Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc135.29 Carica papaya HOM05D015030 ORTHO05D010953 3.5e-111 404.8 187 100.0
Cpa.g.sc139.48 Carica papaya HOM05D015030 ORTHO05D010953 2.3e-33 146.4 105 66.7
Cpa.g.sc40.26 Carica papaya HOM05D015030 ORTHO05D010953 3.2e-27 125.9 77 72.7
Cpa.g.sc81.77 Carica papaya HOM05D015157 ORTHO05D011148 1.5e-21 107.1 114 43.0
Cpa.g.sc2716.1 Carica papaya HOM05D015030 ORTHO05D010953 2.0e-21 106.7 59 78.0
Cpa.g.sc33.93 Carica papaya HOM05D015030 ORTHO05D010953 2.0e-21 106.7 59 78.0
Cpa.g.c34877 Carica papaya HOM05D011316 ORTHO05D010953 3.3e-16 89.4 83 57.8
RcHm_v2.0_Chr5g0018821 Rosa chinensis HOM05D000003 ORTHO05D000022 5.8e-13 78.6 158 30.4
SGA_v2.0_scaffold147G36377 Striga asiatica HOM05D000003 ORTHO05D000022 4.1e-11 72.4 150 28.0
Thecc.06G025800 Theobroma cacao HOM05D000003 ORTHO05D000022 9.2e-11 71.2 150 27.3
COL.COLO4_14116 Corchorus olitorius HOM05D000003 ORTHO05D000004 3.5e-10 69.3 131 28.2
RcHm_v2.0_Chr4g0406871 Rosa chinensis HOM05D000003 ORTHO05D000004 3.5e-10 69.3 117 33.3
Cpa.g.sc3.204 Carica papaya HOM05D015030 ORTHO05D010953 6.0e-10 68.6 49 61.2
Manes.06G020101 Manihot esculenta HOM05D000003 ORTHO05D000004 6.0e-10 68.6 106 39.6
Atru.chr4.1146 Acer truncatum HOM05D000003 ORTHO05D000022 7.8e-10 68.2 153 28.1
Atru.chr7.713 Acer truncatum HOM05D000003 ORTHO05D000004 1.7e-09 67.0 157 29.3
CSS0048939 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.7e-09 67.0 116 28.4
PGR119G2417 Punica granatum HOM05D000003 ORTHO05D000004 5.1e-09 65.5 152 25.7
TPR.G16685 Trifolium pratense HOM05D013665 ORTHO05D012377 1.5e-08 63.9 101 29.7
Atru.chr12.2484 Acer truncatum HOM05D000003 ORTHO05D000022 2.5e-08 63.2 102 31.4
Atru.chr2.2708 Acer truncatum HOM05D000003 ORTHO05D000022 3.3e-08 62.8 102 30.4
Atru.chr2.1419 Acer truncatum HOM05D000003 ORTHO05D000022 7.3e-08 61.6 120 30.0
Thecc.01G193900 Theobroma cacao HOM05D015157 ORTHO05D011148 9.6e-08 61.2 101 32.7
CSS0041590 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 1.2e-07 60.8 121 28.1
Atru.chr1.776 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-07 60.5 156 26.3
CSS0032736 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 2.8e-07 59.7 121 28.1
Atru.chr5.2215 Acer truncatum HOM05D000003 ORTHO05D002259 3.6e-07 59.3 166 28.3
BolC8t47524H Brassica oleracea HOM05D000003 ORTHO05D000004 3.6e-07 59.3 128 31.2
Atru.chr11.1308 Acer truncatum HOM05D000003 ORTHO05D000022 6.2e-07 58.5 155 23.9
CSS0007439 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000022 6.2e-07 58.5 115 27.0
BolC4t22740H Brassica oleracea HOM05D000003 ORTHO05D001498 8.1e-07 58.2 98 33.7
Atru.chr13.1154 Acer truncatum HOM05D000003 ORTHO05D000004 1.1e-06 57.8 102 28.4
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 1.1e-06 57.8 127 26.8
BcaC04g21940 Brassica carinata HOM05D000003 ORTHO05D000004 1.1e-06 57.8 125 31.2
RcHm_v2.0_Chr2g0146161 Rosa chinensis HOM05D000003 ORTHO05D000022 1.4e-06 57.4 114 28.9
Prupe.4G161900 Prunus persica HOM05D000003 ORTHO05D000022 1.8e-06 57.0 103 31.1
Thecc.10G084500 Theobroma cacao HOM05D000003 ORTHO05D011148 1.8e-06 57.0 71 35.2
Atru.chr1.3365 Acer truncatum HOM05D000003 ORTHO05D000004 3.1e-06 56.2 121 28.9
Cpa.g.sc112.13 Carica papaya HOM05D011316 ORTHO05D010953 3.1e-06 56.2 31 74.2
Gohir.D04G052650 Gossypium hirsutum HOM05D031998 ORTHO05D011148 3.1e-06 56.2 104 29.8
BolC7t41032H Brassica oleracea HOM05D000003 ORTHO05D000004 5.2e-06 55.5 131 28.2
Lj3g0015119 Lotus japonicus HOM05D000003 ORTHO05D000022 6.8e-06 55.1 106 25.5
THA.LOC104799794 Tarenaya hassleriana HOM05D000003 ORTHO05D000004 6.8e-06 55.1 111 32.4
CARHR124520 Cardamine hirsuta HOM05D000003 ORTHO05D000022 8.9e-06 54.7 104 30.8
RcHm_v2.0_Chr6g0262791 Rosa chinensis HOM05D000003 ORTHO05D000022 8.9e-06 54.7 104 29.8


User provided reference genes

Program Settings