Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 7.9e-58 226.9 112 100.0
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.1e-35 153.3 111 69.4
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 1.9e-35 152.5 117 69.2
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.6e-34 149.4 112 65.2
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 7.9e-34 147.1 122 64.8
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 7.9e-34 147.1 112 63.4
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.3e-33 145.6 116 65.5
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 3.9e-33 144.8 112 66.1
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 3.9e-33 144.8 113 66.4
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 6.7e-33 144.1 112 64.3
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.1e-32 143.3 119 69.7
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 2.6e-32 142.1 113 66.4
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 7.4e-32 140.6 114 61.4
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 7.4e-32 140.6 115 63.5
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 7.4e-32 140.6 115 63.5
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 7.4e-32 140.6 113 64.6
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-31 139.4 114 66.7
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.7e-31 139.4 114 66.7
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.7e-31 139.4 114 66.7
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.7e-31 139.4 113 64.6
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 4.8e-31 137.9 113 62.8
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 2.6e-29 132.1 118 64.4
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.4e-29 131.7 115 60.9
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.0e-28 130.2 112 56.2
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.3e-28 129.8 109 60.6
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 1.7e-28 129.4 112 58.0
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.2e-28 129.0 118 58.5
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.2e-28 129.0 118 58.5
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 2.2e-28 129.0 112 58.0
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.9e-28 128.6 113 60.2
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 8.5e-28 127.1 112 55.4
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.1e-27 126.7 114 59.6
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 1.1e-27 126.7 113 60.2
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 1.1e-27 126.7 107 60.7
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 1.4e-27 126.3 123 61.0
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.9e-27 125.9 112 59.8
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 3.2e-27 125.2 110 58.2
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 4.2e-27 124.8 113 57.5
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 4.2e-27 124.8 113 57.5
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.2e-27 124.8 114 60.5
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 5.5e-27 124.4 114 57.9
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 7.2e-27 124.0 112 53.6
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 9.4e-27 123.6 114 59.6
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.2e-26 123.2 112 58.0
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.1e-26 122.5 114 58.8
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.1e-26 122.5 112 58.0
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.7e-26 122.1 114 55.3
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.6e-26 121.7 115 59.1
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 8.0e-26 120.6 112 55.4
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.0e-25 120.2 114 57.0
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 1.0e-25 120.2 113 61.1
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.4e-25 119.8 113 60.2
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 3.0e-25 118.6 115 57.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 3.0e-25 118.6 115 57.4
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.7e-25 117.5 118 60.2
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 6.7e-25 117.5 123 59.3
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 8.8e-25 117.1 110 54.5
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 2.0e-24 115.9 100 55.0
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.6e-24 115.5 116 56.0
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.6e-24 115.5 116 56.0
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 5.7e-24 114.4 113 57.5
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.3e-23 113.2 116 55.2
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.3e-23 113.2 114 53.5
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 1.3e-23 113.2 114 50.0
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 2.2e-23 112.5 116 54.3
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 4.8e-23 111.3 115 47.8
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 8.2e-23 110.5 102 54.9
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-22 109.8 114 53.5
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.8e-22 109.4 113 53.1
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 2.4e-22 109.0 84 69.0
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 4.1e-22 108.2 112 49.1
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 7.0e-22 107.5 113 52.2
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 7.0e-22 107.5 99 56.6
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 9.1e-22 107.1 115 51.3
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 9.1e-22 107.1 98 56.1
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 1.2e-21 106.7 99 53.5
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 1.2e-21 106.7 114 51.8
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 2.6e-21 105.5 114 48.2
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 4.5e-21 104.8 112 48.2
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 4.5e-21 104.8 115 51.3
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 5.9e-21 104.4 112 50.0
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 5.9e-21 104.4 113 51.3
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 5.9e-21 104.4 113 51.3
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 7.7e-21 104.0 111 53.2
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 7.7e-21 104.0 113 47.8
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 1.3e-20 103.2 97 55.7
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.3e-20 103.2 113 51.3
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 1.7e-20 102.8 113 50.4
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.7e-20 102.8 109 49.5
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 2.2e-20 102.4 113 50.4
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.9e-20 102.1 116 48.3
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.9e-20 102.1 113 48.7
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.8e-20 101.7 116 48.3
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.5e-20 100.5 116 50.0
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 1.1e-19 100.1 114 48.2
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-19 99.8 115 47.0
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 1.9e-19 99.4 112 45.5
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 2.5e-19 99.0 113 48.7
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 4.2e-19 98.2 113 49.6
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 5.5e-19 97.8 101 47.5
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 9.4e-19 97.1 112 47.3
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 1.2e-18 96.7 100 58.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.2e-18 96.7 113 50.4
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.6e-18 96.3 114 47.4
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 2.1e-18 95.9 103 50.5
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 2.1e-18 95.9 98 52.0
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 2.7e-18 95.5 101 53.5
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.6e-18 95.1 112 44.6
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 8.0e-18 94.0 116 45.7
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 2.3e-17 92.4 112 46.4
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 3.0e-17 92.0 112 45.5
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 8.8e-17 90.5 112 43.8
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 8.8e-17 90.5 114 46.5
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.2e-16 90.1 114 44.7
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.5e-16 89.7 106 47.2
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 1.5e-16 89.7 114 46.5
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 1.5e-16 89.7 114 46.5
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.0e-16 89.4 112 45.5
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 3.3e-16 88.6 102 47.1
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 3.3e-16 88.6 105 41.9
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 3.3e-16 88.6 114 45.6
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 4.4e-16 88.2 100 47.0
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 4.4e-16 88.2 114 45.6
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 4.4e-16 88.2 114 45.6
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 4.4e-16 88.2 108 46.3
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.7e-15 86.3 116 44.8
Peaxi162Scf00942g00037 Petunia axillaris HOM05D005150 ORTHO05D006070 2.2e-15 85.9 93 48.4
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 2.8e-15 85.5 71 57.7
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.8e-15 85.5 116 42.2
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 3.7e-15 85.1 116 42.2
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 6.3e-15 84.3 116 42.2
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 8.2e-15 84.0 116 43.1
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.4e-14 82.4 104 49.0
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 3.1e-14 82.0 104 43.3
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 7.0e-14 80.9 84 45.2
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 2.0e-13 79.3 112 39.3
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.0e-12 77.0 104 43.3
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.0e-12 77.0 116 39.7
Peaxi162Scf32072g00001 Petunia axillaris HOM05D005150 ORTHO05D006070 2.9e-12 75.5 62 58.1
Hund24140 Selenicereus undatus HOM05D005150 ORTHO05D006070 5.0e-12 74.7 110 38.2
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 1.6e-10 69.7 116 43.1
Migut.M00011 Erythranthe guttata HOM05D005150 ORTHO05D006070 1.6e-10 69.7 110 40.9
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.7e-10 68.2 98 42.9
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 2.3e-09 65.9 114 39.5
ATR0712G027 Amborella trichopoda HOM05D005150 ORTHO05D006070 2.2e-07 59.3 123 35.8


User provided reference genes

Program Settings