Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc140.53 Carica papaya HOM05D006889 ORTHO05D008614 3.8e-164 581.6 338 100.0
Ciclev10012044m.g Citrus clementina HOM05D006889 ORTHO05D008614 2.5e-115 419.5 359 69.9
Prupe.2G323000 Prunus persica HOM05D006889 ORTHO05D008614 2.6e-112 409.5 363 68.0
Atru.chr12.2063 Acer truncatum HOM05D006889 ORTHO05D008614 5.8e-112 408.3 359 69.9
Manes.09G119000 Manihot esculenta HOM05D006889 ORTHO05D008614 7.0e-110 401.4 363 68.0
QL09p026702 Quercus lobata HOM05D006889 ORTHO05D008614 1.2e-109 400.6 361 68.7
Haze_22241 Corylus avellana HOM05D006889 ORTHO05D008614 1.0e-108 397.5 359 69.9
GSVIVG01024467001 Vitis vinifera HOM05D006889 ORTHO05D008614 1.3e-108 397.1 361 67.6
RcHm_v2.0_Chr1g0383401 Rosa chinensis HOM05D006889 ORTHO05D008614 1.7e-108 396.7 361 64.0
Gohir.A06G144633 Gossypium hirsutum HOM05D006889 ORTHO05D008614 3.0e-108 396.0 361 66.5
Gorai.010G175600 Gossypium raimondii HOM05D006889 ORTHO05D008614 6.6e-108 394.8 361 66.5
FAN03G0535 Fragaria x ananassa HOM05D006889 ORTHO05D008614 1.6e-106 390.2 350 62.3
Thecc.06G017600 Theobroma cacao HOM05D006889 ORTHO05D008614 3.6e-106 389.0 362 66.6
THA.LOC104805469 Tarenaya hassleriana HOM05D006889 ORTHO05D008614 2.6e-104 382.9 363 65.6
Aa31LG5G21960 Aethionema arabicum HOM05D006889 ORTHO05D008614 5.8e-104 381.7 373 61.1
Migut.F00816 Erythranthe guttata HOM05D006889 ORTHO05D008614 5.8e-104 381.7 364 62.1
Potri.001G412800 Populus trichocarpa HOM05D006889 ORTHO05D008614 5.8e-104 381.7 361 66.2
FAN10G1689 Fragaria x ananassa HOM05D006889 ORTHO05D008614 7.5e-104 381.3 350 61.7
Sabra16G0274900 Salix brachista HOM05D006889 ORTHO05D008614 2.2e-103 379.8 380 62.9
TAR369G0178 Trochodendron aralioides HOM05D006889 ORTHO05D008614 2.2e-103 379.8 363 65.0
FAN10G2743 Fragaria x ananassa HOM05D006889 ORTHO05D008614 2.9e-103 379.4 350 61.4
Eucgr.K00107 Eucalyptus grandis HOM05D006889 ORTHO05D008614 8.3e-103 377.9 361 60.9
FvH4_7g33430 Fragaria vesca HOM05D006889 ORTHO05D008614 8.3e-103 377.9 350 62.3
Dinv25463 Davidia involucrata HOM05D006889 ORTHO05D008614 5.4e-102 375.2 349 61.0
Lalb_Chr13g0293181 Lupinus albus HOM05D006889 ORTHO05D008614 1.6e-101 373.6 360 62.5
CiPaw.07G182100 Carya illinoinensis HOM05D006889 ORTHO05D008614 2.1e-101 373.2 334 70.7
Carub.0004s1859 Capsella rubella HOM05D006889 ORTHO05D008614 3.0e-100 369.4 367 59.7
Nn6g34807 Nelumbo nucifera HOM05D006889 ORTHO05D008614 5.1e-100 368.6 376 62.8
Oeu033252.2 Olea europaea HOM05D006889 ORTHO05D008614 7.3e-99 364.8 403 56.1
CSS0010313 Camellia sinensis var. sinensis HOM05D006889 ORTHO05D008614 9.5e-99 364.4 339 61.4
