Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 0.0e+00 1167.9 596 100.0
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 1.7e-260 902.5 598 76.8
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 8.5e-260 900.2 599 76.8
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 4.2e-259 897.9 600 75.5
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.1e-258 895.6 602 76.6
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 7.5e-256 887.1 601 75.5
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 1.4e-254 882.9 601 74.5
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 9.1e-254 880.2 598 74.9
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 2.7e-253 878.6 600 73.7
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 7.7e-253 877.1 642 71.0
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 1.5e-248 862.8 595 75.5
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.3e-244 849.7 601 72.9
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.7e-244 849.4 601 71.9
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 4.0e-241 838.2 602 70.9
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 3.4e-240 835.1 600 74.0
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 5.7e-240 834.3 602 71.6
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 2.8e-239 832.0 602 71.1
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 4.9e-239 831.2 602 71.3
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 2.3e-236 822.4 598 71.1
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.3e-235 818.5 598 69.2
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 5.6e-235 817.8 602 70.8
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 7.3e-235 817.4 608 69.7
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 1.8e-233 812.8 602 69.1
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 1.2e-232 810.1 600 69.5
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 9.8e-232 807.0 598 71.1
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 1.7e-231 806.2 601 67.9
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 6.4e-231 804.3 600 69.3
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 9.2e-230 800.4 601 69.1
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 2.7e-229 798.9 600 69.0
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 3.5e-229 798.5 604 68.0
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 1.0e-228 797.0 597 69.5
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 3.9e-228 795.0 594 70.0
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 2.8e-226 788.9 599 68.1
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 4.7e-226 788.1 627 66.3
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 1.1e-225 786.9 597 67.7
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 1.1e-225 786.9 600 67.2
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 1.8e-225 786.2 597 67.7
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 3.1e-225 785.4 621 66.7
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 6.8e-225 784.3 601 67.2
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 6.8e-225 784.3 600 67.0
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 2.6e-224 782.3 487 80.5
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 1.3e-223 780.0 600 66.8
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 4.9e-223 778.1 601 67.4
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 4.1e-222 775.0 606 67.0
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 5.4e-222 774.6 597 67.2
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 7.0e-222 774.2 597 67.0
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 1.2e-221 773.5 607 67.5
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 2.1e-221 772.7 638 63.3
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 4.6e-221 771.5 594 68.5
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 4.6e-221 771.5 600 66.7
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.7e-220 769.6 598 66.7
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 1.7e-220 769.6 597 66.5
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 5.1e-220 768.1 596 65.9
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 1.1e-219 766.9 601 66.6
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 1.1e-219 766.9 605 67.8
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 3.3e-219 765.4 597 66.3
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 2.1e-218 762.7 605 67.6
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 4.7e-218 761.5 594 68.2
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 4.7e-218 761.5 604 65.6
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 4.0e-217 758.4 603 66.7
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 5.2e-217 758.1 594 67.5
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 5.2e-217 758.1 602 66.1
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 1.2e-216 756.9 599 66.1
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 5.8e-216 754.6 602 65.9
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 9.9e-216 753.8 613 64.4
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 3.7e-215 751.9 602 64.5
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 1.1e-214 750.4 592 65.4
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 2.4e-214 749.2 602 65.1
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 1.7e-212 743.0 598 65.1
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 5.1e-212 741.5 597 65.2
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 6.6e-212 741.1 596 65.9
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 7.3e-211 737.6 625 62.6
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.7e-207 726.5 606 64.4
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 4.9e-207 724.9 603 63.2
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 1.1e-206 723.8 601 64.7
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 3.2e-206 722.2 500 74.6
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 2.7e-205 719.2 576 64.9
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 3.0e-204 715.7 597 64.0
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 6.6e-204 714.5 593 62.9
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 9.9e-200 700.7 553 66.0
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 2.5e-195 686.0 598 60.4
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 3.3e-195 685.6 610 61.0
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 9.9e-192 674.1 593 61.2
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 4.9e-191 671.8 599 60.6
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 1.2e-189 667.2 604 59.9
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 3.5e-189 665.6 553 63.7
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 1.7e-183 646.7 596 58.7
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 5.5e-182 641.7 603 57.2
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 1.4e-177 627.1 501 66.5
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 2.0e-176 623.2 607 54.7
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 5.5e-174 615.1 634 54.7
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 1.6e-173 613.6 604 56.0
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 6.1e-165 585.1 566 56.4
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 6.5e-159 565.1 607 54.0
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 7.0e-137 491.9 516 53.7
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 2.7e-136 490.0 632 47.8
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 7.2e-134 481.9 486 53.3
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.1e-129 466.5 301 73.4
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 1.8e-124 450.7 356 61.8
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 7.8e-120 435.3 634 43.8
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 1.9e-118 430.6 281 75.1
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 1.3e-71 275.0 218 65.6
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.1e-44 184.1 226 52.2
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.1e-39 166.8 103 78.6
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.4e-38 162.9 105 75.2
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.7e-37 161.8 105 74.3
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 1.7e-37 161.8 424 32.8
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.2e-35 155.6 101 74.3
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.1e-28 132.5 103 64.1
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.6e-27 128.6 86 72.1
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 5.0e-18 97.1 68 66.2
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 2.5e-17 94.7 328 25.9
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 4.7e-16 90.5 182 35.2
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 7.5e-14 83.2 51 74.5
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.3e-13 82.4 47 78.7
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 3.8e-10 70.9 128 45.3


User provided reference genes

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