Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.3e-241 839.3 432 100.0
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 2.9e-132 476.1 402 62.7
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 8.4e-132 474.6 409 61.4
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 6.0e-130 468.4 392 61.5
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.0e-129 467.6 418 59.8
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 1.0e-129 467.6 380 65.0
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 8.7e-129 464.5 376 63.6
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.1e-128 464.2 388 63.1
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 5.6e-128 461.8 411 58.6
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 7.3e-128 461.5 387 62.5
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 9.6e-128 461.1 405 60.5
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 3.6e-127 459.1 405 60.2
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 8.1e-127 458.0 412 60.7
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 1.1e-126 457.6 384 63.3
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.4e-126 457.2 423 59.1
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 5.3e-126 455.3 416 60.6
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 2.9e-124 449.5 415 59.3
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 3.2e-123 446.0 407 58.5
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 2.1e-122 443.4 389 60.7
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 4.6e-122 442.2 419 59.7
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 3.0e-121 439.5 389 57.6
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 3.9e-121 439.1 398 59.3
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 2.5e-120 436.4 398 58.8
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 7.3e-120 434.9 433 55.7
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 9.6e-120 434.5 398 58.8
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 4.8e-119 432.2 387 59.4
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 8.1e-119 431.4 399 57.4
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 9.0e-118 427.9 420 53.8
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 3.4e-117 426.0 404 55.4
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 2.2e-116 423.3 430 54.7
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 2.4e-115 419.9 430 53.5
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 2.4e-115 419.9 402 56.2
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 2.7e-114 416.4 416 54.3
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 3.5e-114 416.0 390 56.2
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 6.0e-114 415.2 392 55.9
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.0e-113 414.5 411 55.2
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.0e-113 414.5 395 55.2
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 1.0e-113 414.5 388 55.4
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 3.0e-113 412.9 427 54.3
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 5.1e-113 412.1 424 53.3
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 5.1e-113 412.1 422 54.0
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 1.1e-112 411.0 424 52.6
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 4.3e-112 409.1 424 51.4
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 7.4e-112 408.3 390 55.4
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 1.6e-111 407.1 420 53.3
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 1.6e-111 407.1 434 52.5
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 2.8e-111 406.4 395 55.7
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 3.7e-111 406.0 390 55.1
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 1.4e-110 404.1 420 53.8
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 1.4e-110 404.1 389 53.5
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.4e-110 404.1 337 60.5
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 4.5e-109 399.1 400 53.0
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 5.8e-109 398.7 400 53.2
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.9e-108 396.4 389 53.2
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 1.9e-107 393.7 394 52.5
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.9e-107 393.7 390 53.3
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 1.9e-107 393.7 355 60.0
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 4.2e-107 392.5 389 53.7
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-106 390.6 412 50.5
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 4.6e-106 389.0 426 52.8
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 7.9e-106 388.3 337 57.0
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 5.1e-105 385.6 388 55.7
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 5.1e-105 385.6 410 49.5
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.1e-104 384.4 356 56.7
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.5e-104 383.3 420 51.0
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 3.3e-104 382.9 407 49.4
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 3.3e-104 382.9 379 55.9
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 9.6e-104 381.3 400 53.0
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.3e-103 380.9 406 49.8
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 6.2e-103 378.6 293 61.8
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.4e-102 376.7 369 54.2
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 1.2e-101 374.4 397 53.9
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.3e-100 370.9 427 47.5
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.3e-100 370.9 459 47.1
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.7e-100 370.5 381 53.3
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 1.7e-100 370.5 376 53.7
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 2.9e-100 369.8 367 54.0
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.0e-100 369.0 321 62.0
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 5.0e-100 369.0 274 64.6
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 1.9e-99 367.1 446 46.9
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 5.5e-99 365.5 383 53.8
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 3.3e-96 356.3 390 50.8
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 6.3e-95 352.1 404 46.3
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 1.1e-94 351.3 378 51.6
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 5.3e-94 349.0 347 55.9
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 6.9e-94 348.6 424 47.2
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 5.9e-93 345.5 411 47.9
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 3.2e-91 339.7 377 52.8
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 9.4e-91 338.2 303 61.4
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.6e-90 335.9 377 46.7
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 2.0e-88 330.5 379 50.1
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 3.3e-88 329.7 388 49.5
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 4.3e-88 329.3 268 58.6
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 5.7e-88 328.9 416 43.8
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 1.7e-87 327.4 399 48.4
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.1e-86 324.7 381 45.9
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 3.1e-86 323.2 397 44.8
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 4.1e-86 322.8 413 45.3
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 1.2e-85 321.2 252 62.3
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 2.0e-85 320.5 393 48.1
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 5.9e-85 318.9 378 47.1
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 2.2e-84 317.0 311 48.9
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 5.5e-83 312.4 399 43.6
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 3.9e-81 306.2 368 47.3
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 2.6e-80 303.5 423 41.1
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 9.7e-80 301.6 285 53.7
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 2.8e-79 300.1 231 60.2
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 3.6e-74 283.1 311 46.6
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 1.1e-72 278.1 325 45.2
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 2.0e-72 277.3 327 51.4
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 1.6e-69 267.7 279 48.0
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 8.5e-68 261.9 273 46.9
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.2e-66 258.1 297 44.8
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 1.8e-65 254.2 378 39.4
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-64 251.5 370 41.4
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 9.1e-62 241.9 290 44.1
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 7.7e-61 238.8 258 55.0
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 7.2e-59 232.3 197 55.3
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.4e-56 223.4 179 55.3
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 5.7e-56 222.6 196 55.1
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 8.6e-52 208.8 178 55.1
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 5.4e-46 189.5 231 52.4
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 3.9e-44 183.3 226 50.0
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 2.0e-40 171.0 224 44.6
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 7.0e-38 162.5 152 50.7
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 5.2e-33 146.4 112 61.6
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 7.1e-30 136.0 94 60.6
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 7.8e-29 132.5 94 57.4
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 5.1e-28 129.8 94 58.5
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 1.5e-27 128.3 174 50.6
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 6.2e-26 122.9 125 47.2
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.4e-25 121.7 101 53.5
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 5.2e-25 119.8 102 62.7
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.4e-24 117.1 101 50.5
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 4.9e-23 113.2 108 48.1
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 5.4e-22 109.8 98 58.2
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 7.1e-22 109.4 83 57.8
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.4e-17 95.1 89 53.9
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 4.4e-16 90.1 139 48.9
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 7.6e-16 89.4 87 43.7
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.7e-12 78.2 152 44.7
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.5e-08 65.1 158 39.9
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 3.2e-06 57.4 42 61.9
Phvul.011G073000 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 9.3e-06 55.8 43 53.5


User provided reference genes

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