Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 5.0e-48 194.1 98 100.0
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 3.0e-29 131.7 98 63.3
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 1.2e-25 119.8 98 60.2
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 2.1e-22 109.0 95 61.1
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 2.1e-22 109.0 98 55.1
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 2.7e-22 108.6 97 59.8
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 1.4e-21 106.3 109 56.0
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.1e-20 103.2 93 59.1
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 2.6e-20 102.1 99 61.6
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 9.7e-20 100.1 98 53.1
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.7e-19 99.4 98 53.1
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.2e-19 99.0 96 54.2
FvH4_6g49680 Fragaria vesca HOM05D004965 ORTHO05D004401 2.2e-19 99.0 98 59.2
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 2.2e-19 99.0 98 53.1
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 2.8e-19 98.6 97 53.6
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 3.7e-19 98.2 89 57.3
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 4.8e-19 97.8 98 55.1
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 1.1e-18 96.7 98 57.1
FAN14G2761 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.4e-18 96.3 98 57.1
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.4e-18 95.5 98 57.1
FAN09G1906 Fragaria x ananassa HOM05D004965 ORTHO05D004401 2.4e-18 95.5 98 57.1
FAN05G5108 Fragaria x ananassa HOM05D004965 ORTHO05D004401 4.1e-18 94.7 98 57.1
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 5.3e-18 94.4 98 52.0
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.2e-17 93.2 98 50.0
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.0e-17 92.4 95 53.7
TWI56G0241 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 2.6e-17 92.0 100 51.0
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 3.5e-17 91.7 84 53.6
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.9e-17 90.9 98 50.0
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 1.0e-16 90.1 85 56.5
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 2.9e-16 88.6 96 52.1
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 2.9e-16 88.6 97 50.5
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 3.2e-15 85.1 99 47.5
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 5.5e-15 84.3 104 46.2
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 7.2e-15 84.0 86 55.8
CSS0011493 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 1.2e-14 83.2 82 54.9
Cc11_g13890 Coffea canephora HOM05D004965 ORTHO05D004401 1.6e-14 82.8 88 50.0
MD17G1044000 Malus domestica HOM05D004965 ORTHO05D004401 2.7e-14 82.0 79 53.2
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 3.6e-14 81.6 91 48.4
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 3.6e-14 81.6 97 48.5
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 4.7e-14 81.3 100 49.0
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 6.1e-14 80.9 91 48.4
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 8.0e-14 80.5 90 50.0
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 8.0e-14 80.5 96 51.0
Aqoxy3G03187 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 1.0e-13 80.1 100 46.0
