Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc14.108 Carica papaya HOM05D004918 ORTHO05D005706 1.0e-128 463.4 224 100.0
Ciclev10026430m.g Citrus clementina HOM05D004918 ORTHO05D005706 4.3e-87 325.1 224 65.6
Gorai.009G122300 Gossypium raimondii HOM05D004918 ORTHO05D005706 1.5e-84 316.6 225 64.9
Manes.11G069000 Manihot esculenta HOM05D004918 ORTHO05D005706 3.4e-84 315.5 223 65.5
CSS0025832 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 7.5e-84 314.3 208 67.8
Atru.chr1.2801 Acer truncatum HOM05D004918 ORTHO05D005706 1.7e-83 313.2 223 65.9
Thecc.06G046100 Theobroma cacao HOM05D004918 ORTHO05D005706 1.7e-83 313.2 219 66.2
Gohir.A05G117500 Gossypium hirsutum HOM05D004918 ORTHO05D005706 2.2e-83 312.8 225 64.9
Duzib192G0308 Durio zibethinus HOM05D004918 ORTHO05D005706 4.9e-83 311.6 217 65.9
Potri.003G184701 Populus trichocarpa HOM05D004918 ORTHO05D005706 1.1e-82 310.5 223 66.4
Actinidia25464 Actinidia chinensis HOM05D004918 ORTHO05D005706 3.2e-82 308.9 219 66.2
Dinv23270 Davidia involucrata HOM05D004918 ORTHO05D005706 4.1e-82 308.5 218 65.6
Sabra03G0135200 Salix brachista HOM05D004918 ORTHO05D005706 2.7e-81 305.8 213 67.1
TAR625G0238 Trochodendron aralioides HOM05D004918 ORTHO05D005706 3.5e-81 305.4 223 63.2
Oeu004556.1 Olea europaea HOM05D004918 ORTHO05D005706 1.2e-78 297.0 212 64.2
Atru.chr8.1159 Acer truncatum HOM05D004918 ORTHO05D005706 2.8e-78 295.8 213 66.2
Prupe.3G103300 Prunus persica HOM05D004918 ORTHO05D005706 6.2e-78 294.7 212 64.6
TWI12G0375 Tripterygium wilfordii HOM05D004918 ORTHO05D005706 6.2e-78 294.7 212 62.3
Lj6g0018730 Lotus japonicus HOM05D004918 ORTHO05D005706 5.2e-77 291.6 225 61.3
Cfa001859 Carpinus fangiana HOM05D004918 ORTHO05D005706 1.5e-76 290.0 217 61.8
MD12G1013200 Malus domestica HOM05D004918 ORTHO05D005706 2.0e-76 289.7 212 63.2
Hma1.2p1_1914F.1_g307380 Hydrangea macrophylla HOM05D004918 ORTHO05D005706 2.6e-76 289.3 203 65.5
DCAR_025541 Daucus carota HOM05D004918 ORTHO05D005706 3.4e-76 288.9 214 60.3
RcHm_v2.0_Chr2g0132361 Rosa chinensis HOM05D004918 ORTHO05D005706 3.4e-76 288.9 202 63.9
VMungo1309G0542 Vigna mungo HOM05D004918 ORTHO05D005706 5.8e-76 288.1 225 62.2
AL1G28210 Arabidopsis lyrata HOM05D004918 ORTHO05D005706 1.3e-75 287.0 226 58.8
MD14G1138800 Malus domestica HOM05D004918 ORTHO05D005706 1.7e-75 286.6 214 63.1
GSVIVG01016107001 Vitis vinifera HOM05D004918 ORTHO05D005706 1.7e-75 286.6 205 63.4
Migut.I00673 Erythranthe guttata HOM05D004918 ORTHO05D005706 2.2e-75 286.2 211 61.6
Peaxi162Scf00314g01045 Petunia axillaris HOM05D004918 ORTHO05D005706 3.7e-75 285.4 212 59.9
