.5


User provided reference genes

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