Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc139.36 Carica papaya HOM05D004109 ORTHO05D005867 4.8e-277 957.2 490 100.0
Ciclev10015058m.g Citrus clementina HOM05D004109 ORTHO05D005867 1.1e-231 806.6 489 83.6
Duzib160G0240 Durio zibethinus HOM05D004109 ORTHO05D005867 1.2e-230 803.1 490 82.4
GSVIVG01001692001 Vitis vinifera HOM05D004109 ORTHO05D005867 2.0e-230 802.4 490 82.4
COL.COLO4_13719 Corchorus olitorius HOM05D004109 ORTHO05D005867 3.2e-228 795.0 492 82.5
Cfa002071 Carpinus fangiana HOM05D004109 ORTHO05D005867 2.7e-227 792.0 490 81.8
Gohir.D13G129300 Gossypium hirsutum HOM05D004109 ORTHO05D005867 3.9e-226 788.1 495 81.4
Prupe.4G091700 Prunus persica HOM05D004109 ORTHO05D005867 8.6e-226 786.9 492 82.5
Gohir.A13G125500 Gossypium hirsutum HOM05D004109 ORTHO05D005867 1.1e-225 786.6 495 81.2
Gorai.013G145300 Gossypium raimondii HOM05D004109 ORTHO05D005867 1.9e-225 785.8 492 81.5
FvH4_3g10270 Fragaria vesca HOM05D004109 ORTHO05D005867 2.5e-225 785.4 491 81.7
Potri.011G163400 Populus trichocarpa HOM05D004109 ORTHO05D005867 2.5e-225 785.4 490 82.0
Atru.chr12.891 Acer truncatum HOM05D004109 ORTHO05D005867 1.8e-223 779.2 439 88.4
Sabra11G0141200 Salix brachista HOM05D004109 ORTHO05D005867 2.4e-223 778.9 484 81.8
Hma1.2p1_0892F.1_g233350 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 4.0e-223 778.1 489 81.0
PGR083G1643 Punica granatum HOM05D004109 ORTHO05D005867 5.2e-223 777.7 494 80.8
Potri.001G465300 Populus trichocarpa HOM05D004109 ORTHO05D005867 1.2e-222 776.5 441 88.2
MD10G1251700 Malus domestica HOM05D004109 ORTHO05D005867 1.5e-222 776.2 490 81.6
Eucgr.D00111 Eucalyptus grandis HOM05D004109 ORTHO05D005867 2.0e-222 775.8 511 77.1
Duzib192G0069 Durio zibethinus HOM05D004109 ORTHO05D005867 2.9e-221 771.9 439 87.9
Thecc.10G182100 Theobroma cacao HOM05D004109 ORTHO05D005867 2.9e-221 771.9 478 82.6
MD05G1271100 Malus domestica HOM05D004109 ORTHO05D005867 4.2e-220 768.1 434 88.7
ClCG03G008220 Citrullus lanatus HOM05D004109 ORTHO05D005867 6.0e-219 764.2 491 79.4
MELO3C002828.2 Cucumis melo HOM05D004109 ORTHO05D005867 7.8e-219 763.8 491 78.8
EL10Ac1g00099 Beta vulgaris HOM05D004109 ORTHO05D005867 1.7e-218 762.7 491 78.0
Solyc02g071890.3 Solanum lycopersicum HOM05D004109 ORTHO05D005867 1.7e-218 762.7 491 78.6
CiPaw.09G142500 Carya illinoinensis HOM05D004109 ORTHO05D005867 2.3e-218 762.3 490 79.4
THA.LOC104799477 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 2.3e-218 762.3 443 85.6
Hund27096 Selenicereus undatus HOM05D004109 ORTHO05D005867 3.0e-218 761.9 492 77.6
Manes.06G058300 Manihot esculenta HOM05D004109 ORTHO05D005867 3.9e-218 761.5 432 88.0
RcHm_v2.0_Chr5g0016531 Rosa chinensis HOM05D004109 ORTHO05D005867 5.1e-218 761.1 439 86.1
CsaV3_1G037190 Cucumis sativus L. HOM05D004109 ORTHO05D005867 6.6e-218 760.8 491 79.2
Sed0002561 Sechium edule HOM05D004109 ORTHO05D005867 6.6e-218 760.8 491 79.6
THA.LOC104810828 Tarenaya hassleriana HOM05D004109 ORTHO05D005867 1.1e-217 760.0 439 86.1
Nitab4.5_0001778g0190 Nicotiana tabacum HOM05D004109 ORTHO05D005867 1.5e-217 759.6 490 78.6
