Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 0.0e+00 1084.3 523 100.0
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 5.6e-231 804.3 640 63.9
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 4.4e-228 794.7 639 63.1
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 6.4e-227 790.8 633 63.5
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 5.4e-226 787.7 638 62.7
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 1.2e-225 786.6 654 62.1
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 1.6e-225 786.2 644 62.6
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 4.6e-225 784.6 640 62.2
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 6.0e-225 784.3 641 62.1
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 1.7e-224 782.7 638 61.9
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 1.5e-223 779.6 644 61.8
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 2.5e-223 778.9 637 62.0
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 1.6e-222 776.2 637 61.7
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 4.7e-222 774.6 638 62.2
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 4.7e-222 774.6 637 62.5
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 6.2e-222 774.2 645 61.9
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 6.2e-222 774.2 637 61.7
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 1.8e-221 772.7 639 62.3
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 8.9e-221 770.4 640 61.2
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 1.5e-220 769.6 666 59.6
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 3.4e-220 768.5 648 61.0
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 4.4e-220 768.1 638 60.5
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 4.4e-220 768.1 649 61.2
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 4.4e-220 768.1 641 60.8
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 7.6e-220 767.3 639 61.7
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 1.3e-219 766.5 638 60.5
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 2.2e-219 765.8 610 63.3
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 1.1e-218 763.5 636 61.3
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 1.9e-218 762.7 639 60.3
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 1.9e-218 762.7 642 60.6
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 1.9e-218 762.7 639 61.2
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 2.4e-218 762.3 647 60.7
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 5.4e-218 761.1 647 60.7
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 5.4e-218 761.1 637 61.1
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 9.2e-218 760.4 610 63.0
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 9.2e-218 760.4 639 60.7
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 9.2e-218 760.4 639 60.9
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 1.2e-217 760.0 648 60.0
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 1.7e-216 756.1 624 61.7
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 3.9e-216 755.0 583 65.5
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 1.1e-215 753.4 689 57.9
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 1.1e-215 753.4 639 59.2
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 1.1e-215 753.4 639 59.2
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 1.9e-215 752.7 583 65.0
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 7.3e-215 750.7 639 59.9
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 9.6e-215 750.4 639 60.1
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 1.2e-214 750.0 624 61.4
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 8.1e-214 747.3 597 63.1
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 8.1e-214 747.3 619 61.6
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 1.4e-213 746.5 641 59.4
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 6.9e-213 744.2 636 58.8
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 9.0e-213 743.8 640 59.5
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 2.6e-212 742.3 649 59.6
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 5.8e-212 741.1 646 58.5
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 7.6e-212 740.7 635 59.5
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 1.3e-211 740.0 617 61.1
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 1.7e-211 739.6 641 59.1
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 3.8e-211 738.4 626 60.1
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 3.8e-211 738.4 640 59.2
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 4.9e-211 738.0 640 59.1
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 8.4e-211 737.3 617 60.1
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 1.4e-210 736.5 626 60.7
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 1.4e-210 736.5 658 57.4
