Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc136.59 Carica papaya HOM05D007471 ORTHO05D009481 1.9e-133 479.2 241 100.0
Dinv05327 Davidia involucrata HOM05D007471 ORTHO05D009481 4.3e-85 318.5 242 64.9
CSS0003771 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 5.4e-80 301.6 243 61.3
Ciclev10016450m.g Citrus clementina HOM05D007471 ORTHO05D009481 1.3e-78 297.0 244 63.1
QL04p066931 Quercus lobata HOM05D007471 ORTHO05D009481 1.7e-78 296.6 242 57.9
Manes.12G067200 Manihot esculenta HOM05D007471 ORTHO05D009481 3.0e-78 295.8 243 57.6
Hma1.2p1_0599F.1_g186930 Hydrangea macrophylla HOM05D007471 ORTHO05D009481 2.5e-77 292.7 242 58.7
Actinidia12353 Actinidia chinensis HOM05D007471 ORTHO05D009481 5.6e-77 291.6 242 57.9
TWI36G0936 Tripterygium wilfordii HOM05D007471 ORTHO05D009481 2.1e-76 289.7 242 58.3
Eucgr.K01386 Eucalyptus grandis HOM05D007471 ORTHO05D009481 8.9e-75 284.3 244 57.0
TAR626G0037 Trochodendron aralioides HOM05D007471 ORTHO05D009481 1.2e-74 283.9 243 56.0
Psat1g019920 Pisum sativum HOM05D007471 ORTHO05D009481 5.8e-74 281.6 244 57.8
MD17G1121200 Malus domestica HOM05D007471 ORTHO05D009481 7.6e-74 281.2 244 59.4
Lj8A138T38 Lonicera japonica HOM05D007471 ORTHO05D009481 2.4e-72 276.2 243 55.1
MD17G1122600 Malus domestica HOM05D007471 ORTHO05D009481 4.2e-72 275.4 244 59.0
RcHm_v2.0_Chr2g0155251 Rosa chinensis HOM05D007471 ORTHO05D009481 9.3e-72 274.2 243 56.0
Rhsim06G0179200 Rhododendron simsii HOM05D000358 ORTHO05D001562 1.2e-71 273.9 242 56.6
THA.LOC104819026 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 2.7e-71 272.7 245 56.3
Sopen07g023700 Solanum pennellii HOM05D007471 ORTHO05D009481 3.5e-71 272.3 242 54.5
CARHR082340 Cardamine hirsuta HOM05D007471 ORTHO05D009481 7.8e-71 271.2 243 54.3
Lalb_Chr10g0094201 Lupinus albus HOM05D007471 ORTHO05D009481 7.8e-71 271.2 243 54.7
Haze_12583 Corylus avellana HOM05D007471 ORTHO05D009481 1.3e-70 270.4 242 56.2
Nitab4.5_0003086g0070 Nicotiana tabacum HOM05D007471 ORTHO05D009481 1.3e-70 270.4 242 53.7
Solyc07g045150.3 Solanum lycopersicum HOM05D007471 ORTHO05D009481 1.3e-70 270.4 242 54.1
BcaB03g14688 Brassica carinata HOM05D007471 ORTHO05D009481 1.7e-70 270.0 243 53.5
Sp3g06580 Schrenkiella parvula HOM05D007471 ORTHO05D009481 6.6e-70 268.1 243 52.7
AL3G19000 Arabidopsis lyrata HOM05D007471 ORTHO05D009481 2.5e-69 266.2 243 51.0
FAN05G3962 Fragaria x ananassa HOM05D007471 ORTHO05D009481 5.6e-69 265.0 243 53.5
MELO3C024177.2 Cucumis melo HOM05D007471 ORTHO05D009481 7.3e-69 264.6 247 53.8
Lj6g0025127 Lotus japonicus HOM05D007471 ORTHO05D009481 7.3e-69 264.6 244 53.3
AT3G07640 Arabidopsis thaliana HOM05D007471 ORTHO05D009481 9.6e-69 264.2 243 51.0
FvH4_6g40230 Fragaria vesca HOM05D007471 ORTHO05D009481 9.6e-69 264.2 243 53.5
PGSC0003DMG402017414 Solanum tuberosum HOM05D007471 ORTHO05D009481 9.6e-69 264.2 242 52.5
FAN14G4986 Fragaria x ananassa HOM05D007471 ORTHO05D009481 3.6e-68 262.3 243 53.5