CARHR277790 Cardamine hirsuta HOM05D004109 ORTHO05D005867 2.5e-217 758.8 440 85.5
CANSAT01G0468 Cannabis sativa HOM05D004109 ORTHO05D005867 3.3e-217 758.4 490 78.4
Nn7g37134 Nelumbo nucifera HOM05D004109 ORTHO05D005867 3.3e-217 758.4 483 79.9
Aa31LG1G12300 Aethionema arabicum HOM05D004109 ORTHO05D005867 4.3e-217 758.1 483 79.9
BcaC04g23349 Brassica carinata HOM05D004109 ORTHO05D005867 1.6e-216 756.1 455 82.9
BolC9t53868H Brassica oleracea HOM05D004109 ORTHO05D005867 1.6e-216 756.1 455 82.9
Cc02_g32120 Coffea canephora HOM05D004109 ORTHO05D005867 1.6e-216 756.1 490 76.9
Carub.0008s2466 Capsella rubella HOM05D004109 ORTHO05D005867 2.1e-216 755.7 439 85.9
AL8G41120 Arabidopsis lyrata HOM05D004109 ORTHO05D005867 2.8e-216 755.4 437 85.8
MSTRG.20474 Avicennia marina HOM05D004109 ORTHO05D005867 2.8e-216 755.4 492 77.6
BraA09t36495Z Brassica rapa HOM05D004109 ORTHO05D005867 2.8e-216 755.4 443 84.9
CSS0039858 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 2.8e-216 755.4 440 85.2
Sp2g26950 Schrenkiella parvula HOM05D004109 ORTHO05D005867 2.8e-216 755.4 450 84.0
BcaNung04636 Brassica carinata HOM05D004109 ORTHO05D005867 3.6e-216 755.0 455 82.9
A09p08450 Brassica napus HOM05D004109 ORTHO05D005867 3.6e-216 755.0 443 84.9
C03p62550 Brassica napus HOM05D004109 ORTHO05D005867 4.8e-216 754.6 436 86.0
BolC3t18512H Brassica oleracea HOM05D004109 ORTHO05D005867 4.8e-216 754.6 436 86.0
Migut.B01142 Erythranthe guttata HOM05D004109 ORTHO05D005867 4.8e-216 754.6 491 77.6
CSS0030683 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 6.2e-216 754.2 435 86.2
TAR369G0339 Trochodendron aralioides HOM05D004109 ORTHO05D005867 6.2e-216 754.2 442 85.1
Thhalv10004035m.g Eutrema salsugineum HOM05D004109 ORTHO05D005867 1.1e-215 753.4 451 83.4
CAN.G411.27 Capsicum annuum HOM05D004109 ORTHO05D005867 1.4e-215 753.1 491 77.8
BcaB02g09768 Brassica carinata HOM05D004109 ORTHO05D005867 3.1e-215 751.9 436 85.8
FAN11G0285 Fragaria x ananassa HOM05D001785 ORTHO05D001933 3.1e-215 751.9 480 80.2
Sed0019466 Sechium edule HOM05D004109 ORTHO05D005867 3.1e-215 751.9 490 78.0
C09p09570 Brassica napus HOM05D004109 ORTHO05D005867 4.0e-215 751.5 455 82.4
AUR62000071 Chenopodium quinoa HOM05D004109 ORTHO05D005867 4.0e-215 751.5 449 82.9
Nitab4.5_0001793g0060 Nicotiana tabacum HOM05D004109 ORTHO05D005867 4.0e-215 751.5 492 77.0
AT5G63890 Arabidopsis thaliana HOM05D004109 ORTHO05D005867 5.3e-215 751.1 437 85.6
BcaC01g02640 Brassica carinata HOM05D004109 ORTHO05D005867 6.9e-215 750.7 436 85.6
HanXRQChr07g0201181 Helianthus annuus HOM05D004109 ORTHO05D005867 6.9e-215 750.7 461 81.3
Lj7A233T12 Lonicera japonica HOM05D004109 ORTHO05D005867 9.0e-215 750.4 435 85.7
Sopen02g020880 Solanum pennellii HOM05D004109 ORTHO05D005867 9.0e-215 750.4 439 84.7
Ah.05g178270 Amaranthus hybridus HOM05D004109 ORTHO05D005867 1.5e-214 749.6 491 77.2
A06p30510 Brassica napus HOM05D004109 ORTHO05D005867 2.0e-214 749.2 436 85.6
BraA06t26000Z Brassica rapa HOM05D004109 ORTHO05D005867 2.0e-214 749.2 436 85.6