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 2.4e-210 735.7 640 59.2
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 5.4e-210 734.6 640 59.1
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 3.5e-209 731.9 650 58.8
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 4.6e-209 731.5 626 60.2
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 6.0e-209 731.1 646 58.7
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 5.1e-208 728.0 639 58.5
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 6.6e-208 727.6 642 59.5
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 2.5e-207 725.7 617 61.8
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 1.6e-206 723.0 641 58.0
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 9.0e-205 717.2 639 57.3
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 2.0e-204 716.1 611 60.6
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 5.4e-202 708.0 643 58.0
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 1.2e-201 706.8 643 57.9
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 2.2e-195 686.0 607 60.6
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 8.4e-195 684.1 393 82.7
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 2.4e-194 682.6 608 58.4
Manes.17G118300 Manihot esculenta HOM05D005389 ORTHO05D008484 2.7e-193 679.1 566 61.0
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 1.1e-189 667.2 621 55.4
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 1.1e-189 667.2 637 54.0
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 1.4e-186 656.8 608 57.1
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 3.0e-184 649.0 612 54.6
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 9.3e-178 627.5 402 73.9
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 1.3e-176 623.6 578 55.7
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 1.3e-171 607.1 386 74.1
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 2.3e-168 596.3 640 51.2
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 5.7e-159 565.1 610 48.5
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 6.3e-158 561.6 342 79.2
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 9.7e-151 537.7 613 46.0
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 7.0e-149 531.6 605 46.0
TPR.G39126 Trifolium pratense HOM05D005389 ORTHO05D008484 1.5e-143 513.8 498 53.6
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 4.4e-143 512.3 300 81.3
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 7.5e-135 485.0 619 43.1
Peaxi162Scf00129g00824 Petunia axillaris HOM05D005389 ORTHO05D008484 5.6e-122 442.2 457 53.4
Nn4g22901 Nelumbo nucifera HOM05D005389 ORTHO05D008484 2.3e-115 420.2 445 51.5
Dinv35027 Davidia involucrata HOM05D005389 ORTHO05D008484 6.6e-107 392.1 409 52.3
Cfa024795 Carpinus fangiana HOM05D005389 ORTHO05D008484 8.1e-97 358.6 371 52.0
MCO14G282 Micromonas commoda HOM05D005389 ORTHO05D008484 1.0e-91 341.7 418 44.7
RcHm_v2.0_Chr7g0219571 Rosa chinensis HOM05D005389 ORTHO05D008484 1.9e-85 320.9 397 45.6
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 2.3e-83 313.9 223 71.3
SEGI_37358 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 4.0e-80 303.1 198 73.2
Actinidia36063 Actinidia chinensis HOM05D005389 ORTHO05D008484 1.3e-75 288.1 359 45.7
CARHR075600 Cardamine hirsuta HOM05D005389 ORTHO05D008484 3.5e-68 263.5 347 45.0
unitig_21.g20503 Utricularia gibba HOM05D005389 ORTHO05D008484 5.1e-59 233.0 350 39.7
unitig_21.g20502 Utricularia gibba HOM05D005389 ORTHO05D008484 5.5e-53 213.0 108 88.9
RcHm_v2.0_Chr7g0219581 Rosa chinensis HOM05D005389 ORTHO05D008484 1.7e-49 201.4 139 71.2
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 3.8e-38 163.7 107 73.8
Thhalv10020372m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.5e-37 161.8 130 62.3
BcaNung07363 Brassica carinata HOM05D005389 ORTHO05D008484 2.7e-36 157.5 119 65.5
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.0e-23 114.8 67 82.1
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 2.0e-23 114.8 67 82.1
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 2.7e-23 114.4 67 82.1
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 4.5e-23 113.6 67 82.1
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 4.5e-23 113.6 67 82.1
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 4.5e-23 113.6 67 82.1
SEGI_22900 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 5.9e-23 113.2 67 76.1
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.0e-22 112.5 67 80.6
SEGI_27782 Sequoiadendron giganteum HOM05D005389 ORTHO05D008484 1.3e-22 112.1 119 48.7
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 2.9e-22 110.9 75 70.7
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 2.9e-22 110.9 75 70.7
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 5.0e-22 110.2 81 67.9
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 6.6e-22 109.8 67 80.6
