Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc132.70 Carica papaya HOM05D008132 ORTHO05D005763 1.2e-48 196.4 119 100.0
Cpa.g.sc132.73 Carica papaya HOM05D008132 ORTHO05D005763 1.2e-48 196.4 119 100.0
GSVIVG01030407001 Vitis vinifera HOM05D008132 ORTHO05D005763 1.4e-17 93.2 170 46.5
Thecc.01G186700 Theobroma cacao HOM05D008132 ORTHO05D005763 1.6e-16 89.7 132 50.8
QL08p029862 Quercus lobata HOM05D008132 ORTHO05D005763 1.4e-15 86.7 140 50.7
LjContig00357g0014262 Lotus japonicus HOM05D009657 ORTHO05D005763 8.8e-15 84.0 142 52.8
Actinidia09763 Actinidia chinensis HOM05D008132 ORTHO05D005763 1.1e-14 83.6 157 46.5
CiPaw.03G275800 Carya illinoinensis HOM05D052008 ORTHO05D005763 3.3e-14 82.0 115 49.6
arahy.Tifrunner.gnm1.ann1.5E44W3 Arachis hypogaea HOM05D008132 ORTHO05D005763 1.7e-13 79.7 119 52.9
Gorai.006G083000 Gossypium raimondii HOM05D008132 ORTHO05D005763 2.2e-13 79.3 132 55.3
Oeu022674.1 Olea europaea HOM05D008132 ORTHO05D005763 8.2e-13 77.4 133 52.6
EL10Ac9g22778 Beta vulgaris HOM05D008132 ORTHO05D005763 1.4e-12 76.6 135 54.1
Gohir.D07G195400 Gossypium hirsutum HOM05D008132 ORTHO05D005763 5.3e-12 74.7 134 57.5
Thecc.01G236900 Theobroma cacao HOM05D008132 ORTHO05D005763 5.3e-12 74.7 134 50.7
Dinv05855 Davidia involucrata HOM05D016168 ORTHO05D005763 6.9e-12 74.3 131 55.0
COL.COLO4_36679 Corchorus olitorius HOM05D008132 ORTHO05D005763 9.1e-12 73.9 126 57.9
Migut.G00657 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.2e-11 73.6 115 51.3
Migut.G01101 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.2e-11 73.6 115 51.3
Migut.O00629 Erythranthe guttata HOM05D008132 ORTHO05D005763 1.2e-11 73.6 115 51.3
Cpa.g.sc132.74 Carica papaya HOM05D008132 ORTHO05D005763 1.5e-11 73.2 37 81.1
C03p55470 Brassica napus HOM05D008158 ORTHO05D010323 5.9e-11 71.2 123 56.9
COL.COLO4_04943 Corchorus olitorius HOM05D008132 ORTHO05D005763 5.9e-11 71.2 127 52.8
Medtr5g084330 Medicago truncatula HOM05D009657 ORTHO05D005763 5.9e-11 71.2 136 50.0
Nn1g09274 Nelumbo nucifera HOM05D008132 ORTHO05D005763 5.9e-11 71.2 131 53.4
COL.COLO4_04214 Corchorus olitorius HOM05D008132 ORTHO05D005763 7.7e-11 70.9 142 52.1
COL.COLO4_04941 Corchorus olitorius HOM05D008132 ORTHO05D005763 7.7e-11 70.9 151 47.7
Peaxi162Scf00286g00820 Petunia axillaris HOM05D008132 ORTHO05D005763 2.2e-10 69.3 119 44.5
Sopen09g035650 Solanum pennellii HOM05D016138 ORTHO05D005763 2.2e-10 69.3 108 50.0
Nitab4.5_0000037g0280 Nicotiana tabacum HOM05D008132 ORTHO05D005763 2.9e-10 68.9 125 46.4
BcaB08g34503 Brassica carinata HOM05D008158 ORTHO05D010323 5.0e-10 68.2 126 53.2
A03p44640 Brassica napus HOM05D008158 ORTHO05D010323 5.0e-10 68.2 131 53.4
COL.COLO4_04942 Corchorus olitorius HOM05D008132 ORTHO05D005763 5.0e-10 68.2 135 53.3
Lalb_Chr04g0258791 Lupinus albus HOM05D021502 ORTHO05D005763 6.5e-10 67.8 120 39.2
Nn1g09275 Nelumbo nucifera HOM05D008132 ORTHO05D005763 6.5e-10 67.8 139 48.2
CANSAT56G4537 Cannabis sativa HOM05D008132 ORTHO05D005763 1.4e-09 66.6 125 52.8
Oeu022673.1 Olea europaea HOM05D008132 ORTHO05D005763 1.9e-09 66.2 161 46.6
BcaC01g03159 Brassica carinata HOM05D008158 ORTHO05D010323 3.2e-09 65.5 131 52.7
LjContig00357g0002258 Lotus japonicus HOM05D016758 ORTHO05D005763 4.2e-09 65.1 118 52.5
PGR142G4197 Punica granatum HOM05D008132 ORTHO05D005763 4.2e-09 65.1 124 50.8
ClCG02G002460 Citrullus lanatus HOM05D016168 ORTHO05D005763 7.2e-09 64.3 125 48.8
EL10Ac9g22777 Beta vulgaris HOM05D008132 ORTHO05D005763 9.4e-09 63.9 159 43.4