TAR622G1192 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.4e-13 79.7 88 50.0
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 2.3e-13 79.0 100 51.0
Actinidia12285 Actinidia chinensis HOM05D004965 ORTHO05D004401 3.0e-13 78.6 99 48.5
Ciclev10033175m.g Citrus clementina HOM05D004965 ORTHO05D004401 4.0e-13 78.2 96 44.8
GSVIVG01020127001 Vitis vinifera HOM05D004965 ORTHO05D004401 4.0e-13 78.2 99 43.4
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 6.8e-13 77.4 93 50.5
Glyma.19G017400 Glycine max HOM05D004965 ORTHO05D004401 6.8e-13 77.4 100 46.0
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 8.8e-13 77.0 109 47.7
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 1.2e-12 76.6 99 47.5
Nn3g17067 Nelumbo nucifera HOM05D004965 ORTHO05D004401 1.5e-12 76.3 102 48.0
Dinv31145 Davidia involucrata HOM05D004965 ORTHO05D004401 2.0e-12 75.9 99 47.5
Nn4g22977 Nelumbo nucifera HOM05D004965 ORTHO05D004401 2.0e-12 75.9 99 49.5
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 2.6e-12 75.5 62 59.7
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 2.6e-12 75.5 91 48.4
Prupe.1G263100 Prunus persica HOM05D004965 ORTHO05D004401 3.4e-12 75.1 100 48.0
Duzib187G0871 Durio zibethinus HOM05D004965 ORTHO05D004401 5.7e-12 74.3 47 72.3
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 9.8e-12 73.6 94 47.9
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 1.3e-11 73.2 94 47.9
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 1.3e-11 73.2 94 48.9
Psat1g077560 Pisum sativum HOM05D004965 ORTHO05D004401 2.8e-11 72.0 98 45.9
CSS0014777 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 3.7e-11 71.6 85 47.1
Gorai.002G165000 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.7e-11 71.6 110 42.7
MSTRG.2369 Avicennia marina HOM05D004965 ORTHO05D004401 4.8e-11 71.2 101 44.6
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 6.3e-11 70.9 94 47.9
Gohir.A03G144700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.3e-11 70.9 97 46.4
TWI12G0653 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 6.3e-11 70.9 95 45.3
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 8.3e-11 70.5 98 44.9
Lalb_Chr06g0176581 Lupinus albus HOM05D004965 ORTHO05D004401 8.3e-11 70.5 91 51.6
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 1.1e-10 70.1 94 47.9
Duzib248G0243 Durio zibethinus HOM05D004965 ORTHO05D004401 1.1e-10 70.1 106 44.3
Gohir.A01G142000 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.1e-10 70.1 108 40.7
TPR.G32595 Trifolium pratense HOM05D004965 ORTHO05D004401 1.1e-10 70.1 100 44.0
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 2.4e-10 68.9 109 39.4
EL10Ac6g13083 Beta vulgaris HOM05D004965 ORTHO05D004401 3.1e-10 68.6 94 44.7
Duzib268G0529 Durio zibethinus HOM05D004965 ORTHO05D004401 3.1e-10 68.6 104 42.3
Medtr6g009390 Medicago truncatula HOM05D004965 ORTHO05D004401 3.1e-10 68.6 68 52.9
Potri.008G191500 Populus trichocarpa HOM05D004965 ORTHO05D004401 3.1e-10 68.6 108 44.4
Aqoxy3G00848 Aquilegia oxysepala HOM05D004965 ORTHO05D004401 4.1e-10 68.2 96 45.8
Solyc05g006610.4 Solanum lycopersicum HOM05D004965 ORTHO05D004401 4.1e-10 68.2 63 57.1
Sopen05g002550 Solanum pennellii HOM05D004965 ORTHO05D004401 4.1e-10 68.2 63 57.1
vmacro16304 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 5.4e-10 67.8 97 44.3