THA.LOC104812419 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 4.9e-75 285.0 213 60.1
THA.LOC104808174 Tarenaya hassleriana HOM05D004918 ORTHO05D005706 6.4e-75 284.6 223 60.1
Medtr3g110270 Medicago truncatula HOM05D004918 ORTHO05D005706 8.3e-75 284.3 212 62.3
CARHR016550 Cardamine hirsuta HOM05D004918 ORTHO05D005706 1.4e-74 283.5 211 62.1
Aa31LG7G620 Aethionema arabicum HOM05D004918 ORTHO05D005706 2.4e-74 282.7 217 61.3
Sc05g0005820 Simmondsia chinensis HOM05D004918 ORTHO05D005706 3.2e-74 282.3 207 61.4
Glyma.09G000800 Glycine max HOM05D004918 ORTHO05D005706 4.1e-74 282.0 212 60.8
TPR.G15094 Trifolium pratense HOM05D004918 ORTHO05D005706 9.2e-74 280.8 213 62.9
Carub.0001s1585 Capsella rubella HOM05D004918 ORTHO05D005706 2.7e-73 279.3 210 61.0
SGA_v2.0_scaffold419G51286 Striga asiatica HOM05D004918 ORTHO05D005706 3.5e-73 278.9 204 61.3
Phvul.009G194500 Phaseolus vulgaris HOM05D004918 ORTHO05D005706 7.8e-73 277.7 223 58.7
A06p12070 Brassica napus HOM05D004918 ORTHO05D005706 1.3e-72 276.9 221 59.7
CiPaw.01G073400 Carya illinoinensis HOM05D004918 ORTHO05D005706 1.7e-72 276.6 215 61.4
C08p44630 Brassica napus HOM05D000031 ORTHO05D007294 3.0e-72 275.8 222 56.8
Nn2g12451 Nelumbo nucifera HOM05D004918 ORTHO05D005706 3.0e-72 275.8 220 56.8
A08p31410 Brassica napus HOM05D004918 ORTHO05D005706 3.9e-72 275.4 219 57.5
BraA08t35064Z Brassica rapa HOM05D004918 ORTHO05D005706 3.9e-72 275.4 219 57.5
MSTRG.22808 Avicennia marina HOM05D004918 ORTHO05D005706 6.6e-72 274.6 211 59.2
Nn2g14031 Nelumbo nucifera HOM05D004918 ORTHO05D005706 6.6e-72 274.6 222 55.9
QL10p031453 Quercus lobata HOM05D004918 ORTHO05D005706 6.6e-72 274.6 190 64.7
FAN09G4697 Fragaria x ananassa HOM05D004918 ORTHO05D005706 8.6e-72 274.2 214 58.9
Lalb_Chr13g0301111 Lupinus albus HOM05D004918 ORTHO05D005706 8.6e-72 274.2 229 58.1
CsaV3_3G032650 Cucumis sativus L. HOM05D004918 ORTHO05D005706 1.1e-71 273.9 215 59.1
ECA232G4560 Erigeron canadensis HOM05D004918 ORTHO05D005706 1.1e-71 273.9 212 59.0
C05p14240 Brassica napus HOM05D004918 ORTHO05D005706 1.5e-71 273.5 220 59.1
PGR102G0155 Punica granatum HOM05D004918 ORTHO05D005706 1.5e-71 273.5 211 60.7
Thhalv10008658m.g Eutrema salsugineum HOM05D004918 ORTHO05D005706 2.5e-71 272.7 217 57.6
BcaB03g14507 Brassica carinata HOM05D004918 ORTHO05D005706 3.3e-71 272.3 200 61.0
BraA06t24376Z Brassica rapa HOM05D004918 ORTHO05D005706 3.3e-71 272.3 222 59.0
ClCG10G012810 Citrullus lanatus HOM05D004918 ORTHO05D005706 3.3e-71 272.3 195 63.1
Sp1g14360 Schrenkiella parvula HOM05D004918 ORTHO05D005706 3.3e-71 272.3 211 61.6
BcaC05g25623 Brassica carinata HOM05D004918 ORTHO05D005706 4.3e-71 271.9 220 58.6