PGR042G2058 Punica granatum HOM05D008132 ORTHO05D005763 1.2e-08 63.5 131 50.4
arahy.Tifrunner.gnm1.ann1.4VA7BX Arachis hypogaea HOM05D064469 ORTHO05D005763 1.6e-08 63.2 107 51.4
Nitab4.5_0000037g0290 Nicotiana tabacum HOM05D008132 ORTHO05D005763 1.6e-08 63.2 119 39.5
Sopen09g035750 Solanum pennellii HOM05D012878 ORTHO05D005763 1.6e-08 63.2 144 45.1
arahy.Tifrunner.gnm1.ann1.V70XEM Arachis hypogaea HOM05D064469 ORTHO05D005763 2.1e-08 62.8 107 52.3
Cc03_g08950 Coffea canephora HOM05D008132 ORTHO05D005763 2.1e-08 62.8 138 52.2
Migut.G01096 Erythranthe guttata HOM05D008132 ORTHO05D005763 2.1e-08 62.8 135 48.9
MSTRG.9648 Avicennia marina HOM05D008132 ORTHO05D005763 2.7e-08 62.4 123 48.0
Gohir.A07G085700 Gossypium hirsutum HOM05D008132 ORTHO05D005763 2.7e-08 62.4 120 50.8
Glyma.14G051900 Glycine max HOM05D016758 ORTHO05D005763 4.7e-08 61.6 136 47.1
THA.LOC104826607 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 4.7e-08 61.6 127 53.5
Ciclev10017145m.g Citrus clementina HOM05D016168 ORTHO05D005763 7.9e-08 60.8 135 46.7
Gohir.A07G188800 Gossypium hirsutum HOM05D008132 ORTHO05D005763 7.9e-08 60.8 144 48.6
Phvul.008G216600 Phaseolus vulgaris HOM05D016758 ORTHO05D005763 1.4e-07 60.1 141 45.4
Glyma.14G052000 Glycine max HOM05D016758 ORTHO05D005763 1.8e-07 59.7 139 48.2
RcHm_v2.0_Chr2g0157371 Rosa chinensis HOM05D019965 ORTHO05D005763 1.8e-07 59.7 116 47.4
PGR042G0640 Punica granatum HOM05D008132 ORTHO05D005763 2.3e-07 59.3 119 47.9
AT2G05540 Arabidopsis thaliana HOM05D008158 ORTHO05D010323 3.0e-07 58.9 133 49.6
PSO151G0043 Papaver somniferum HOM05D011802 ORTHO05D014248 3.0e-07 58.9 110 52.7
PGR042G3008 Punica granatum HOM05D008132 ORTHO05D014248 3.0e-07 58.9 123 43.9
CAN.G2020.3 Capsicum annuum HOM05D012878 ORTHO05D005763 3.9e-07 58.5 137 38.0
CARHR103240 Cardamine hirsuta HOM05D008158 ORTHO05D010323 5.1e-07 58.2 113 55.8
Cc00_g35190 Coffea canephora HOM05D008132 ORTHO05D005763 5.1e-07 58.2 74 62.2
MSTRG.9649 Avicennia marina HOM05D008132 ORTHO05D005763 6.7e-07 57.8 114 55.3
Migut.G00827 Erythranthe guttata HOM05D008132 ORTHO05D005763 6.7e-07 57.8 147 48.3
Migut.G01155 Erythranthe guttata HOM05D008132 ORTHO05D005763 6.7e-07 57.8 144 49.3
PSO339G4592 Papaver somniferum HOM05D011802 ORTHO05D014248 6.7e-07 57.8 111 45.9
Solyc09g092720.3 Solanum lycopersicum HOM05D016138 ORTHO05D005763 8.8e-07 57.4 109 45.9
CsaV3_7G002960 Cucumis sativus L. HOM05D016168 ORTHO05D005763 1.1e-06 57.0 127 46.5
Thhalv10002728m.g Eutrema salsugineum HOM05D008158 ORTHO05D010323 1.5e-06 56.6 119 52.1
MELO3C018880.2 Cucumis melo HOM05D016168 ORTHO05D005763 2.0e-06 56.2 126 44.4
PSO339G5395 Papaver somniferum HOM05D011802 ORTHO05D014248 2.0e-06 56.2 122 50.8
CsaV3_7G002950 Cucumis sativus L. HOM05D016168 ORTHO05D005763 2.6e-06 55.8 57 64.9
MD09G1118600 Malus domestica HOM05D008132 ORTHO05D005763 2.6e-06 55.8 127 49.6
PSO151G0069 Papaver somniferum HOM05D011802 ORTHO05D014248 3.3e-06 55.5 122 46.7
VMungo0647G2202 Vigna mungo HOM05D016758 ORTHO05D005763 3.3e-06 55.5 141 48.2
CiPaw.11G195800 Carya illinoinensis HOM05D012272 ORTHO05D013564 4.4e-06 55.1 55 60.0
Peaxi162Scf00286g00087 Petunia axillaris HOM05D012878 ORTHO05D005763 4.4e-06 55.1 146 43.8
MD09G1118100 Malus domestica HOM05D008132 ORTHO05D005763 5.7e-06 54.7 127 48.8
THA.LOC104815348 Tarenaya hassleriana HOM05D008158 ORTHO05D010323 7.4e-06 54.3 114 49.1
BraA03t13597Z Brassica rapa HOM05D008158 ORTHO05D010323 9.7e-06 53.9 39 66.7


User provided reference genes

Program Settings