Lsat_1_v5_gn_2_116541 Lactuca sativa HOM05D004109 ORTHO05D005867 5.8e-214 747.7 467 80.1
ECA238G2995 Erigeron canadensis HOM05D004109 ORTHO05D005867 9.9e-214 746.9 440 83.4
Glyma.15G131700 Glycine max HOM05D004109 ORTHO05D005867 4.9e-213 744.6 439 83.6
Lj6g0008240 Lotus japonicus HOM05D004109 ORTHO05D005867 6.4e-213 744.2 439 83.4
MBI02_g14218_MAGBIO Magnolia biondii HOM05D004109 ORTHO05D005867 1.1e-212 743.4 485 76.7
Sabra16G0315800 Salix brachista HOM05D004109 ORTHO05D005867 9.3e-212 740.3 452 83.2
CSS0036381 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.6e-211 739.6 440 84.1
Glyma.09G025600 Glycine max HOM05D004109 ORTHO05D005867 1.6e-211 739.6 439 83.4
Phvul.006G126900 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 1.6e-211 739.6 439 83.4
Ca_00854_v3 Cicer arietinum L. HOM05D004109 ORTHO05D005867 2.7e-211 738.8 454 81.5
RcHm_v2.0_Chr7g0241131 Rosa chinensis HOM05D004109 ORTHO05D005867 2.7e-211 738.8 492 77.8
PSO675G4088 Papaver somniferum HOM05D004109 ORTHO05D005867 3.5e-211 738.4 485 77.3
DCAR_003019 Daucus carota HOM05D004109 ORTHO05D005867 4.6e-211 738.0 443 81.0
Cfa005415 Carpinus fangiana HOM05D004109 ORTHO05D005867 1.0e-210 736.9 490 77.3
TWI63G1440 Tripterygium wilfordii HOM05D004109 ORTHO05D005867 1.7e-210 736.1 490 78.2
FAN25G1737 Fragaria x ananassa HOM05D001785 ORTHO05D001933 2.3e-210 735.7 485 77.9
Lalb_Chr20g0120131 Lupinus albus HOM05D004109 ORTHO05D005867 2.3e-210 735.7 441 82.5
Nitab4.5_0008572g0030 Nicotiana tabacum HOM05D004109 ORTHO05D005867 3.0e-210 735.3 473 78.6
Rhsim07G0074000 Rhododendron simsii HOM05D004109 ORTHO05D005867 3.0e-210 735.3 439 82.9
Psat1g166680 Pisum sativum HOM05D004109 ORTHO05D005867 3.9e-210 734.9 436 83.5
FAN21G0038 Fragaria x ananassa HOM05D001785 ORTHO05D001933 5.1e-210 734.6 486 77.8
Aqoxy7G00406 Aquilegia oxysepala HOM05D004109 ORTHO05D005867 6.6e-210 734.2 484 78.1
QL08p023474 Quercus lobata HOM05D004109 ORTHO05D005867 2.5e-209 732.3 488 77.7
arahy.Tifrunner.gnm1.ann1.E4EMQ7 Arachis hypogaea HOM05D004109 ORTHO05D005867 2.1e-208 729.2 474 78.1
Medtr2g030520 Medicago truncatula HOM05D004109 ORTHO05D005867 1.1e-207 726.9 471 77.3
PSO675G5109 Papaver somniferum HOM05D004109 ORTHO05D005867 1.1e-207 726.9 485 76.5
FAN16G0137 Fragaria x ananassa HOM05D001785 ORTHO05D001933 1.8e-207 726.1 486 77.4
SGA_v2.0_scaffold114G32023 Striga asiatica HOM05D004109 ORTHO05D005867 1.8e-207 726.1 434 82.5
Glyma.08G081500 Glycine max HOM05D004109 ORTHO05D005867 1.2e-206 723.4 435 81.8
Lj4g0018356 Lotus japonicus HOM05D004109 ORTHO05D005867 4.5e-206 721.5 435 82.3
Os01g0232700 Oryza sativa ssp. japonica HOM05D004109 ORTHO05D005867 5.8e-206 721.1 432 82.6
arahy.Tifrunner.gnm1.ann1.S2DTMZ Arachis hypogaea HOM05D004109 ORTHO05D005867 1.7e-205 719.5 432 81.0
Phvul.002G198300 Phaseolus vulgaris HOM05D004109 ORTHO05D005867 2.2e-205 719.2 435 81.6
ATR0810G187 Amborella trichopoda HOM05D004109 ORTHO05D005867 4.9e-205 718.0 431 82.1
arahy.Tifrunner.gnm1.ann1.NJCF43 Arachis hypogaea HOM05D004256 ORTHO05D005224 8.4e-205 717.2 432 80.8
CDE06G2252 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.1e-204 716.8 479 75.6