Gohir.D01G133500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 7.0e-10 67.4 110 41.8
MD16G1082900 Malus domestica HOM05D004965 ORTHO05D004401 7.0e-10 67.4 99 47.5
PGSC0003DMG400004191 Solanum tuberosum HOM05D004965 ORTHO05D004401 9.1e-10 67.0 92 41.3
CiPaw.06G078100 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.2e-09 66.6 94 46.8
Duzib251G0216 Durio zibethinus HOM05D004965 ORTHO05D004401 1.6e-09 66.2 114 41.2
CiPaw.05G143500 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.0e-09 65.9 99 43.4
DCAR_006716 Daucus carota HOM05D004965 ORTHO05D004401 2.0e-09 65.9 96 40.6
RcHm_v2.0_Chr4g0445011 Rosa chinensis HOM05D004965 ORTHO05D004401 2.0e-09 65.9 118 41.5
PGR083G1219 Punica granatum HOM05D004965 ORTHO05D004401 2.7e-09 65.5 101 43.6
FAN22G1750 Fragaria x ananassa HOM05D004965 ORTHO05D004401 3.5e-09 65.1 103 39.8
Gorai.005G188200 Gossypium raimondii HOM05D004965 ORTHO05D004401 3.5e-09 65.1 91 45.1
Potri.010G039800 Populus trichocarpa HOM05D004965 ORTHO05D004401 4.5e-09 64.7 98 41.8
PGR119G0489 Punica granatum HOM05D004965 ORTHO05D004401 4.5e-09 64.7 92 44.6
Atru.chr11.1915 Acer truncatum HOM05D004965 ORTHO05D004401 5.9e-09 64.3 115 35.7
BolC9t53314H Brassica oleracea HOM05D009946 ORTHO05D004401 5.9e-09 64.3 93 45.2
AUR62030559 Chenopodium quinoa HOM05D068275 ORTHO05D004401 5.9e-09 64.3 107 37.4
Manes.05G094200 Manihot esculenta HOM05D004965 ORTHO05D004401 5.9e-09 64.3 99 41.4
Lj2g0004313 Lotus japonicus HOM05D004965 ORTHO05D004401 7.7e-09 63.9 90 42.2
arahy.Tifrunner.gnm1.ann1.6A0KRF Arachis hypogaea HOM05D004965 ORTHO05D004401 1.3e-08 63.2 103 43.7
arahy.Tifrunner.gnm1.ann1.E1G8VG Arachis hypogaea HOM05D004965 ORTHO05D004401 1.3e-08 63.2 103 43.7
A09p03680 Brassica napus HOM05D009946 ORTHO05D004401 1.3e-08 63.2 93 45.2
C09p03880 Brassica napus HOM05D009946 ORTHO05D004401 1.3e-08 63.2 93 45.2
Lalb_Chr16g0382641 Lupinus albus HOM05D004965 ORTHO05D004401 1.3e-08 63.2 100 41.0
Gohir.D02G167800 Gossypium hirsutum HOM05D004965 ORTHO05D004401 1.7e-08 62.8 91 44.0
PGSC0003DMG400022630 Solanum tuberosum HOM05D004965 ORTHO05D004401 1.7e-08 62.8 103 39.8
Hund13292 Selenicereus undatus HOM05D004965 ORTHO05D004401 2.2e-08 62.4 96 39.6
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 3.8e-08 61.6 94 38.3
FAN07G0801 Fragaria x ananassa HOM05D004965 ORTHO05D004401 5.0e-08 61.2 103 37.9
Glyma.01G038900 Glycine max HOM05D004965 ORTHO05D004401 5.0e-08 61.2 93 43.0
Glyma.02G025700 Glycine max HOM05D004965 ORTHO05D004401 5.0e-08 61.2 89 41.6
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 6.5e-08 60.8 97 41.2
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 6.5e-08 60.8 80 42.5
ATR0665G516 Amborella trichopoda HOM05D004965 ORTHO05D004401 8.5e-08 60.5 42 73.8
Lalb_Chr09g0326631 Lupinus albus HOM05D004965 ORTHO05D004401 1.1e-07 60.1 88 44.3
DCAR_026576 Daucus carota HOM05D004965 ORTHO05D004401 1.5e-07 59.7 99 38.4
Lalb_Chr05g0217401 Lupinus albus HOM05D004965 ORTHO05D004401 1.5e-07 59.7 88 42.0
Lalb_Chr21g0319141 Lupinus albus HOM05D004965 ORTHO05D004401 1.5e-07 59.7 92 41.3
Aa31LG2G4620 Aethionema arabicum HOM05D009946 ORTHO05D004401 1.9e-07 59.3 85 40.0
CANSAT01G1612 Cannabis sativa HOM05D004965 ORTHO05D004401 1.9e-07 59.3 45 64.4
MELO3C026507.2 Cucumis melo HOM05D004965 ORTHO05D004401 1.9e-07 59.3 97 40.2
FAN12G3850 Fragaria x ananassa HOM05D004965 ORTHO05D004401 1.9e-07 59.3 66 47.0
