Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 0.0e+00 1221.1 631 100.0
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 6.8e-82 309.3 768 35.9
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 2.4e-79 300.8 761 35.3
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 3.3e-76 290.4 770 34.0
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 3.5e-70 270.4 528 40.9
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 3.3e-68 263.8 782 32.9
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 1.2e-65 255.4 771 34.1
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 1.4e-63 248.4 736 32.2
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 2.7e-62 244.2 721 33.7
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.3e-61 241.9 784 31.8
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.0e-61 240.7 743 31.9
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 3.0e-61 240.7 782 32.4
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 1.1e-60 238.8 772 31.3
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 2.5e-60 237.7 727 33.6
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 7.3e-60 236.1 785 31.6
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.6e-59 235.0 742 32.6
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 1.1e-58 232.3 762 31.0
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.8e-58 231.5 801 31.5
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 6.8e-58 229.6 681 35.1
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 4.4e-57 226.9 769 31.3
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 5.8e-57 226.5 762 31.1
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 9.9e-57 225.7 775 31.1
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 4.9e-56 223.4 777 32.0
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 5.4e-55 219.9 802 30.5
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 1.9e-52 211.5 759 30.6
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 4.0e-50 203.8 737 29.6
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 7.6e-49 199.5 712 29.1
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.7e-48 198.4 774 28.4
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 3.2e-47 194.1 655 31.6
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 4.2e-47 193.7 754 30.5
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 1.6e-46 191.8 615 31.7
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 2.3e-45 188.0 717 30.4
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 7.3e-44 183.0 807 29.5
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.6e-43 181.8 576 30.9
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 2.1e-43 181.4 742 29.2
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 2.4e-42 177.9 644 30.7
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.0e-42 177.2 773 28.1
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.0e-42 177.2 696 28.6
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 6.9e-42 176.4 763 29.1
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 1.2e-41 175.6 695 30.4
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.3e-40 172.2 639 31.1
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 2.9e-40 171.0 765 27.8
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 6.4e-40 169.9 764 27.5
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 2.1e-38 164.9 354 39.8
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 1.0e-37 162.5 674 28.8
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.8e-37 161.8 745 28.9
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 6.7e-37 159.8 468 33.1
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 1.5e-36 158.7 837 27.5
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 4.8e-35 153.7 694 27.7
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.8e-34 151.8 765 27.5
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.4e-34 151.4 737 28.0
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 2.4e-34 151.4 749 28.0
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 5.8e-33 146.7 769 26.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 1.3e-32 145.6 776 26.5
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 2.9e-32 144.4 623 29.7
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.9e-32 144.4 678 27.1
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 8.4e-32 142.9 721 28.4
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.4e-31 142.1 769 26.7
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 2.5e-31 141.4 744 27.2
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 3.2e-31 141.0 754 27.9
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 9.3e-31 139.4 639 27.9
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 7.9e-30 136.3 446 32.3
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 1.3e-29 135.6 734 25.2
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 5.1e-29 133.7 668 27.7
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 8.7e-29 132.9 731 27.2
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 1.9e-28 131.7 461 30.8
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 3.3e-28 131.0 593 28.2
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 7.4e-28 129.8 539 29.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 3.7e-27 127.5 422 31.0
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 8.2e-27 126.3 456 29.6
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 2.4e-26 124.8 328 36.3
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 1.5e-25 122.1 794 25.4
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 1.0e-24 119.4 632 26.6
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-24 118.6 500 28.2
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.7e-24 118.6 790 26.3
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 2.9e-24 117.9 427 31.6
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 8.4e-24 116.3 146 51.4
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 8.4e-24 116.3 500 29.4
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 1.2e-22 112.5 597 26.6
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 4.6e-22 110.5 754 28.5
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 6.1e-22 110.2 352 34.4
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 6.7e-21 106.7 507 29.0
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 7.4e-20 103.2 515 28.3
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.3e-19 102.4 299 35.5
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 1.3e-19 102.4 691 25.5
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 2.8e-19 101.3 299 32.1
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 4.8e-19 100.5 465 29.7
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 1.1e-18 99.4 458 27.7
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 1.1e-18 99.4 357 30.3
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.4e-18 99.0 692 24.1
Atru.chr5.3066 Acer truncatum HOM05D003739 ORTHO05D003996 1.8e-18 98.6 322 29.2
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 2.6e-17 94.7 771 24.3
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 3.4e-17 94.4 144 41.0
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 3.4e-17 94.4 144 41.0
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 3.4e-17 94.4 83 55.4
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 7.7e-17 93.2 366 30.3
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 6.5e-16 90.1 152 42.1
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.6e-14 85.5 92 53.3
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 2.1e-14 85.1 323 28.5
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.1e-14 85.1 138 42.0
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 2.7e-14 84.7 435 26.4
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 2.7e-14 84.7 380 26.1
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 4.6e-14 84.0 271 29.2
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 4.6e-14 84.0 271 29.2
Sc19g0000570 Simmondsia chinensis HOM05D003739 ORTHO05D003996 1.4e-13 82.4 545 24.8
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 1.8e-13 82.0 468 26.7
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 2.3e-13 81.6 701 25.4
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 2.3e-13 81.6 743 24.8
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 3.0e-13 81.3 494 26.5
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 5.1e-13 80.5 526 25.9
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 2.5e-12 78.2 722 23.4
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 9.7e-12 76.3 243 29.6
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-11 75.1 490 25.3
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 2.2e-11 75.1 685 25.3
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.2e-11 75.1 673 24.7
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 2.8e-11 74.7 405 26.9
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 4.8e-11 73.9 529 25.9
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 6.3e-11 73.6 534 27.7
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 1.1e-10 72.8 698 24.6
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 1.8e-10 72.0 343 24.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 1.8e-10 72.0 635 23.5
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 3.1e-10 71.2 523 24.5
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 3.1e-10 71.2 89 44.9
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 3.1e-10 71.2 139 33.8
Solyc02g081640.4 Solanum lycopersicum HOM05D003739 ORTHO05D003996 5.3e-10 70.5 421 26.6
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 6.9e-10 70.1 449 25.6
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 6.9e-10 70.1 95 49.5
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 9.1e-10 69.7 111 40.5
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.2e-09 69.3 146 37.7
Thecc.07G171200 Theobroma cacao HOM05D003739 ORTHO05D003996 4.5e-09 67.4 155 40.6
Thecc.07G171300 Theobroma cacao HOM05D003739 ORTHO05D045175 4.5e-09 67.4 130 33.1
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 5.9e-09 67.0 49 71.4
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 1.0e-08 66.2 47 63.8
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 1.3e-08 65.9 450 25.3
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 3.8e-08 64.3 139 31.7
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 8.5e-08 63.2 90 41.1
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.5e-07 61.6 464 22.8
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 2.5e-07 61.6 143 31.5
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 3.2e-07 61.2 455 25.3
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.2e-07 60.1 84 39.3
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.2e-07 60.1 84 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 7.2e-07 60.1 129 31.8
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 9.4e-07 59.7 133 36.8
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 3.6e-06 57.8 53 50.9
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 3.6e-06 57.8 557 21.0


User provided reference genes

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