Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 7.4e-63 244.2 175 100.0
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 7.5e-47 191.0 164 82.3
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 1.7e-46 189.9 165 73.9
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 3.7e-46 188.7 165 72.1
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 1.1e-45 187.2 165 67.9
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-45 187.2 165 67.9
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.1e-45 187.2 165 67.9
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 3.1e-45 185.7 166 81.9
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.6e-44 183.3 177 68.4
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.7e-44 182.6 164 67.1
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 4.5e-44 181.8 165 83.6
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 5.9e-44 181.4 166 81.3
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 5.9e-44 181.4 166 81.3
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.3e-43 180.3 177 78.0
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 1.7e-43 179.9 167 70.7
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 3.8e-43 178.7 165 80.0
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 5.0e-43 178.3 165 69.1
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 8.6e-43 177.6 165 78.8
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 1.1e-42 177.2 165 69.7
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 1.9e-42 176.4 165 65.5
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 5.6e-42 174.9 165 64.8
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 7.2e-42 174.5 167 67.1
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 7.2e-42 174.5 165 68.5
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 1.2e-41 173.7 175 66.3
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 1.6e-41 173.3 177 74.0
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 1.6e-41 173.3 172 79.1
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 4.7e-41 171.8 158 80.4
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 6.1e-41 171.4 170 65.9
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 8.0e-41 171.0 167 66.5
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 8.0e-41 171.0 158 76.6
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.0e-40 170.6 162 66.0
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 3.0e-40 169.1 158 71.5
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 4.0e-40 168.7 165 67.9
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 1.5e-39 166.8 169 52.7
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 2.6e-39 166.0 165 80.6
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 2.6e-39 166.0 165 81.2
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 3.4e-39 165.6 164 68.3
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 4.4e-39 165.2 167 67.7
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 7.5e-39 164.5 175 76.6
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 7.5e-39 164.5 175 64.6
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 9.8e-39 164.1 166 78.3
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 3.7e-38 162.2 164 62.2
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.7e-38 162.2 177 70.6
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 3.7e-38 162.2 164 67.1
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 6.4e-38 161.4 173 68.8
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 8.3e-38 161.0 176 67.6
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.1e-37 160.6 161 66.5
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 1.4e-37 160.2 159 77.4
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.8e-37 159.8 175 66.3
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.8e-37 159.8 165 62.4
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 1.8e-37 159.8 166 76.5
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.8e-37 159.8 164 74.4
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.4e-37 159.5 172 73.8
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 3.2e-37 159.1 169 65.7
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 4.1e-37 158.7 175 69.7
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 5.4e-37 158.3 160 67.5
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 7.0e-37 157.9 155 75.5
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 9.2e-37 157.5 164 76.8
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 9.2e-37 157.5 164 76.8
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.2e-36 157.1 165 61.8
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-36 156.4 166 67.5
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 2.0e-36 156.4 166 67.5
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 2.0e-36 156.4 166 67.5
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 2.7e-36 156.0 165 67.3
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 2.7e-36 156.0 240 40.4
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 3.5e-36 155.6 158 60.8
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 3.5e-36 155.6 176 77.3
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 3.5e-36 155.6 169 62.7
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 3.5e-36 155.6 164 73.8
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 3.5e-36 155.6 177 67.2
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 4.6e-36 155.2 181 63.0
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 5.9e-36 154.8 176 77.3
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.9e-36 154.8 176 66.5
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 7.8e-36 154.5 151 80.1
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 7.8e-36 154.5 165 72.7
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.0e-35 154.1 167 74.9
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.0e-35 154.1 167 74.9
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.3e-35 153.7 176 76.7
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.7e-35 153.3 163 74.2
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.9e-35 152.1 177 72.9
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 3.9e-35 152.1 164 76.2
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 5.0e-35 151.8 164 68.9
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 6.6e-35 151.4 166 72.9
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 8.6e-35 151.0 171 72.5
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.1e-34 150.6 172 76.7
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 1.1e-34 150.6 164 74.4
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 1.1e-34 150.6 175 70.3
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 1.5e-34 150.2 172 77.3
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 1.5e-34 150.2 162 66.7
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.9e-34 149.8 164 72.6
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 1.9e-34 149.8 172 76.7
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 1.9e-34 149.8 172 76.7
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.9e-34 149.8 164 71.3
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.9e-34 149.8 164 73.2
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 2.5e-34 149.4 160 66.2
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.5e-34 149.4 175 67.4
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 3.3e-34 149.1 176 69.9
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 4.3e-34 148.7 160 75.0
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 4.3e-34 148.7 165 67.9
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 4.3e-34 148.7 151 72.8
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 5.6e-34 148.3 164 71.3
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 7.3e-34 147.9 166 63.3
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 9.5e-34 147.5 165 53.3
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 9.5e-34 147.5 166 70.5
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 1.6e-33 146.7 164 75.0
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.1e-33 146.4 165 58.8
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 2.8e-33 146.0 173 75.7
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 3.6e-33 145.6 160 65.0
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 3.6e-33 145.6 163 74.8
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.7e-33 145.2 177 71.8
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 4.7e-33 145.2 162 64.8
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 8.0e-33 144.4 158 52.5
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 6.8e-32 141.4 153 74.5
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 6.8e-32 141.4 150 80.0
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.9e-32 141.0 173 48.0
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 8.9e-32 141.0 149 65.8
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 1.2e-31 140.6 149 76.5
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 1.5e-31 140.2 160 63.8
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 2.0e-31 139.8 172 56.4
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 2.0e-31 139.8 173 47.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.6e-31 139.4 160 63.8
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 2.6e-31 139.4 160 63.8
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 5.8e-31 138.3 160 71.9
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 7.5e-31 137.9 164 47.0
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 7.5e-31 137.9 164 47.0
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 7.5e-31 137.9 166 56.6
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 1.3e-30 137.1 160 63.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 1.7e-30 136.7 167 47.9
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 2.9e-30 136.0 138 72.5
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 1.1e-29 134.0 155 60.6
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 1.1e-26 124.0 168 43.5
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 7.3e-26 121.3 156 73.1
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 4.7e-25 118.6 164 54.3
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 8.1e-25 117.9 158 68.4
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 1.5e-23 113.6 147 72.1
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 2.0e-23 113.2 146 59.6
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 7.1e-21 104.8 129 58.9
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 3.0e-19 99.4 129 59.7
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 6.6e-19 98.2 135 59.3
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.5e-18 96.3 76 61.8
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 9.5e-18 94.4 58 72.4
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.1e-16 90.9 51 78.4
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 5.8e-15 85.1 121 54.5
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 1.7e-14 83.6 70 52.9
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 2.2e-14 83.2 152 46.7
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 6.4e-14 81.6 111 56.8
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 7.1e-13 78.2 118 34.7
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 2.1e-12 76.6 46 73.9
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.0e-11 74.3 115 57.4
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 1.9e-10 70.1 50 60.0


User provided reference genes

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