Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.98 Carica papaya HOM05D006569 ORTHO05D007515 0.0e+00 1833.9 1280 100.0
Potri.017G086000 Populus trichocarpa HOM05D006569 ORTHO05D007515 1.5e-253 880.6 1086 49.7
Manes.01G092900 Manihot esculenta HOM05D006569 ORTHO05D007515 4.5e-242 842.4 1086 50.0
Sabra17G0075800 Salix brachista HOM05D006569 ORTHO05D007515 8.5e-241 838.2 1072 47.5
CANSAT64G0455 Cannabis sativa HOM05D006569 ORTHO05D007515 7.5e-237 825.1 1099 51.2
Dinv33774 Davidia involucrata HOM05D006569 ORTHO05D007515 3.7e-236 822.8 1041 59.1
TAR371G0591 Trochodendron aralioides HOM05D006569 ORTHO05D007515 3.0e-230 803.1 1035 51.8
TWI60G0939 Tripterygium wilfordii HOM05D006569 ORTHO05D007515 5.2e-230 802.4 1067 49.5
FAN05G0252 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.3e-228 797.7 1081 47.9
GSVIVG01011442001 Vitis vinifera HOM05D006569 ORTHO05D007515 2.4e-227 793.5 1035 58.3
Ciclev10013587m.g Citrus clementina HOM05D006569 ORTHO05D007515 9.2e-227 791.6 1019 56.4
QL02p053824 Quercus lobata HOM05D006569 ORTHO05D007515 1.0e-225 788.1 1076 56.2
Atru.chr8.291 Acer truncatum HOM05D006569 ORTHO05D007515 1.3e-225 787.7 969 53.4
CSS0028247 Camellia sinensis var. sinensis HOM05D006569 ORTHO05D007515 5.0e-225 785.8 1039 50.9
MD09G1053400 Malus domestica HOM05D006569 ORTHO05D007515 1.2e-223 781.2 1046 48.2
Rhsim10G0036300 Rhododendron simsii HOM05D006569 ORTHO05D007515 1.4e-219 767.7 1061 48.5
AT5G15280 Arabidopsis thaliana HOM05D006569 ORTHO05D007515 1.7e-217 760.8 1078 46.0
CiPaw.04G004700 Carya illinoinensis HOM05D006569 ORTHO05D007515 4.4e-213 746.1 1057 55.1
Sp6g28790 Schrenkiella parvula HOM05D006569 ORTHO05D007515 2.9e-212 743.4 1064 48.5
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 4.9e-212 742.7 991 48.6
AL6G26150 Arabidopsis lyrata HOM05D006569 ORTHO05D007515 6.4e-212 742.3 1080 43.4
Prupe.3G265200 Prunus persica HOM05D006569 ORTHO05D007515 5.0e-209 732.6 1016 50.1
FAN14G1478 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.5e-208 731.1 1058 46.5
FAN02G1154 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.4e-206 724.5 1053 51.7
CsaV3_7G024320 Cucumis sativus L. HOM05D006569 ORTHO05D007515 8.9e-206 721.8 1029 47.4
CARHR198030 Cardamine hirsuta HOM05D006569 ORTHO05D007515 2.4e-203 713.8 1081 45.5
Thhalv10012473m.g Eutrema salsugineum HOM05D006569 ORTHO05D007515 1.9e-200 704.1 1079 46.9
arahy.Tifrunner.gnm1.ann1.80L4ZA Arachis hypogaea HOM05D006569 ORTHO05D007515 7.3e-200 702.2 1002 45.1
Lalb_Chr15g0081471 Lupinus albus HOM05D006569 ORTHO05D007515 1.2e-199 701.4 1035 47.4
Eucgr.I01955 Eucalyptus grandis HOM05D006569 ORTHO05D007515 1.5e-197 694.5 1030 45.6
FAN09G2200 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.9e-196 690.3 1008 45.4
