Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 1.1e-121 439.9 212 100.0
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 2.7e-83 312.4 189 77.8
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 3.0e-82 308.9 213 71.8
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 1.5e-81 306.6 189 78.3
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 5.6e-81 304.7 202 72.3
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 5.6e-81 304.7 204 69.1
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 5.6e-81 304.7 204 69.1
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 7.3e-81 304.3 203 72.4
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 2.8e-80 302.4 193 74.1
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 4.8e-80 301.6 209 67.9
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 6.2e-80 301.2 209 68.4
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 8.1e-80 300.8 211 68.7
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 8.1e-80 300.8 206 69.4
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 1.1e-79 300.4 211 71.1
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.4e-79 300.1 204 69.1
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 1.4e-79 300.1 192 74.5
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 3.1e-79 298.9 209 69.9
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 6.9e-79 297.7 204 68.6
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 9.0e-79 297.4 213 69.0
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 2.0e-78 296.2 204 69.6
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 4.5e-78 295.0 197 70.6
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 9.9e-78 293.9 195 73.8
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.3e-77 293.5 193 73.1
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 2.2e-77 292.7 211 67.8
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.2e-77 292.7 210 67.1
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 2.9e-77 292.4 204 69.6
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 2.9e-77 292.4 177 76.8
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 6.4e-77 291.2 204 69.6
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 8.4e-77 290.8 204 70.6
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 8.4e-77 290.8 204 69.6
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.4e-76 290.0 194 72.2
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.9e-76 289.7 197 69.0
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 3.2e-76 288.9 194 71.6
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 5.4e-76 288.1 196 69.9
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 7.1e-76 287.7 208 67.8
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 7.1e-76 287.7 194 70.6
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 9.3e-76 287.3 195 70.8
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 9.3e-76 287.3 209 69.9
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.2e-75 287.0 195 70.8
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 2.1e-75 286.2 204 69.1
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 2.1e-75 286.2 190 73.2
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 2.1e-75 286.2 190 73.2
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 2.7e-75 285.8 198 67.7
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.0e-75 284.6 189 71.4
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.0e-75 284.6 189 71.4
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 6.0e-75 284.6 212 66.5
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 6.0e-75 284.6 191 68.6
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 7.9e-75 284.3 204 69.1
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 7.9e-75 284.3 191 71.2
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.3e-74 283.5 203 67.5
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 3.0e-74 282.3 191 70.2
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 3.0e-74 282.3 197 69.5
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 3.9e-74 282.0 191 70.2
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 6.7e-74 281.2 205 67.8
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 6.7e-74 281.2 168 75.0
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 8.7e-74 280.8 204 68.1
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 8.7e-74 280.8 207 68.1
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 1.5e-73 280.0 193 69.4
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 1.9e-73 279.6 190 68.4
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 1.9e-73 279.6 190 68.9
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 3.3e-73 278.9 191 69.1
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 5.6e-73 278.1 194 68.6
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 7.4e-73 277.7 189 67.7
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.3e-72 276.9 191 68.6
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 1.3e-72 276.9 167 74.3
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.6e-72 276.6 198 66.2
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 2.1e-72 276.2 200 66.0
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 3.7e-72 275.4 164 79.3
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 6.2e-72 274.6 181 72.4
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 6.2e-72 274.6 180 70.0
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.1e-71 273.9 191 70.2
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 1.4e-71 273.5 193 65.8
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.1e-71 272.3 187 69.5
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 4.0e-71 271.9 204 65.2
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 4.0e-71 271.9 203 64.0
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 4.0e-71 271.9 190 67.9
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 4.0e-71 271.9 197 67.0
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 5.3e-71 271.6 169 73.4
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.2e-70 270.4 190 67.4
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.2e-70 270.4 202 64.9
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.0e-70 269.6 191 66.5
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.6e-70 269.2 191 66.5
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 5.8e-70 268.1 190 66.8
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 5.8e-70 268.1 195 65.6
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 7.6e-70 267.7 196 63.3
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.3e-69 266.9 191 66.0
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 1.7e-69 266.5 218 63.8
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.8e-69 265.4 211 62.1
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.8e-69 265.4 211 62.1
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 8.4e-69 264.2 203 63.5
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 3.2e-68 262.3 191 65.4
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 5.5e-68 261.5 191 66.0
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 5.5e-68 261.5 216 63.4
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.1e-67 259.6 166 71.1
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 2.7e-67 259.2 193 63.7
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 7.9e-67 257.7 207 61.4
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 7.9e-67 257.7 192 64.1
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 3.0e-66 255.8 201 64.2
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 5.1e-66 255.0 201 60.7
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 1.9e-65 253.1 170 69.4
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 3.3e-65 252.3 174 68.4
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.1e-63 247.3 190 63.2
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 3.1e-63 245.7 192 64.6
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 2.0e-62 243.0 196 61.7
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 2.6e-62 242.7 194 62.4
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 3.4e-62 242.3 181 63.0
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 7.6e-62 241.1 173 65.9
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 1.3e-61 240.4 188 59.6
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 2.9e-61 239.2 153 74.5
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 1.4e-60 236.9 192 59.9
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 4.2e-60 235.3 146 71.2
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 7.2e-60 234.6 192 60.4
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 7.2e-60 234.6 192 60.4
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 7.2e-60 234.6 192 60.9
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 3.5e-59 232.3 192 60.4
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 5.7e-57 224.9 154 70.8
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 2.2e-56 223.0 311 43.1
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 1.1e-55 220.7 130 77.7
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 4.5e-54 215.3 186 57.0
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 2.9e-53 212.6 159 64.8
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 1.1e-52 210.7 177 59.3
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 2.5e-52 209.5 140 74.3
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 1.6e-51 206.8 195 52.3
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 2.1e-51 206.5 162 65.4
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 6.3e-48 194.9 165 55.2
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 4.8e-40 168.7 165 49.7
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.5e-36 157.1 168 45.2
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 1.9e-36 156.8 169 50.9
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.2e-36 156.0 195 45.1
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 3.0e-34 149.4 193 41.5
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 7.5e-33 144.8 159 46.5
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 1.5e-28 130.6 78 73.1
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 9.4e-28 127.9 185 34.6
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 1.2e-27 127.5 165 41.8
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 4.7e-19 99.0 181 34.3
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 4.7e-19 99.0 67 61.2
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 2.3e-13 80.1 115 44.3
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 7.3e-12 75.1 58 56.9
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.2e-09 67.8 62 58.1
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 7.5e-09 65.1 71 50.7


User provided reference genes

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