Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 0.0e+00 1103.2 555 100.0
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 2.3e-230 802.4 514 79.0
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 1.6e-228 796.2 515 78.4
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 3.6e-228 795.0 512 78.5
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 4.0e-227 791.6 515 78.3
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 9.8e-226 786.9 515 77.7
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 2.7e-223 778.9 516 77.9
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 1.7e-222 776.2 509 76.8
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 5.2e-219 764.6 516 76.9
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 1.2e-218 763.5 512 77.0
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 2.2e-217 759.2 513 75.8
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.7e-217 758.4 514 76.7
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.9e-217 758.1 518 74.9
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 1.8e-216 756.1 517 76.2
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 2.7e-215 752.3 516 73.6
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 4.3e-213 745.0 518 73.4
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 1.1e-211 740.3 509 75.4
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.4e-211 740.0 513 76.6
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.8e-211 739.6 511 75.0
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 7.5e-210 734.2 514 74.7
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 1.3e-209 733.4 517 72.9
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 2.9e-209 732.3 510 75.3
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 3.7e-209 731.9 505 73.9
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 3.7e-209 731.9 511 76.1
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 9.2e-208 727.2 518 73.6
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 7.8e-207 724.2 515 72.8
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.3e-206 723.4 522 70.9
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 5.0e-206 721.5 506 73.3
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 1.1e-205 720.3 506 73.9
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 1.5e-205 719.9 511 74.2
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 5.6e-205 718.0 505 73.7
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 1.6e-204 716.5 510 72.5
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 2.8e-204 715.7 513 72.7
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 6.8e-203 711.1 514 72.8
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 1.5e-202 709.9 511 73.0
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 9.9e-202 707.2 516 71.5
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 1.3e-201 706.8 512 72.5
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.9e-201 705.7 515 72.0
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 4.9e-201 704.9 512 71.3
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 6.0e-199 698.0 519 70.9
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 7.8e-199 697.6 516 70.9
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 1.3e-198 696.8 512 72.1
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 3.9e-198 695.3 518 69.9
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 3.9e-198 695.3 514 71.8
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 5.1e-198 694.9 517 71.8
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 1.9e-197 693.0 512 71.9
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 9.5e-197 690.6 519 71.1
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 1.2e-196 690.3 520 69.2
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 1.2e-196 690.3 519 70.9
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 3.6e-196 688.7 516 71.3
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 4.0e-195 685.3 518 71.6
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 4.0e-195 685.3 526 70.2
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 5.2e-195 684.9 510 71.8
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 5.2e-195 684.9 537 66.3
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 5.2e-195 684.9 519 70.5
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 2.0e-194 682.9 511 71.0
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 2.6e-194 682.6 512 71.9
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.6e-194 682.6 511 71.2
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 4.4e-194 681.8 512 69.5
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 9.9e-194 680.6 520 70.4
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.3e-193 680.2 510 71.0
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.9e-193 679.1 511 70.6
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 3.2e-192 675.6 508 70.7
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.2e-191 673.7 529 67.1
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.6e-191 673.3 518 70.1
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 2.7e-191 672.5 510 70.0
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 3.5e-191 672.2 522 68.8
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 6.0e-191 671.4 508 70.1
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 2.5e-189 666.0 515 68.9
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 5.6e-189 664.8 506 69.8
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 5.6e-189 664.8 517 67.3
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 7.3e-189 664.5 533 68.5
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 1.6e-188 663.3 518 68.9
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 8.1e-188 661.0 506 70.8
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 1.1e-187 660.6 506 70.8
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 1.4e-187 660.2 514 67.9
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 1.8e-187 659.8 516 69.4
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 4.0e-187 658.7 512 68.8
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 1.2e-186 657.1 508 70.9
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 1.2e-186 657.1 509 69.7
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 2.0e-186 656.4 508 70.9
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 2.6e-186 656.0 512 68.6
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 7.6e-186 654.4 510 70.2
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.8e-185 652.1 516 69.2
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 9.3e-184 647.5 521 66.0
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 9.0e-179 630.9 508 67.3
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 4.5e-178 628.6 513 66.7
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 7.6e-178 627.9 468 71.8
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 7.6e-178 627.9 527 63.8
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 8.4e-177 624.4 526 64.6
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 5.4e-176 621.7 530 64.5
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 1.6e-175 620.2 468 69.0
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 6.0e-175 618.2 513 64.1
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 7.9e-175 617.8 517 64.4
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 5.6e-173 611.7 528 63.8
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 7.4e-173 611.3 523 63.9
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.2e-167 594.0 522 63.2
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 7.9e-167 591.3 511 62.8
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 1.1e-163 580.9 526 61.4
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 2.4e-163 579.7 530 61.1
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.6e-162 576.2 536 61.2
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 4.2e-160 568.9 533 60.4
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 1.3e-158 563.9 457 66.1
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 2.2e-156 556.6 515 61.9
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.1e-147 527.7 526 57.2
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 1.3e-145 520.8 522 56.7
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 3.8e-145 519.2 522 56.9
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 7.9e-143 511.5 521 56.4
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 1.7e-140 503.8 491 58.0
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 3.6e-135 486.1 532 52.8
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 8.8e-134 481.5 511 56.2
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.3e-124 451.1 514 53.3
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 9.1e-123 444.9 529 50.7
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 5.9e-122 442.2 543 50.1
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 3.8e-121 439.5 305 71.5
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 1.4e-110 404.4 294 72.8
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.5e-109 401.0 515 46.4
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 1.4e-99 367.9 510 46.9
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 3.2e-91 340.1 576 41.0
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 4.6e-58 229.9 339 42.5
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 4.6e-58 229.9 284 48.6
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 1.0e-57 228.8 201 65.7
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 1.4e-43 181.8 277 43.0
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 4.7e-26 123.6 99 66.7
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 3.3e-24 117.5 454 28.2
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 5.7e-24 116.7 86 67.4
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 3.1e-22 110.9 485 25.2
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 7.7e-21 106.3 68 77.9
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 1.3e-15 89.0 72 55.6
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.8e-14 85.1 65 64.6
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 5.3e-14 83.6 63 61.9
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 2.0e-13 81.6 209 33.0
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.5e-08 65.5 81 53.1


User provided reference genes

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