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 6.6e-22 109.8 79 68.4
Gohir.D11G223028 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.5e-21 108.6 67 77.6
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 7.2e-21 106.3 76 68.4
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.4e-19 102.1 75 65.3
Actinidia13460 Actinidia chinensis HOM05D001853 ORTHO05D001908 1.1e-16 92.4 70 65.7
Actinidia13461 Actinidia chinensis HOM05D005389 ORTHO05D008484 2.3e-14 84.7 74 56.8
MBI06_g07364_MAGBIO Magnolia biondii HOM05D006593 ORTHO05D008512 8.0e-12 76.3 428 25.7
Pp3c8_800 Physcomitrium patens HOM05D006593 ORTHO05D008512 2.0e-10 71.6 159 28.9
PSO017G0451 Papaver somniferum HOM05D006593 ORTHO05D008512 3.4e-10 70.9 331 23.6
Haze_03860 Corylus avellana HOM05D006593 ORTHO05D008512 7.5e-10 69.7 321 23.1
Ah.02g123650 Amaranthus hybridus HOM05D006593 ORTHO05D008512 9.8e-10 69.3 318 24.8
Sed0000560 Sechium edule HOM05D006593 ORTHO05D008512 1.3e-09 68.9 312 25.3
Rhsim10G0172300 Rhododendron simsii HOM05D006593 ORTHO05D008512 1.7e-09 68.6 322 24.8
MD15G1313700 Malus domestica HOM05D006593 ORTHO05D008512 2.2e-09 68.2 321 24.0
CsaV3_6G045050 Cucumis sativus L. HOM05D006593 ORTHO05D008512 2.9e-09 67.8 318 24.5
CiPaw.07G048200 Carya illinoinensis HOM05D006593 ORTHO05D008512 6.4e-09 66.6 327 25.1
Gohir.D03G042700 Gossypium hirsutum HOM05D006593 ORTHO05D008512 6.4e-09 66.6 321 23.4
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 8.3e-09 66.2 53 73.6
TWI53G0534 Tripterygium wilfordii HOM05D006593 ORTHO05D008512 8.3e-09 66.2 333 24.0
TAR628G0061 Trochodendron aralioides HOM05D006593 ORTHO05D008512 1.1e-08 65.9 321 23.7
Phvul.002G147900 Phaseolus vulgaris HOM05D006593 ORTHO05D008512 1.4e-08 65.5 161 30.4
RcHm_v2.0_Chr2g0111321 Rosa chinensis HOM05D006593 ORTHO05D008512 1.4e-08 65.5 338 24.6
FAN28G2735 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.9e-08 65.1 352 24.7
Ca_04534_v3 Cicer arietinum L. HOM05D006593 ORTHO05D008512 2.4e-08 64.7 161 29.8
Os02g0781600 Oryza sativa ssp. japonica HOM05D006593 ORTHO05D008512 2.4e-08 64.7 196 26.0
vmacro13002 Vaccinium macrocarpon HOM05D006593 ORTHO05D008512 2.4e-08 64.7 162 30.2
EL10Ac6g15212 Beta vulgaris HOM05D006593 ORTHO05D008512 3.2e-08 64.3 395 23.0
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 3.2e-08 64.3 35 85.7
Mapoly0005s0227 Marchantia polymorpha HOM05D006593 ORTHO05D008512 3.2e-08 64.3 321 25.2
CSS0021282 Camellia sinensis var. sinensis HOM05D006593 ORTHO05D008512 4.1e-08 63.9 321 24.0
Cfa006891 Carpinus fangiana HOM05D006593 ORTHO05D008512 4.1e-08 63.9 316 24.7
Gohir.A02G131300 Gossypium hirsutum HOM05D006593 ORTHO05D008512 4.1e-08 63.9 317 24.0
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 4.1e-08 63.9 39 87.2
ATR0665G270 Amborella trichopoda HOM05D006593 ORTHO05D008512 5.4e-08 63.5 149 28.2
FvH4_1g19740 Fragaria vesca HOM05D006593 ORTHO05D008512 5.4e-08 63.5 319 24.8
FAN19G1905 Fragaria x ananassa HOM05D006593 ORTHO05D008512 5.4e-08 63.5 319 24.8
Sc16g0000540 Simmondsia chinensis HOM05D006593 ORTHO05D004993 5.4e-08 63.5 160 30.6
unitig_748.g8644 Utricularia gibba HOM05D006593 ORTHO05D008512 5.4e-08 63.5 347 23.6
Gorai.003G043400 Gossypium raimondii HOM05D006593 ORTHO05D008512 9.2e-08 62.8 316 23.4
Medtr5g032210 Medicago truncatula HOM05D006593 ORTHO05D008512 9.2e-08 62.8 161 29.2
Nn5g29896 Nelumbo nucifera HOM05D006593 ORTHO05D008512 9.2e-08 62.8 322 23.0
PSO170G1479 Papaver somniferum HOM05D006593 ORTHO05D008512 9.2e-08 62.8 334 22.8
FAN26G1425 Fragaria x ananassa HOM05D006593 ORTHO05D008512 1.2e-07 62.4 319 24.8
Lsat_1_v5_gn_3_61401 Lactuca sativa HOM05D006593 ORTHO05D008512 1.2e-07 62.4 344 23.8
Potri.007G010600 Populus trichocarpa HOM05D006593 ORTHO05D008512 1.6e-07 62.0 323 23.2
TPR.G29973 Trifolium pratense HOM05D006593 ORTHO05D008512 2.7e-07 61.2 161 28.6
arahy.Tifrunner.gnm1.ann1.67PG0W Arachis hypogaea HOM05D006593 ORTHO05D008512 6.0e-07 60.1 162 27.8
arahy.Tifrunner.gnm1.ann1.ZAKH7Z Arachis hypogaea HOM05D006593 ORTHO05D008512 6.0e-07 60.1 162 27.8
Lj2g0020402 Lotus japonicus HOM05D006593 ORTHO05D008512 6.0e-07 60.1 161 28.6
Thhalv10000032m.g Eutrema salsugineum HOM05D006593 ORTHO05D008512 7.8e-07 59.7 326 21.5
Actinidia06518 Actinidia chinensis HOM05D006593 ORTHO05D008512 1.0e-06 59.3 323 25.4
AT2G22530 Arabidopsis thaliana HOM05D006593 ORTHO05D008512 1.0e-06 59.3 316 22.5
Lalb_Chr05g0216291 Lupinus albus HOM05D006593 ORTHO05D008512 1.0e-06 59.3 161 29.8
MCO01G549 Micromonas commoda HOM05D004630 ORTHO05D005727 1.0e-06 59.3 158 24.7
Cc07_g14190 Coffea canephora HOM05D006593 ORTHO05D008512 3.0e-06 57.8 319 23.8
Glyma.01G023700 Glycine max HOM05D006593 ORTHO05D008512 6.6e-06 56.6 161 29.2
Cpa.g.sc55.33 Carica papaya HOM05D006593 ORTHO05D008512 8.6e-06 56.2 164 29.3
Manes.13G098700 Manihot esculenta HOM05D006593 ORTHO05D008512 8.6e-06 56.2 319 22.6


User provided reference genes

Program Settings