Solyc04g009830.3 Solanum lycopersicum HOM05D006889 ORTHO05D008614 3.6e-98 362.5 364 63.2
AT2G36740 Arabidopsis thaliana HOM05D006889 ORTHO05D008614 3.4e-96 355.9 368 58.2
Sopen04g004970 Solanum pennellii HOM05D006889 ORTHO05D008614 4.4e-96 355.5 364 62.6
AL4G32960 Arabidopsis lyrata HOM05D006889 ORTHO05D008614 5.8e-96 355.1 367 58.3
MBI14_g11688_MAGBIO Magnolia biondii HOM05D006889 ORTHO05D008614 5.8e-96 355.1 374 61.8
SalBow3G4178 Salvia bowleyana HOM05D006889 ORTHO05D008614 1.7e-95 353.6 381 61.2
TWI60G1635 Tripterygium wilfordii HOM05D006889 ORTHO05D008614 8.4e-95 351.3 363 61.7
CDE08G0956 Ceratophyllum demersum HOM05D006889 ORTHO05D008614 1.1e-94 350.9 355 62.8
PGSC0003DMG400025437 Solanum tuberosum HOM05D006889 ORTHO05D008614 1.1e-94 350.9 383 61.4
FAN01G0055 Fragaria x ananassa HOM05D006889 ORTHO05D008614 1.4e-94 350.5 330 60.0
ECA238G0057 Erigeron canadensis HOM05D006889 ORTHO05D008614 1.9e-94 350.1 375 60.5
Sabra16G0274600 Salix brachista HOM05D006889 ORTHO05D008614 2.4e-94 349.7 396 59.1
Cc02_g09110 Coffea canephora HOM05D006889 ORTHO05D008614 3.2e-94 349.4 365 59.7
PSO384G0326 Papaver somniferum HOM05D006889 ORTHO05D008614 9.2e-94 347.8 373 57.6
Ca_18207_v3 Cicer arietinum L. HOM05D006889 ORTHO05D008614 1.7e-92 343.6 353 63.7
SGA_v2.0_scaffold62G21307 Striga asiatica HOM05D006889 ORTHO05D008614 3.0e-92 342.8 381 57.0
A05p09120 Brassica napus HOM05D006889 ORTHO05D008614 6.6e-92 341.7 365 58.6
Lj4g0013326 Lotus japonicus HOM05D006889 ORTHO05D008614 6.6e-92 341.7 357 59.7
BraA05t19868Z Brassica rapa HOM05D006889 ORTHO05D008614 1.5e-91 340.5 365 58.4
Aqoxy4G02722 Aquilegia oxysepala HOM05D006889 ORTHO05D008614 3.3e-91 339.3 363 59.8
BolC4t22783H Brassica oleracea HOM05D006889 ORTHO05D008614 9.6e-91 337.8 363 58.7
C04p11290 Brassica napus HOM05D006889 ORTHO05D008614 2.8e-90 336.3 363 58.7
Glyma.05G136000 Glycine max HOM05D006889 ORTHO05D008614 2.8e-90 336.3 358 61.2
BcaC02g11793 Brassica carinata HOM05D006889 ORTHO05D008614 3.6e-90 335.9 363 58.7
BolC4t22767H Brassica oleracea HOM05D006889 ORTHO05D008614 3.6e-90 335.9 363 58.7
Nitab4.5_0002651g0040 Nicotiana tabacum HOM05D006889 ORTHO05D008614 1.8e-89 333.6 355 61.1
vmacro10779 Vaccinium macrocarpon HOM05D006889 ORTHO05D008614 5.2e-89 332.0 350 64.3
Actinidia31405 Actinidia chinensis HOM05D006889 ORTHO05D008614 8.9e-89 331.3 298 66.8
CsaV3_5G005080 Cucumis sativus L. HOM05D006889 ORTHO05D008614 1.5e-88 330.5 362 60.8
Phvul.002G186100 Phaseolus vulgaris HOM05D006889 ORTHO05D008614 3.4e-88 329.3 363 58.7