Cc04_g05650 Coffea canephora HOM05D004918 ORTHO05D005706 4.3e-71 271.9 225 56.4
BcaB02g06654 Brassica carinata HOM05D004918 ORTHO05D005706 1.2e-70 270.4 212 59.9
Cc04_g05280 Coffea canephora HOM05D004918 ORTHO05D005706 1.2e-70 270.4 225 56.9
Psat5g020280 Pisum sativum HOM05D004918 ORTHO05D005706 1.6e-70 270.0 205 61.0
BcaC07g38802 Brassica carinata HOM05D004918 ORTHO05D005706 2.8e-70 269.2 210 58.6
A09p61040 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-70 269.2 200 60.5
C08p17380 Brassica napus HOM05D004918 ORTHO05D005706 2.8e-70 269.2 210 58.6
BolC8t49364H Brassica oleracea HOM05D004918 ORTHO05D005706 2.8e-70 269.2 210 58.6
Nitab4.5_0002700g0180 Nicotiana tabacum HOM05D004918 ORTHO05D005706 3.6e-70 268.9 213 57.7
Ah.01g002790 Amaranthus hybridus HOM05D004918 ORTHO05D005706 6.2e-70 268.1 203 57.6
Nitab4.5_0004738g0120 Nicotiana tabacum HOM05D004918 ORTHO05D005706 6.2e-70 268.1 219 56.6
CiPaw.02G163500 Carya illinoinensis HOM05D004918 ORTHO05D005706 8.1e-70 267.7 213 58.7
BolC5t30156H Brassica oleracea HOM05D004918 ORTHO05D005706 1.8e-69 266.5 221 58.4
arahy.Tifrunner.gnm1.ann1.T9YNFF Arachis hypogaea HOM05D004918 ORTHO05D005706 2.3e-69 266.2 209 59.3
BraA09t41477Z Brassica rapa HOM05D004918 ORTHO05D005706 2.3e-69 266.2 196 61.7
Eucgr.F03982 Eucalyptus grandis HOM05D004918 ORTHO05D005706 3.1e-69 265.8 231 55.8
HanXRQChr17g0561891 Helianthus annuus HOM05D004918 ORTHO05D005706 8.9e-69 264.2 227 56.4
Rhsim08G0203200 Rhododendron simsii HOM05D004918 ORTHO05D005706 2.6e-68 262.7 182 68.1
Sopen03g036560 Solanum pennellii HOM05D004918 ORTHO05D005706 5.8e-68 261.5 213 57.3
PGSC0003DMG400014153 Solanum tuberosum HOM05D004918 ORTHO05D005706 7.5e-68 261.2 213 57.3
AT1G16040 Arabidopsis thaliana HOM05D004918 ORTHO05D005706 9.8e-68 260.8 199 60.8
SalBow8G2778 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.3e-67 260.4 232 52.6
PSO724G0600 Papaver somniferum HOM05D004918 ORTHO05D005706 1.7e-67 260.0 214 56.1
PSO729G0217 Papaver somniferum HOM05D004918 ORTHO05D005706 1.7e-67 260.0 214 56.1
CANSAT35G0550 Cannabis sativa HOM05D004918 ORTHO05D005706 2.2e-67 259.6 213 54.5
PSO017G2949 Papaver somniferum HOM05D004918 ORTHO05D005706 4.9e-67 258.5 214 56.1
CDE02G0643 Ceratophyllum demersum HOM05D004918 ORTHO05D005706 6.4e-67 258.1 212 56.1
COL.COLO4_24896 Corchorus olitorius HOM05D004918 ORTHO05D005706 1.9e-66 256.5 209 56.5
Sed0025979 Sechium edule HOM05D004918 ORTHO05D005706 2.4e-66 256.1 233 52.8
FAN02G2144 Fragaria x ananassa HOM05D004918 ORTHO05D005706 4.1e-66 255.4 225 54.7