Sed0023252 Sechium edule HOM05D007471 ORTHO05D009481 4.8e-68 261.9 244 52.5
Thhalv10021420m.g Eutrema salsugineum HOM05D007471 ORTHO05D009481 6.2e-68 261.5 243 51.9
Peaxi162Scf00359g00320 Petunia axillaris HOM05D007471 ORTHO05D009481 1.4e-67 260.4 242 51.7
BcaC01g04271 Brassica carinata HOM05D007471 ORTHO05D009481 3.1e-67 259.2 243 53.1
C03p43000 Brassica napus HOM05D007471 ORTHO05D009481 3.1e-67 259.2 243 53.1
Glyma.15G195100 Glycine max HOM05D007471 ORTHO05D009481 3.1e-67 259.2 243 50.6
CsaV3_7G002330 Cucumis sativus L. HOM05D007471 ORTHO05D009481 4.0e-67 258.8 247 52.2
Glyma.09G086000 Glycine max HOM05D007471 ORTHO05D009481 6.9e-67 258.1 243 50.6
Medtr2g049140 Medicago truncatula HOM05D007471 ORTHO05D009481 6.9e-67 258.1 243 53.1
FAN09G1454 Fragaria x ananassa HOM05D007471 ORTHO05D009481 1.2e-66 257.3 243 52.7
Carub.0003s0722 Capsella rubella HOM05D007471 ORTHO05D009481 4.4e-66 255.4 245 51.0
BolC3t16568H Brassica oleracea HOM05D007471 ORTHO05D009481 5.8e-66 255.0 243 52.3
A03p35390 Brassica napus HOM05D007471 ORTHO05D009481 2.2e-65 253.1 243 50.6
BraA03t12717Z Brassica rapa HOM05D007471 ORTHO05D009481 2.2e-65 253.1 243 50.6
GSVIVG01030129001 Vitis vinifera HOM05D007471 ORTHO05D009481 4.9e-65 251.9 242 53.7
PGR044G0015 Punica granatum HOM05D007471 ORTHO05D009481 8.4e-65 251.1 242 50.4
CAN.G826.3 Capsicum annuum HOM05D007471 ORTHO05D009481 2.4e-64 249.6 242 50.0
Cc05_g01930 Coffea canephora HOM05D007471 ORTHO05D009481 2.4e-64 249.6 245 49.8
Migut.M00062 Erythranthe guttata HOM05D007471 ORTHO05D009481 5.4e-64 248.4 242 53.7
Nn1g07565 Nelumbo nucifera HOM05D007471 ORTHO05D009481 7.1e-64 248.1 243 52.3
MSTRG.6626 Avicennia marina HOM05D007471 ORTHO05D009481 9.3e-64 247.7 242 52.9
PSO210G0038 Papaver somniferum HOM05D007471 ORTHO05D009481 1.6e-63 246.9 243 50.6
Aa31LG5G18220 Aethionema arabicum HOM05D007471 ORTHO05D009481 3.0e-62 242.7 266 48.5
Sc21g0000400 Simmondsia chinensis HOM05D007471 ORTHO05D009481 5.1e-62 241.9 245 49.8
PSO210G4841 Papaver somniferum HOM05D007471 ORTHO05D009481 6.6e-62 241.5 245 49.0
HanXRQChr09g0257421 Helianthus annuus HOM05D007471 ORTHO05D009481 3.3e-61 239.2 243 50.6
Ca_02565_v3 Cicer arietinum L. HOM05D007471 ORTHO05D009481 4.8e-60 235.3 221 53.8
Atru.BG.43.p Acer truncatum HOM05D007471 ORTHO05D009481 8.1e-60 234.6 188 63.3
vmacro12060 Vaccinium macrocarpon HOM05D007471 ORTHO05D009481 1.4e-59 233.8 202 56.9
VMungo1309G3041 Vigna mungo HOM05D007471 ORTHO05D009481 9.0e-59 231.1 243 47.3
Phvul.009G214800 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 1.5e-58 230.3 243 46.9
Lsat_1_v5_gn_9_102921 Lactuca sativa HOM05D007471 ORTHO05D009481 2.6e-58 229.6 242 49.2
SalBow7G1274 Salvia bowleyana HOM05D007471 ORTHO05D009481 3.4e-58 229.2 242 50.4
THA.LOC104822442 Tarenaya hassleriana HOM05D007471 ORTHO05D009481 4.9e-57 225.3 246 48.8
ClCG02G003070 Citrullus lanatus HOM05D007471 ORTHO05D009481 8.4e-57 224.6 292 41.8
