Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 4.9e-271 937.2 468 100.0
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 1.3e-175 620.2 489 66.9
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 2.5e-174 615.9 494 64.8
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 3.3e-174 615.5 495 64.6
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 6.2e-173 611.3 495 64.0
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 8.1e-173 610.9 488 65.6
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 3.1e-172 609.0 495 63.8
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 1.5e-171 606.7 488 65.6
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 2.0e-171 606.3 495 64.2
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 2.2e-170 602.8 456 66.2
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 6.4e-170 601.3 492 64.6
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 2.4e-169 599.4 445 67.6
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 3.2e-169 599.0 455 65.9
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 3.2e-169 599.0 480 64.2
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 5.4e-169 598.2 436 68.1
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 1.6e-168 596.7 487 62.6
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 4.6e-168 595.1 480 64.0
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 1.3e-167 593.6 480 63.5
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 1.1e-166 590.5 453 65.3
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 1.5e-166 590.1 493 61.9
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 3.3e-166 589.0 485 63.3
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 1.6e-165 586.6 437 67.7
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 2.8e-165 585.9 445 66.1
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.8e-165 585.1 453 65.1
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 8.1e-165 584.3 509 61.1
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 1.4e-164 583.6 443 65.5
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 4.0e-164 582.0 453 63.8
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 1.7e-162 576.6 436 64.9
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 1.7e-162 576.6 468 62.0
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 2.9e-162 575.9 497 62.8
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 3.8e-162 575.5 456 65.8
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 4.9e-162 575.1 463 63.3
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 8.4e-162 574.3 495 62.0
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 1.9e-161 573.2 432 66.9
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.9e-161 573.2 513 60.0
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 1.9e-161 573.2 543 57.8
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 4.2e-161 572.0 477 62.1
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 1.2e-160 570.5 527 59.0
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 7.9e-160 567.8 478 61.5
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 1.3e-159 567.0 436 66.5
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 1.8e-159 566.6 463 64.1
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 1.8e-159 566.6 466 60.7
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 2.3e-159 566.2 457 63.5
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 3.0e-159 565.8 464 62.5
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 5.1e-159 565.1 409 69.4
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 7.4e-158 561.2 438 63.9
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 2.1e-157 559.7 444 64.0
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 3.7e-157 558.9 436 65.1
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 3.7e-157 558.9 424 65.8
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 4.8e-157 558.5 432 65.7
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 3.1e-156 555.8 446 63.5
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 4.0e-156 555.4 463 62.6
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.6e-155 552.7 421 65.6
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 3.4e-155 552.4 496 60.3
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 5.8e-155 551.6 562 53.0
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 7.6e-155 551.2 431 64.7
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 1.3e-154 550.4 429 63.4
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 2.2e-154 549.7 457 63.9
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 6.4e-154 548.1 404 67.6
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 1.9e-153 546.6 426 64.1
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 1.9e-153 546.6 444 62.6
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 3.5e-152 542.3 433 64.0
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 1.0e-151 540.8 468 59.8
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 2.3e-151 539.7 448 60.7
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 3.3e-150 535.8 446 62.6
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.4e-150 534.6 487 58.3
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 6.2e-149 531.6 403 65.5
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 7.6e-147 524.6 424 61.8
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.3e-146 523.9 448 62.1
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 1.3e-146 523.9 456 60.5
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 2.9e-146 522.7 431 62.9
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 4.9e-146 521.9 477 58.5
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.4e-146 521.2 519 54.9
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 5.1e-143 511.9 509 55.0
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 3.3e-142 509.2 388 66.2
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 2.8e-141 506.1 435 59.3
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.4e-140 503.8 433 58.4
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 5.3e-140 501.9 505 54.7
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 2.0e-139 500.0 475 54.3
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 1.0e-138 497.7 438 60.7
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 2.9e-138 496.1 440 58.4
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 1.4e-137 493.8 378 65.6
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.6e-136 490.3 487 55.0
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.8e-135 486.9 433 59.8
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 3.0e-135 486.1 443 58.2
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 3.3e-134 482.6 487 55.0
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 1.3e-133 480.7 416 60.6
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 4.1e-132 475.7 366 66.7
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 3.2e-129 466.1 366 66.1
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 5.5e-129 465.3 386 63.5
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 2.2e-122 443.4 418 55.5
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 6.5e-122 441.8 432 50.9
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 4.2e-121 439.1 437 52.4
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 6.1e-112 408.7 334 62.3
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 4.0e-111 406.0 423 49.9
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 2.6e-110 403.3 315 65.7
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 1.0e-106 391.3 485 50.9
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 1.1e-105 387.9 339 60.8
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 2.6e-102 376.7 469 43.3
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 2.2e-93 347.1 270 65.2
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 9.2e-92 341.7 424 44.3
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 1.4e-84 317.8 277 61.7
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 6.0e-75 285.8 242 62.0
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 2.2e-69 267.3 197 67.5
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 8.6e-66 255.4 261 50.2
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 7.3e-65 252.3 286 51.7
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 1.5e-62 244.6 191 63.4
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 4.6e-59 233.0 195 61.5
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 5.1e-58 229.6 177 66.7
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 2.9e-45 187.2 112 77.7
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 4.8e-40 169.9 96 77.1
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 6.9e-39 166.0 261 40.2
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 1.0e-37 162.2 121 60.3
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 4.9e-37 159.8 165 48.5
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 6.0e-35 152.9 294 38.1
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 5.1e-34 149.8 134 58.2
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 4.1e-31 140.2 132 54.5
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 5.3e-31 139.8 210 41.4
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 5.9e-30 136.3 87 66.7
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 5.5e-20 103.2 234 32.5
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 3.3e-17 94.0 94 52.1
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 3.7e-16 90.5 115 44.3
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 8.2e-16 89.4 115 44.3
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 9.1e-15 85.9 474 24.9
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.0e-13 82.4 47 72.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 2.7e-11 74.3 81 48.1
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 2.7e-11 74.3 81 48.1
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 3.6e-11 73.9 61 52.5
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 5.1e-10 70.1 57 52.6
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.7e-10 69.7 39 82.1
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.7e-10 69.7 39 82.1
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 9.7e-09 65.9 48 60.4
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 3.7e-08 63.9 36 80.6
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 4.8e-08 63.5 36 77.8


User provided reference genes

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