BcaNung03317 Brassica carinata HOM05D006569 ORTHO05D007515 3.0e-193 680.2 999 47.1
Hund15592 Selenicereus undatus HOM05D006569 ORTHO05D007515 6.6e-193 679.1 1016 46.7
Sc10g0003480 Simmondsia chinensis HOM05D006569 ORTHO05D007515 1.1e-192 678.3 1079 48.0
THA.LOC104822352 Tarenaya hassleriana HOM05D006569 ORTHO05D007515 1.9e-192 677.6 960 45.4
Duzib264G1306 Durio zibethinus HOM05D006569 ORTHO05D007515 2.6e-189 667.2 968 51.1
MELO3C023650.2 Cucumis melo HOM05D006569 ORTHO05D007515 9.9e-189 665.2 1047 45.3
Cfa007985 Carpinus fangiana HOM05D006569 ORTHO05D007515 1.2e-186 658.3 966 56.9
ClCG09G010340 Citrullus lanatus HOM05D006569 ORTHO05D007515 5.1e-185 652.9 1081 51.4
Oeu010220.1 Olea europaea HOM05D006569 ORTHO05D007515 7.6e-181 639.0 999 50.8
SGA_v2.0_scaffold236G43766 Striga asiatica HOM05D006569 ORTHO05D007515 5.1e-177 626.3 1054 40.6
Haze_14089 Corylus avellana HOM05D006569 ORTHO05D007515 2.5e-176 624.0 1042 52.5
BraA02t05270Z Brassica rapa HOM05D006569 ORTHO05D007515 7.4e-176 622.5 1017 40.1
Sed0017024 Sechium edule HOM05D006569 ORTHO05D007515 1.3e-175 621.7 1047 44.2
RcHm_v2.0_Chr2g0167491 Rosa chinensis HOM05D006569 ORTHO05D007515 3.7e-175 620.2 1052 43.1
EL10Ac2g03001 Beta vulgaris HOM05D006569 ORTHO05D007515 3.1e-174 617.1 1045 43.7
TPR.G33795 Trifolium pratense HOM05D006569 ORTHO05D007515 4.9e-172 609.8 996 48.9
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 5.5e-171 606.3 1048 43.5
Cc07_g03540 Coffea canephora HOM05D006569 ORTHO05D007515 2.3e-169 600.9 1050 47.6
Lju41C9T14 Lonicera japonica HOM05D006569 ORTHO05D007515 5.1e-169 599.7 797 49.6
FvH4_6g48150 Fragaria vesca HOM05D006569 ORTHO05D007515 6.7e-169 599.4 876 45.5
Aa31LG11G14260 Aethionema arabicum HOM05D006569 ORTHO05D007515 3.3e-168 597.0 992 45.1
Medtr3g053000 Medicago truncatula HOM05D006569 ORTHO05D007515 3.1e-166 590.5 999 42.8
Lj6g0009481 Lotus japonicus HOM05D006569 ORTHO05D007515 6.9e-166 589.3 1023 42.7
SalBow6G2371 Salvia bowleyana HOM05D006569 ORTHO05D007515 6.9e-166 589.3 1007 44.0
Lsat_1_v5_gn_2_89461 Lactuca sativa HOM05D006569 ORTHO05D007515 2.6e-165 587.4 1041 42.2
BcaC03g13417 Brassica carinata HOM05D006569 ORTHO05D007515 2.9e-164 583.9 1046 39.0
C02p07640 Brassica napus HOM05D006569 ORTHO05D007515 3.8e-164 583.6 1046 39.0
BolC2t06696H Brassica oleracea HOM05D006569 ORTHO05D007515 5.5e-163 579.7 1046 38.9
AUR62018101 Chenopodium quinoa HOM05D006569 ORTHO05D007515 5.5e-163 579.7 1064 46.1
Psat5g175080 Pisum sativum HOM05D006569 ORTHO05D007515 1.0e-161 575.5 993 43.6
AUR62034434 Chenopodium quinoa HOM05D006569 ORTHO05D007515 1.1e-160 572.0 1054 45.1
PGR004G0299 Punica granatum HOM05D006569 ORTHO05D007515 3.1e-158 563.9 1079 39.9
MSTRG.15471 Avicennia marina HOM05D006569 ORTHO05D007515 8.5e-156 555.8 1062 48.7