BcaB04g19463 Brassica carinata HOM05D009946 ORTHO05D004401 2.5e-07 58.9 85 45.9
BcaC04g23875 Brassica carinata HOM05D009946 ORTHO05D004401 2.5e-07 58.9 90 44.4
FvH4_4g35400 Fragaria vesca HOM05D004965 ORTHO05D004401 2.5e-07 58.9 103 36.9
Peaxi162Scf00059g00123 Petunia axillaris HOM05D028751 ORTHO05D030265 2.5e-07 58.9 82 40.2
Sp5g25080 Schrenkiella parvula HOM05D010176 ORTHO05D012455 2.5e-07 58.9 97 40.2
Sc10g0004060 Simmondsia chinensis HOM05D004965 ORTHO05D004401 2.5e-07 58.9 107 38.3
C07p37510 Brassica napus HOM05D009946 ORTHO05D004401 3.2e-07 58.5 94 43.6
BolC7t44264H Brassica oleracea HOM05D009946 ORTHO05D004401 3.2e-07 58.5 94 43.6
ECA246G4714 Erigeron canadensis HOM05D004965 ORTHO05D004401 3.2e-07 58.5 90 44.4
Psat2g116360 Pisum sativum HOM05D004965 ORTHO05D004401 3.2e-07 58.5 92 43.5
A06p40520 Brassica napus HOM05D009946 ORTHO05D004401 4.2e-07 58.2 94 43.6
BraA06t26971Z Brassica rapa HOM05D009946 ORTHO05D004401 4.2e-07 58.2 94 43.6
Hund25308 Selenicereus undatus HOM05D004965 ORTHO05D004401 4.2e-07 58.2 99 38.4
ECA232G4812 Erigeron canadensis HOM05D006434 ORTHO05D008069 5.5e-07 57.8 37 73.0
MD13G1083500 Malus domestica HOM05D004965 ORTHO05D004401 5.5e-07 57.8 100 43.0
ClCG08G009090 Citrullus lanatus HOM05D004965 ORTHO05D004401 7.2e-07 57.4 98 37.8
Thhalv10019352m.g Eutrema salsugineum HOM05D010176 ORTHO05D012455 7.2e-07 57.4 97 39.2
Lsat_1_v5_gn_0_35980 Lactuca sativa HOM05D004965 ORTHO05D004401 7.2e-07 57.4 90 45.6
CARHR063070 Cardamine hirsuta HOM05D010176 ORTHO05D012455 9.4e-07 57.0 100 40.0
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 9.4e-07 57.0 64 46.9
arahy.Tifrunner.gnm1.ann1.0GIF91 Arachis hypogaea HOM05D004965 ORTHO05D004401 1.2e-06 56.6 36 72.2
BcaC03g17517 Brassica carinata HOM05D009946 ORTHO05D004401 1.2e-06 56.6 94 43.6
BolC2t11540H Brassica oleracea HOM05D009946 ORTHO05D004401 1.2e-06 56.6 94 43.6
HanXRQChr15g0474251 Helianthus annuus HOM05D004965 ORTHO05D004401 1.2e-06 56.6 91 41.8
A02p16280 Brassica napus HOM05D010176 ORTHO05D012455 2.1e-06 55.8 95 38.9
BcaB03g15521 Brassica carinata HOM05D010176 ORTHO05D012455 2.7e-06 55.5 93 40.9
Eucgr.J02154 Eucalyptus grandis HOM05D004965 ORTHO05D004401 2.7e-06 55.5 91 41.8
SalBow8G5011 Salvia bowleyana HOM05D004965 ORTHO05D004401 2.7e-06 55.5 94 38.3
AT1G69970 Arabidopsis thaliana HOM05D010176 ORTHO05D012455 3.6e-06 55.1 95 40.0
Medtr5g037140 Medicago truncatula HOM05D004965 ORTHO05D004401 3.6e-06 55.1 97 40.2
Nitab4.5_0001239g0080 Nicotiana tabacum HOM05D021089 ORTHO05D022961 3.6e-06 55.1 83 38.6
Sabra10G0027200 Salix brachista HOM05D004965 ORTHO05D004401 3.6e-06 55.1 99 38.4
CsaV3_6G036050 Cucumis sativus L. HOM05D004965 ORTHO05D004401 4.7e-06 54.7 96 37.5
Lsat_1_v5_gn_8_161261 Lactuca sativa HOM05D004965 ORTHO05D004401 4.7e-06 54.7 91 40.7
Nitab4.5_0002265g0020 Nicotiana tabacum HOM05D021089 ORTHO05D022961 4.7e-06 54.7 66 45.5
Carub.0002s1667 Capsella rubella HOM05D010176 ORTHO05D012455 6.1e-06 54.3 106 36.8
Eucgr.B02578 Eucalyptus grandis HOM05D004965 ORTHO05D004401 6.1e-06 54.3 43 62.8
Solyc02g087470.4 Solanum lycopersicum HOM05D021089 ORTHO05D022961 6.1e-06 54.3 70 42.9
Phvul.002G079000 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 8.0e-06 53.9 87 37.9
Sopen02g032220 Solanum pennellii HOM05D021089 ORTHO05D022961 8.0e-06 53.9 144 28.5


User provided reference genes

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