MBI14_g27042_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 1.2e-55 220.7 232 48.3
ATR0751G158 Amborella trichopoda HOM05D007471 ORTHO05D009481 1.6e-55 220.3 243 49.0
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 1.6e-55 220.3 238 50.4
ECA240G3131 Erigeron canadensis HOM05D001349 ORTHO05D001980 1.6e-55 220.3 242 50.4
AUR62018237 Chenopodium quinoa HOM05D007471 ORTHO05D009481 6.0e-55 218.4 243 47.3
AUR62037766 Chenopodium quinoa HOM05D007471 ORTHO05D009481 3.9e-54 215.7 243 46.5
Oeu000672.1 Olea europaea HOM05D007471 ORTHO05D009481 8.7e-54 214.5 200 53.5
Gohir.D07G199700 Gossypium hirsutum HOM05D007471 ORTHO05D009481 1.6e-52 210.3 251 46.2
Gorai.001G223900 Gossypium raimondii HOM05D007471 ORTHO05D009481 1.1e-51 207.6 251 45.8
Gohir.A07G193500 Gossypium hirsutum HOM05D007471 ORTHO05D009481 4.0e-51 205.7 251 45.4
Duzib133G1025 Durio zibethinus HOM05D007471 ORTHO05D009481 9.0e-51 204.5 248 45.2
Thecc.01G199800 Theobroma cacao HOM05D007471 ORTHO05D009481 2.0e-50 203.4 248 45.6
Phvul.009G215100 Phaseolus vulgaris HOM05D007471 ORTHO05D009481 7.6e-50 201.4 243 43.2
Prupe.3G192700 Prunus persica HOM05D007471 ORTHO05D009481 1.3e-49 200.7 174 56.9
CSS0004770 Camellia sinensis var. sinensis HOM05D007471 ORTHO05D009481 8.4e-49 198.0 168 58.9
BcaB03g14686 Brassica carinata HOM05D007471 ORTHO05D009481 1.9e-48 196.8 213 49.8
DCAR_019662 Daucus carota HOM05D007471 ORTHO05D009481 1.8e-46 190.3 205 45.4
Zm00001eb245410 Zea mays HOM05D007471 ORTHO05D009481 8.7e-46 188.0 241 41.1
FAN02G2672 Fragaria x ananassa HOM05D007471 ORTHO05D009481 9.6e-45 184.5 243 41.6
TPR.G20279 Trifolium pratense HOM05D007471 ORTHO05D009481 1.8e-43 180.3 175 51.4
Os02g0582400 Oryza sativa ssp. japonica HOM05D007471 ORTHO05D009481 2.4e-43 179.9 239 38.9
COL.COLO4_19658 Corchorus olitorius HOM05D007471 ORTHO05D009481 6.5e-41 171.8 173 53.2
TPR.G28406 Trifolium pratense HOM05D007471 ORTHO05D009481 1.0e-38 164.5 203 44.3
SGA_v2.0_scaffold73G24486 Striga asiatica HOM05D007471 ORTHO05D009481 8.7e-38 161.4 239 39.3
CDE11G0370 Ceratophyllum demersum HOM05D007471 ORTHO05D009481 3.3e-37 159.5 251 37.8
SHI10184 Sapria himalayana HOM05D007471 ORTHO05D009481 3.8e-33 146.0 156 44.9
MBI14_g39587_MAGBIO Magnolia biondii HOM05D007471 ORTHO05D009481 5.0e-33 145.6 236 35.6
SEGI_00651 Sequoiadendron giganteum HOM05D007471 ORTHO05D009481 4.8e-28 129.0 246 35.4
Peaxi162Scf00289g00310 Petunia axillaris HOM05D007471 ORTHO05D009481 1.0e-22 111.3 95 58.9
ClCG02G003080 Citrullus lanatus HOM05D007471 ORTHO05D009481 4.0e-14 82.8 72 52.8
FAN05G5088 Fragaria x ananassa HOM05D000100 ORTHO05D000052 1.3e-12 77.8 71 49.3
Ah.10g032600 Amaranthus hybridus HOM05D007471 ORTHO05D009481 5.3e-11 72.4 88 42.0
Lsat_1_v5_gn_3_93600 Lactuca sativa HOM05D007471 ORTHO05D233800 1.5e-08 64.3 88 40.9


User provided reference genes

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