Solyc02g067200.4 Solanum lycopersicum HOM05D006569 ORTHO05D007515 7.4e-152 542.7 1042 32.8
Aqoxy3G03442 Aquilegia oxysepala HOM05D006569 ORTHO05D007515 3.7e-151 540.4 755 48.1
DCAR_021661 Daucus carota HOM05D006569 ORTHO05D007515 1.4e-150 538.5 781 47.6
Ca_14754_v3 Cicer arietinum L. HOM05D006569 ORTHO05D007515 1.2e-149 535.4 914 46.0
ECA238G4289 Erigeron canadensis HOM05D006569 ORTHO05D007515 3.4e-149 533.9 912 40.9
Sopen02g016380 Solanum pennellii HOM05D006569 ORTHO05D007515 4.5e-149 533.5 788 37.9
Glyma.18G093100 Glycine max HOM05D006569 ORTHO05D007515 2.9e-148 530.8 999 42.1
PGSC0003DMG400025133 Solanum tuberosum HOM05D006569 ORTHO05D007515 3.2e-147 527.3 786 37.5
Nitab4.5_0003653g0010 Nicotiana tabacum HOM05D006569 ORTHO05D007515 1.2e-146 525.4 787 37.1
Nitab4.5_0000212g0030 Nicotiana tabacum HOM05D006569 ORTHO05D007515 1.6e-146 525.0 786 38.8
Ah.10g031720 Amaranthus hybridus HOM05D006569 ORTHO05D007515 3.3e-144 517.3 963 42.3
Peaxi162Scf00011g00263 Petunia axillaris HOM05D006569 ORTHO05D007515 4.5e-141 506.9 947 41.5
PSO832G0544 Papaver somniferum HOM05D006569 ORTHO05D007515 6.1e-138 496.5 721 50.3
CAN.G1103.13 Capsicum annuum HOM05D006569 ORTHO05D007515 2.6e-136 491.1 773 40.5
PSO013G0141 Papaver somniferum HOM05D006569 ORTHO05D007515 4.4e-136 490.3 718 50.0
VMungo0540G0528 Vigna mungo HOM05D006569 ORTHO05D007515 2.8e-135 487.6 997 40.2
HanXRQChr07g0199321 Helianthus annuus HOM05D006569 ORTHO05D007515 4.2e-131 473.8 902 32.2
Zm00001eb005280 Zea mays HOM05D006569 ORTHO05D007515 1.1e-118 432.6 1042 28.9
MBI05_g41591_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.3e-107 394.0 1014 39.4
A02p02990 Brassica napus HOM05D006569 ORTHO05D007515 1.6e-106 392.1 761 40.3
COL.COLO4_10330 Corchorus olitorius HOM05D006569 ORTHO05D007515 4.3e-99 367.5 318 54.4
FAN09G3888 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.0e-96 358.6 622 49.8
ATR1145G048 Amborella trichopoda HOM05D006569 ORTHO05D007515 6.4e-95 353.6 959 44.2
MBI05_g10764_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 1.9e-91 342.0 942 31.7
HPP92_012798 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.6e-88 331.6 906 26.9
CDE04G0154 Ceratophyllum demersum HOM05D006569 ORTHO05D007515 4.1e-86 324.3 626 31.3
Phvul.006G046500 Phaseolus vulgaris HOM05D006569 ORTHO05D007515 7.1e-86 323.6 607 42.2
FvH4_6g47953 Fragaria vesca HOM05D006569 ORTHO05D007515 1.4e-65 256.1 352 55.7
FAN05G1756 Fragaria x ananassa HOM05D006569 ORTHO05D007515 4.0e-65 254.6 341 62.5
FAN09G1632 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.0e-64 252.3 305 46.6
RcHm_v2.0_Chr2g0167581 Rosa chinensis HOM05D006569 ORTHO05D007515 7.6e-56 223.8 225 49.8
Thecc.04G085700 Theobroma cacao HOM05D006569 ORTHO05D007515 6.5e-55 220.7 213 55.9