arahy.Tifrunner.gnm1.ann1.X3TBAN Arachis hypogaea HOM05D004109 ORTHO05D005867 1.6e-203 713.0 505 73.3
vmacro13807 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 6.0e-203 711.1 440 80.5
VMungo0540G0358 Vigna mungo HOM05D004109 ORTHO05D005867 1.0e-202 710.3 448 80.4
HPP92_000958 Vanilla planifolia HOM05D004109 ORTHO05D005867 3.9e-202 708.4 488 74.2
unitig_0.g2208 Utricularia gibba HOM05D004109 ORTHO05D005867 1.8e-199 699.5 431 80.0
CDE03G0162 Ceratophyllum demersum HOM05D004109 ORTHO05D005867 1.7e-197 693.0 437 78.3
SEGI_09299 Sequoiadendron giganteum HOM05D004109 ORTHO05D005867 2.7e-195 685.6 433 77.6
Sc26g0000620 Simmondsia chinensis HOM05D004109 ORTHO05D005867 7.4e-193 677.6 413 81.4
BcaNung04631 Brassica carinata HOM05D004109 ORTHO05D005867 2.0e-190 669.5 439 78.4
Nitab4.5_0003703g0080 Nicotiana tabacum HOM05D004109 ORTHO05D005867 7.9e-187 657.5 387 82.9
Pp3c25_2460 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.3e-186 656.0 432 74.1
Pp3c16_4820 Physcomitrium patens HOM05D004109 ORTHO05D005867 2.2e-181 639.4 432 73.6
Mapoly0060s0093 Marchantia polymorpha HOM05D004109 ORTHO05D005867 1.4e-180 636.7 437 73.0
SMO137G0061 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 7.2e-180 634.4 427 74.7
CBR_g8928 Chara braunii HOM05D004109 ORTHO05D005867 9.7e-177 624.0 430 71.9
AagrBONN_evm.TU.Sc2ySwM_228.1565 Anthoceros agrestis HOM05D004109 ORTHO05D005867 1.7e-176 623.2 471 68.4
Cre02.g077350 Chlamydomonas reinhardtii HOM05D004109 ORTHO05D005867 3.7e-168 595.5 427 69.3
PRCOL_00002586 Prasinoderma coloniale HOM05D004109 ORTHO05D005867 2.4e-167 592.8 429 69.9
AUR62019245 Chenopodium quinoa HOM05D004109 ORTHO05D005867 1.2e-166 590.5 356 81.7
vmacro23219 Vaccinium macrocarpon HOM05D004109 ORTHO05D005867 3.1e-159 565.8 485 63.9
MCO06G190 Micromonas commoda HOM05D004109 ORTHO05D005867 1.3e-157 560.5 428 67.5
CSS0014434 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.4e-151 540.4 318 85.2
Dinv23908 Davidia involucrata HOM05D004109 ORTHO05D005867 2.4e-151 539.7 315 85.1
Haze_16420 Corylus avellana HOM05D004109 ORTHO05D005867 1.0e-125 454.5 317 74.4
Zm00001eb059830 Zea mays HOM05D004109 ORTHO05D005867 1.2e-118 431.0 258 82.9
SMO170G0053 Selaginella moellendorffii HOM05D004109 ORTHO05D005867 4.6e-118 429.1 331 68.6
TPR.G26361 Trifolium pratense HOM05D004109 ORTHO05D005867 4.3e-116 422.5 269 79.2
Cfa023091 Carpinus fangiana HOM05D004109 ORTHO05D005867 8.9e-114 414.8 449 49.7
VMungo0251G1323 Vigna mungo HOM05D004256 ORTHO05D005224 5.8e-113 412.1 258 79.5
Peaxi162Scf00112g01722 Petunia axillaris HOM05D004109 ORTHO05D005867 6.0e-110 402.1 232 84.1
Peaxi162Scf00112g01719 Petunia axillaris HOM05D004109 ORTHO05D005867 6.0e-94 349.0 227 78.4
Migut.B01141 Erythranthe guttata HOM05D004109 ORTHO05D005867 2.1e-91 340.5 405 52.1
Actinidia34688 Actinidia chinensis HOM05D004109 ORTHO05D005867 4.8e-91 339.3 201 84.6
Haze_01914 Corylus avellana HOM05D004109 ORTHO05D005867 1.2e-86 324.7 182 88.5
VMungo0251G3018 Vigna mungo HOM05D004109 ORTHO05D005867 1.4e-82 311.2 176 85.2