CAN.G186.71 Capsicum annuum HOM05D006889 ORTHO05D008614 1.7e-87 327.0 341 59.5
PSO339G0304 Papaver somniferum HOM05D006889 ORTHO05D008614 1.7e-87 327.0 373 55.5
Psat7g087400 Pisum sativum HOM05D006889 ORTHO05D008614 3.8e-87 325.9 354 62.7
BcaB02g09334 Brassica carinata HOM05D006889 ORTHO05D008614 4.9e-87 325.5 366 58.5
Nitab4.5_0000930g0060 Nicotiana tabacum HOM05D006889 ORTHO05D008614 2.7e-85 319.7 349 62.5
MD07G1304400 Malus domestica HOM05D006889 ORTHO05D008614 6.0e-85 318.5 363 56.7
Hma1.2p1_0164F.1_g073300 Hydrangea macrophylla HOM05D006889 ORTHO05D008614 7.8e-85 318.2 298 63.8
Os08g0192400 Oryza sativa ssp. japonica HOM05D006889 ORTHO05D008614 7.8e-85 318.2 363 57.0
HanXRQChr07g0200571 Helianthus annuus HOM05D006889 ORTHO05D008614 1.0e-84 317.8 381 58.3
arahy.Tifrunner.gnm1.ann1.T52I9D Arachis hypogaea HOM05D006889 ORTHO05D008614 1.7e-84 317.0 379 58.3
Sed0014561 Sechium edule HOM05D006889 ORTHO05D008614 2.3e-84 316.6 362 58.0
Gohir.D06G150400 Gossypium hirsutum HOM05D006889 ORTHO05D008614 1.1e-83 314.3 278 64.4
MD07G1075300 Malus domestica HOM05D006889 ORTHO05D008614 1.1e-83 314.3 378 57.7
HPP92_000052 Vanilla planifolia HOM05D006889 ORTHO05D008614 9.6e-83 311.2 343 58.3
unitig_747.g21800 Utricularia gibba HOM05D006889 ORTHO05D008614 1.1e-81 307.8 342 59.1
arahy.Tifrunner.gnm1.ann1.I4BD9U Arachis hypogaea HOM05D006889 ORTHO05D008614 3.4e-80 302.8 408 53.9
PGR142G0052 Punica granatum HOM05D006889 ORTHO05D008614 1.7e-79 300.4 365 56.2
Hund18033 Selenicereus undatus HOM05D006889 ORTHO05D008614 4.9e-79 298.9 371 54.4
ATR0081G022 Amborella trichopoda HOM05D006889 ORTHO05D008614 8.4e-79 298.1 299 65.9
MSTRG.4328 Avicennia marina HOM05D006889 ORTHO05D008614 8.4e-79 298.1 364 60.2
EL10Ac8g18884 Beta vulgaris HOM05D006889 ORTHO05D008614 8.4e-79 298.1 404 53.7
Thhalv10016833m.g Eutrema salsugineum HOM05D006889 ORTHO05D008614 9.3e-78 294.7 362 51.9
Sp4g19020 Schrenkiella parvula HOM05D006889 ORTHO05D008614 1.0e-76 291.2 362 51.7
Lsat_1_v5_gn_2_107601 Lactuca sativa HOM05D006889 ORTHO05D008614 3.7e-74 282.7 340 57.6
Sc08g0005450 Simmondsia chinensis HOM05D006889 ORTHO05D008614 3.1e-73 279.6 301 58.8
CARHR131100 Cardamine hirsuta HOM05D006889 ORTHO05D008614 3.4e-72 276.2 366 51.1
Peaxi162Scf00135g00913 Petunia axillaris HOM05D006889 ORTHO05D008614 7.6e-72 275.0 303 61.1
Ah.14g084260 Amaranthus hybridus HOM05D006889 ORTHO05D008614 7.1e-70 268.5 362 48.9
TPR.G11931 Trifolium pratense HOM05D006889 ORTHO05D008614 1.3e-68 264.2 333 58.9
Zm00001eb260210 Zea mays HOM05D006889 ORTHO05D008614 1.9e-67 260.4 363 46.3
MELO3C005447.2 Cucumis melo HOM05D006889 ORTHO05D008614 4.2e-62 242.7 239 68.2