RcHm_v2.0_Chr2g0167571 Rosa chinensis HOM05D006569 ORTHO05D007515 7.9e-53 213.8 192 54.2
Glyma.18G108202 Glycine max HOM05D006569 ORTHO05D007515 2.8e-50 205.3 204 54.9
QL93p0100_0341 Quercus lobata HOM05D006569 ORTHO05D007515 1.8e-49 202.6 524 30.2
QL02p057930 Quercus lobata HOM05D006569 ORTHO05D007515 9.0e-49 200.3 530 30.0
QL08p010038 Quercus lobata HOM05D006569 ORTHO05D007515 5.7e-43 181.0 435 43.0
FvH4_6g48880 Fragaria vesca HOM05D006569 ORTHO05D007515 1.1e-38 166.8 182 46.7
FvH4_6g47954 Fragaria vesca HOM05D006569 ORTHO05D007515 7.2e-38 164.1 211 47.9
FAN14G0320 Fragaria x ananassa HOM05D006569 ORTHO05D007515 1.2e-37 163.3 211 47.4
Os03g0168400 Oryza sativa ssp. japonica HOM05D006569 ORTHO05D007515 9.7e-35 153.7 204 42.6
Thecc.04G085800 Theobroma cacao HOM05D006569 ORTHO05D007515 1.7e-26 126.3 339 30.7
HPP92_012677 Vanilla planifolia HOM05D006569 ORTHO05D007515 2.2e-26 125.9 444 24.5
Medtr3g052970 Medicago truncatula HOM05D006569 ORTHO05D007515 1.6e-21 109.8 111 50.5
SEGI_17455 Sequoiadendron giganteum HOM05D006569 ORTHO05D007515 5.7e-19 101.3 525 37.0
HanXRQChr05g0134551 Helianthus annuus HOM05D006569 ORTHO05D007515 6.3e-18 97.8 99 51.5
FAN09G4849 Fragaria x ananassa HOM05D006569 ORTHO05D007515 2.4e-17 95.9 146 46.6
ATR0974G001 Amborella trichopoda HOM05D006569 ORTHO05D007515 5.5e-14 84.7 90 45.6
MBI05_g36424_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 4.7e-13 81.6 234 28.6
Glyma.08G319450 Glycine max HOM05D006569 ORTHO05D007515 1.8e-12 79.7 87 46.0
FAN05G1232 Fragaria x ananassa HOM05D006569 ORTHO05D007515 3.0e-12 79.0 118 39.8
THA.LOC104808118 Tarenaya hassleriana HOM05D006918 ORTHO05D008525 1.1e-09 70.5 211 23.2
Eucgr.J03058 Eucalyptus grandis HOM05D000891 ORTHO05D000761 3.1e-09 68.9 190 24.2
HanXRQChr16g0524351 Helianthus annuus HOM05D006569 ORTHO05D007515 5.4e-09 68.2 86 31.4
Aa31LG4G440 Aethionema arabicum HOM05D000891 ORTHO05D000761 9.1e-09 67.4 181 25.4
Migut.D01063 Erythranthe guttata HOM05D000891 ORTHO05D000761 9.1e-09 67.4 174 25.9
Oeu002723.1 Olea europaea HOM05D007956 ORTHO05D010152 9.1e-09 67.4 267 24.7
Prupe.3G083000 Prunus persica HOM05D000891 ORTHO05D000761 9.1e-09 67.4 117 28.2
SalBow2G3131 Salvia bowleyana HOM05D000891 ORTHO05D000761 2.7e-08 65.9 131 26.7
Potri.001G171300 Populus trichocarpa HOM05D000891 ORTHO05D000761 3.5e-08 65.5 130 26.9
SHI20598 Sapria himalayana HOM05D000891 ORTHO05D000761 3.5e-08 65.5 132 25.8
ATR0322G078 Amborella trichopoda HOM05D000891 ORTHO05D000761 4.5e-08 65.1 130 28.5
CARHR074340 Cardamine hirsuta HOM05D000891 ORTHO05D000761 4.5e-08 65.1 183 23.0
A07p26530 Brassica napus HOM05D000891 ORTHO05D000761 1.0e-07 63.9 178 21.9
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 1.0e-07 63.9 230 23.9
SalBow2G1681 Salvia bowleyana HOM05D000891 ORTHO05D000761 1.3e-07 63.5 130 27.7