Haze_01911 Corylus avellana HOM05D004109 ORTHO05D001172 3.3e-76 290.0 231 67.1
PSO675G6350 Papaver somniferum HOM05D004109 ORTHO05D005867 4.1e-74 283.1 204 72.1
Haze_27135 Corylus avellana HOM05D004109 ORTHO05D005867 2.3e-69 267.3 420 40.0
Lsat_1_v5_gn_0_46200 Lactuca sativa HOM05D004109 ORTHO05D005867 1.3e-64 251.5 295 47.1
BolC8t51924H Brassica oleracea HOM05D004109 ORTHO05D005867 5.0e-64 249.6 216 61.6
C01p45280 Brassica napus HOM05D004109 ORTHO05D005867 1.9e-63 247.7 223 60.5
C03p60030 Brassica napus HOM05D004109 ORTHO05D005867 6.1e-62 242.7 216 60.2
BolC3t15408H Brassica oleracea HOM05D004109 ORTHO05D005867 3.0e-61 240.4 245 55.5
TPR.G39866 Trifolium pratense HOM05D004109 ORTHO05D005867 3.8e-56 223.4 124 85.5
BcaC01g02810 Brassica carinata HOM05D004109 ORTHO05D005867 5.0e-56 223.0 214 56.1
CSS0037475 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 4.5e-49 199.9 116 83.6
SMO137G0105 Selaginella moellendorffii HOM05D004109 ORTHO05D019780 6.3e-43 179.5 188 54.3
CSS0025757 Camellia sinensis var. sinensis HOM05D004109 ORTHO05D005867 1.6e-41 174.9 95 89.5
PGSC0003DMG400028409 Solanum tuberosum HOM05D004109 ORTHO05D005867 2.6e-36 157.5 88 85.2
vmacro20533 Vaccinium macrocarpon HOM05D004109 ORTHO05D000800 6.5e-32 142.9 158 51.3
vmacro20532 Vaccinium macrocarpon HOM05D004109 ORTHO05D426529 9.8e-28 129.0 139 55.4
Lsat_1_v5_gn_0_43980 Lactuca sativa HOM05D004109 ORTHO05D005867 1.3e-27 128.6 133 46.6
HanXRQChr17g0545961 Helianthus annuus HOM05D004109 ORTHO05D225632 8.3e-27 125.9 80 72.5
Lsat_1_v5_gn_2_130860 Lactuca sativa HOM05D004109 ORTHO05D019780 9.5e-23 112.5 67 83.6
BcaC09g48845 Brassica carinata HOM05D004109 ORTHO05D009034 2.3e-21 107.8 212 38.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 3.7e-19 100.5 125 48.0
Hma1.2p1_0258F.1_g104030 Hydrangea macrophylla HOM05D004109 ORTHO05D005867 5.4e-18 96.7 64 76.6
PSO063G0645 Papaver somniferum HOM05D004109 ORTHO05D019780 7.8e-17 92.8 57 80.7
vmacro20529 Vaccinium macrocarpon HOM05D004109 ORTHO05D427059 1.3e-16 92.0 74 59.5
AagrBONN_evm.TU.Sc2ySwM_117.3019 Anthoceros agrestis HOM05D000719 ORTHO05D000569 1.9e-15 88.2 66 69.7
Actinidia02690 Actinidia chinensis HOM05D004109 ORTHO05D054316 6.8e-13 79.7 49 81.6
arahy.Tifrunner.gnm1.ann1.P7LCDJ Arachis hypogaea HOM05D004109 ORTHO05D019780 2.6e-12 77.8 48 81.2
BolC3t18268H Brassica oleracea HOM05D004109 ORTHO05D005867 5.8e-12 76.6 44 84.1
arahy.Tifrunner.gnm1.ann1.V2D64V Arachis hypogaea HOM05D004109 ORTHO05D019780 1.7e-11 75.1 69 62.3
BolC3t18267H Brassica oleracea HOM05D004109 ORTHO05D019780 2.2e-11 74.7 46 80.4
Glyma.20G022700 Glycine max HOM05D004109 ORTHO05D019780 1.6e-09 68.6 37 91.9
vmacro09568 Vaccinium macrocarpon HOM05D004109 ORTHO05D003511 6.0e-09 66.6 97 49.5
Zm00001eb213480 Zea mays HOM05D002921 ORTHO05D003258 6.0e-09 66.6 69 62.3
SMO137G0306 Selaginella moellendorffii HOM05D004109 ORTHO05D377039 1.6e-06 58.5 31 83.9
vmacro07499 Vaccinium macrocarpon HOM05D004109 ORTHO05D426741 1.6e-06 58.5 51 62.7


User provided reference genes

Program Settings