Rhsim09G0213900 Rhododendron simsii HOM05D006889 ORTHO05D008614 1.1e-59 234.6 356 47.5
Rhsim01G0067600 Rhododendron simsii HOM05D006889 ORTHO05D008614 3.7e-58 229.6 349 47.3
SMO165G0047 Selaginella moellendorffii HOM05D006889 ORTHO05D008614 3.7e-58 229.6 291 49.1
COL.COLO4_31129 Corchorus olitorius HOM05D000112 ORTHO05D000564 2.4e-57 226.9 311 53.4
AUR62039766 Chenopodium quinoa HOM05D006889 ORTHO05D008614 4.1e-57 226.1 251 64.1
AUR62028393 Chenopodium quinoa HOM05D006889 ORTHO05D008614 6.5e-55 218.8 389 45.8
DCAR_030975 Daucus carota HOM05D006889 ORTHO05D008614 5.5e-54 215.7 324 44.8
Pp3c14_17650 Physcomitrium patens HOM05D006889 ORTHO05D008614 1.3e-52 211.1 374 44.9
SEGI_10499 Sequoiadendron giganteum HOM05D006889 ORTHO05D008614 2.1e-45 187.2 280 48.2
Gohir.D08G083500 Gossypium hirsutum HOM05D006889 ORTHO05D008614 4.6e-45 186.0 173 61.8
Gorai.004G087700 Gossypium raimondii HOM05D006889 ORTHO05D008614 1.1e-41 174.9 196 55.1
Mapoly0001s0482 Marchantia polymorpha HOM05D006889 ORTHO05D008614 2.4e-41 173.7 207 51.2
DCAR_030020 Daucus carota HOM05D006889 ORTHO05D008614 2.6e-40 170.2 252 45.2
CBR_g38961 Chara braunii HOM05D006889 ORTHO05D008614 1.0e-36 158.3 341 40.8
TPR.G8913 Trifolium pratense HOM05D006889 ORTHO05D008614 2.8e-34 150.2 94 89.4
SEGI_12666 Sequoiadendron giganteum HOM05D006889 ORTHO05D008614 3.8e-31 139.8 158 51.3
ClCG01G004860 Citrullus lanatus HOM05D006889 ORTHO05D008614 4.2e-30 136.3 199 55.3
TPR.G34755 Trifolium pratense HOM05D006889 ORTHO05D008614 1.6e-21 107.8 62 91.9
Gorai.005G015000 Gossypium raimondii HOM05D004753 ORTHO05D005920 6.1e-21 105.9 173 45.1
Gohir.D02G011800 Gossypium hirsutum HOM05D004753 ORTHO05D005920 1.8e-20 104.4 173 44.5
SHI02511 Sapria himalayana HOM05D006889 ORTHO05D008614 2.3e-20 104.0 68 83.8
MCO15G439 Micromonas commoda HOM05D006889 ORTHO05D008614 1.6e-13 81.3 302 32.8
Gohir.D04G081932 Gossypium hirsutum HOM05D004753 ORTHO05D005920 4.7e-13 79.7 63 68.3
Cre17.g728200 Chlamydomonas reinhardtii HOM05D006889 ORTHO05D008614 1.4e-12 78.2 299 33.4
FAN28G2910 Fragaria x ananassa HOM05D006889 ORTHO05D008614 4.0e-12 76.6 151 39.1
SHI02510 Sapria himalayana HOM05D006889 ORTHO05D008614 2.6e-11 73.9 37 89.2
SHI02512 Sapria himalayana HOM05D006889 ORTHO05D008614 3.4e-11 73.6 90 48.9
PRCOL_00000609 Prasinoderma coloniale HOM05D006889 ORTHO05D008614 4.1e-09 66.6 123 33.3
TPR.G34759 Trifolium pratense HOM05D006889 ORTHO05D008614 4.5e-08 63.2 101 39.6
Cfa024449 Carpinus fangiana HOM05D006889 ORTHO05D008614 2.5e-06 57.4 72 40.3


User provided reference genes

Program Settings