BcaB05g25293 Brassica carinata HOM05D000891 ORTHO05D000761 2.9e-07 62.4 170 21.8
Thhalv10018671m.g Eutrema salsugineum HOM05D000891 ORTHO05D000761 2.9e-07 62.4 178 21.3
Gohir.D06G192800 Gossypium hirsutum HOM05D000891 ORTHO05D000761 2.9e-07 62.4 178 25.3
Ca_09841_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 5.0e-07 61.6 182 25.3
MSTRG.4712 Avicennia marina HOM05D000891 ORTHO05D000761 6.5e-07 61.2 174 24.1
BcaB02g07294 Brassica carinata HOM05D000891 ORTHO05D000761 6.5e-07 61.2 178 21.3
Thhalv10018334m.g Eutrema salsugineum HOM05D006918 ORTHO05D008525 6.5e-07 61.2 204 20.6
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 8.5e-07 60.8 204 20.6
Sp5g35650 Schrenkiella parvula HOM05D000891 ORTHO05D000761 8.5e-07 60.8 178 22.5
BcaB01g04883 Brassica carinata HOM05D007340 ORTHO05D008979 1.1e-06 60.5 198 22.2
Thecc.03G157100 Theobroma cacao HOM05D003975 ORTHO05D009762 1.1e-06 60.5 254 23.6
Zm00001eb227290 Zea mays HOM05D000891 ORTHO05D000761 1.1e-06 60.5 173 22.0
A07p44220 Brassica napus HOM05D006918 ORTHO05D008525 1.5e-06 60.1 204 21.6
Atru.chr10.968 Acer truncatum HOM05D000891 ORTHO05D000761 1.9e-06 59.7 136 27.9
Actinidia35406 Actinidia chinensis HOM05D007390 ORTHO05D009114 1.9e-06 59.7 135 29.6
arahy.Tifrunner.gnm1.ann1.B0BY4Q Arachis hypogaea HOM05D000891 ORTHO05D000761 1.9e-06 59.7 170 21.2
arahy.Tifrunner.gnm1.ann1.LDS0KH Arachis hypogaea HOM05D000891 ORTHO05D000761 1.9e-06 59.7 170 21.2
Duzib160G0410 Durio zibethinus HOM05D000891 ORTHO05D000761 1.9e-06 59.7 192 21.9
Psat5g301640 Pisum sativum HOM05D000891 ORTHO05D000761 1.9e-06 59.7 131 25.2
BraA07t31930Z Brassica rapa HOM05D006918 ORTHO05D008525 2.5e-06 59.3 202 21.8
MBI05_g36421_MAGBIO Magnolia biondii HOM05D006569 ORTHO05D007515 2.5e-06 59.3 86 40.7
Actinidia26936 Actinidia chinensis HOM05D000891 ORTHO05D000761 3.2e-06 58.9 149 26.2
C06p52950 Brassica napus HOM05D006918 ORTHO05D008525 3.2e-06 58.9 205 21.0
Lalb_Chr14g0373751 Lupinus albus HOM05D000891 ORTHO05D000761 3.2e-06 58.9 130 24.6
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 3.2e-06 58.9 158 28.5
Thecc.05G003500 Theobroma cacao HOM05D008684 ORTHO05D010796 4.2e-06 58.5 235 23.8
CAN.G354.69 Capsicum annuum HOM05D007390 ORTHO05D009114 5.5e-06 58.2 151 27.2
CANSAT78G1681 Cannabis sativa HOM05D007570 ORTHO05D009365 7.2e-06 57.8 131 27.5
Duzib093G0470 Durio zibethinus HOM05D008684 ORTHO05D010796 7.2e-06 57.8 187 25.7
MD03G1142100 Malus domestica HOM05D007570 ORTHO05D009365 7.2e-06 57.8 147 28.6
SGA_v2.0_scaffold114G32030 Striga asiatica HOM05D007956 ORTHO05D010152 7.2e-06 57.8 255 22.0
TAR628G0602 Trochodendron aralioides HOM05D006556 ORTHO05D008146 7.2e-06 57.8 159 29.6


User provided reference genes

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