HanXRQChr10g0298641 Helianthus annuus HOM05D004918 ORTHO05D005706 4.1e-66 255.4 209 57.9
PSO063G6564 Papaver somniferum HOM05D004918 ORTHO05D005706 5.4e-66 255.0 214 53.7
MBI19_g12142_MAGBIO Magnolia biondii HOM05D004918 ORTHO05D005706 9.2e-66 254.2 213 55.9
PGSC0003DMG402014462 Solanum tuberosum HOM05D004918 ORTHO05D005706 1.6e-65 253.4 203 55.7
HPP92_001544 Vanilla planifolia HOM05D004918 ORTHO05D005706 2.7e-65 252.7 219 53.4
BcaB03g13048 Brassica carinata HOM05D004918 ORTHO05D005706 1.1e-63 247.3 229 53.3
BolC8t52009H Brassica oleracea HOM05D000031 ORTHO05D007294 1.9e-63 246.5 247 49.0
Lsat_1_v5_gn_4_85101 Lactuca sativa HOM05D004918 ORTHO05D005706 3.3e-63 245.7 174 63.2
HanXRQChr16g0499441 Helianthus annuus HOM05D004918 ORTHO05D005706 4.3e-63 245.4 224 54.0
Oeu035883.1 Olea europaea HOM05D004918 ORTHO05D005706 3.6e-62 242.3 174 64.9
Glyma.09G000900 Glycine max HOM05D004918 ORTHO05D005706 8.1e-62 241.1 179 62.0
vmacro19072 Vaccinium macrocarpon HOM05D004918 ORTHO05D005706 4.0e-61 238.8 206 56.8
MELO3C028676.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.8e-61 238.0 215 54.9
FAN09G3573 Fragaria x ananassa HOM05D004918 ORTHO05D005706 5.8e-60 235.0 224 53.6
Sopen12g021620 Solanum pennellii HOM05D004918 ORTHO05D005706 1.3e-59 233.8 207 51.2
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.7e-59 233.4 187 57.2
arahy.Tifrunner.gnm1.ann1.ZUNL57 Arachis hypogaea HOM05D004918 ORTHO05D005706 4.9e-59 231.9 214 53.3
Solyc03g117650.4 Solanum lycopersicum HOM05D004918 ORTHO05D005706 3.2e-58 229.2 213 52.6
SEGI_14369 Sequoiadendron giganteum HOM05D004918 ORTHO05D005706 4.1e-58 228.8 217 47.0
Solyc12g042530.2 Solanum lycopersicum HOM05D004918 ORTHO05D005706 4.6e-57 225.3 207 49.8
Haze_16687 Corylus avellana HOM05D004918 ORTHO05D005706 1.1e-55 220.7 181 58.0
Zm00001eb403520 Zea mays HOM05D004918 ORTHO05D005706 1.5e-55 220.3 216 50.9
ATR0568G024 Amborella trichopoda HOM05D004918 ORTHO05D005706 9.6e-55 217.6 176 55.1
Os03g0129000 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 6.2e-54 214.9 236 47.9
SHI05687 Sapria himalayana HOM05D004918 ORTHO05D005706 3.1e-53 212.6 188 50.5
CAN.G276.2 Capsicum annuum HOM05D004918 ORTHO05D005706 3.8e-51 205.7 164 58.5
FAN14G3036 Fragaria x ananassa HOM05D004918 ORTHO05D005706 6.0e-49 198.4 243 45.7
unitig_62.g23577 Utricularia gibba HOM05D004918 ORTHO05D005706 1.3e-48 197.2 246 43.5
Pp3c8_15970 Physcomitrium patens HOM05D004918 ORTHO05D005706 3.6e-46 189.1 209 44.0
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 8.1e-46 188.0 203 45.3
Aqoxy4G02614 Aquilegia oxysepala HOM05D004918 ORTHO05D005706 4.0e-45 185.7 132 64.4
arahy.Tifrunner.gnm1.ann1.BN6NH6 Arachis hypogaea HOM05D004918 ORTHO05D005706 5.8e-44 181.8 209 45.9
Ca_15577_v3 Cicer arietinum L. HOM05D004918 ORTHO05D005706 2.2e-43 179.9 108 74.1
arahy.Tifrunner.gnm1.ann1.U5XJV3 Arachis hypogaea HOM05D004918 ORTHO05D005706 2.9e-43 179.5 210 45.2
FvH4_6g28300 Fragaria vesca HOM05D004918 ORTHO05D005706 1.2e-41 174.1 131 64.1
CAN.G1008.5 Capsicum annuum HOM05D000348 ORTHO05D005706 7.9e-41 171.4 175 49.7
Mapoly0005s0096 Marchantia polymorpha HOM05D004918 ORTHO05D005706 1.3e-40 170.6 193 38.9
Gohir.D05G118400 Gossypium hirsutum HOM05D004918 ORTHO05D005706 4.9e-35 152.1 118 60.2
CBR_g41678 Chara braunii HOM05D004918 ORTHO05D005706 1.9e-34 150.2 134 45.5
SMO351G0301 Selaginella moellendorffii HOM05D004918 ORTHO05D005706 1.3e-27 127.5 178 39.3
AagrBONN_evm.TU.Sc2ySwM_344.4108 Anthoceros agrestis HOM05D004918 ORTHO05D005706 1.5e-23 114.0 94 51.1
Os10g0200800 Oryza sativa ssp. japonica HOM05D004918 ORTHO05D005706 4.8e-22 109.0 71 62.0
CSS0035645 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 3.8e-19 99.4 87 56.3
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 1.4e-18 97.4 79 54.4
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 1.6e-17 94.0 59 67.8
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 3.9e-16 89.4 56 66.1
CAN.G829.5 Capsicum annuum HOM05D004534 ORTHO05D005706 3.9e-16 89.4 73 52.1
Zm00001eb002240 Zea mays HOM05D004918 ORTHO05D005706 1.5e-15 87.4 126 43.7
MELO3C000966.2 Cucumis melo HOM05D004918 ORTHO05D005706 3.7e-14 82.8 90 48.9
CSS0004145 Camellia sinensis var. sinensis HOM05D004918 ORTHO05D005706 6.3e-14 82.0 79 53.2
BcaC05g25622 Brassica carinata HOM05D004918 ORTHO05D005706 2.4e-13 80.1 44 70.5
Sed0005872 Sechium edule HOM05D004918 ORTHO05D005706 5.3e-13 79.0 92 45.7
BcaC03g14995 Brassica carinata HOM05D004918 ORTHO05D005706 7.7e-12 75.1 64 48.4
Actinidia08937 Actinidia chinensis HOM05D004918 ORTHO05D005706 8.5e-11 71.6 49 63.3
AUR62034078 Chenopodium quinoa HOM05D004918 ORTHO05D005706 5.5e-10 68.9 51 58.8
CAN.G1235.23 Capsicum annuum HOM05D004918 ORTHO05D005706 1.6e-09 67.4 35 71.4
Cfa026120 Carpinus fangiana HOM05D004918 ORTHO05D125238 7.9e-09 65.1 116 34.5
AUR62012861 Chenopodium quinoa HOM05D004918 ORTHO05D005706 3.9e-08 62.8 49 57.1
MCO15G581 Micromonas commoda HOM05D004918 ORTHO05D005706 3.9e-08 62.8 201 28.4
MELO3C032630.2 Cucumis melo HOM05D004918 ORTHO05D005706 6.7e-08 62.0 75 45.3
MBI02_g02973_MAGBIO Magnolia biondii HOM05D000955 ORTHO05D003340 3.3e-07 59.7 51 49.0


User provided reference genes

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