Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc132.32 Carica papaya HOM05D000172 ORTHO05D008216 2.8e-94 348.6 174 100.0
Duzib138G0791 Durio zibethinus HOM05D000172 ORTHO05D000781 8.2e-70 267.3 165 76.4
Thecc.01G183500 Theobroma cacao HOM05D000172 ORTHO05D008216 2.9e-67 258.8 155 78.7
Gohir.A07G168450 Gossypium hirsutum HOM05D000172 ORTHO05D008216 1.8e-64 249.6 155 76.1
Gohir.D07G174800 Gossypium hirsutum HOM05D000172 ORTHO05D008216 2.5e-63 245.7 155 74.8
Gorai.001G195500 Gossypium raimondii HOM05D000172 ORTHO05D008216 7.4e-63 244.2 155 74.8
Atru.chr6.3270 Acer truncatum HOM05D000172 ORTHO05D008216 1.7e-62 243.0 156 76.9
Atru.chr6.3269 Acer truncatum HOM05D000172 ORTHO05D008216 2.2e-62 242.7 156 76.3
CANSAT78G2170 Cannabis sativa HOM05D000172 ORTHO05D000781 2.8e-62 242.3 165 71.5
TAR624G1331 Trochodendron aralioides HOM05D000172 ORTHO05D008216 2.8e-62 242.3 155 74.2
Eucgr.K00733 Eucalyptus grandis HOM05D000172 ORTHO05D008216 4.8e-62 241.5 164 75.0
TWI36G0853 Tripterygium wilfordii HOM05D000172 ORTHO05D000781 1.8e-61 239.6 165 69.7
Manes.13G066180 Manihot esculenta HOM05D000172 ORTHO05D008216 5.3e-61 238.0 154 72.7
Cfa014307 Carpinus fangiana HOM05D000172 ORTHO05D008216 4.5e-60 235.0 156 71.8
PGR142G2841 Punica granatum HOM05D000172 ORTHO05D008216 5.9e-60 234.6 153 79.1
Ciclev10016727m.g Citrus clementina HOM05D000172 ORTHO05D008216 1.7e-59 233.0 155 72.3
Nn1g03358 Nelumbo nucifera HOM05D000172 ORTHO05D008216 2.9e-59 232.3 155 70.3
Sabra14G0121300 Salix brachista HOM05D000172 ORTHO05D008216 6.5e-59 231.1 154 69.5
COL.COLO4_06741 Corchorus olitorius HOM05D000172 ORTHO05D008216 1.1e-58 230.3 146 70.5
Prupe.3G209000 Prunus persica HOM05D000172 ORTHO05D008216 4.2e-58 228.4 159 70.4
Actinidia13731 Actinidia chinensis HOM05D000172 ORTHO05D008216 5.5e-58 228.0 156 66.7
CSS0028035 Camellia sinensis var. sinensis HOM05D000172 ORTHO05D000781 5.5e-58 228.0 156 69.2
Potri.014G159600 Populus trichocarpa HOM05D000172 ORTHO05D008216 2.1e-57 226.1 155 69.0
THA.LOC104826130 Tarenaya hassleriana HOM05D000172 ORTHO05D008216 2.7e-57 225.7 156 69.9
GSVIVG01030516001 Vitis vinifera HOM05D000172 ORTHO05D008216 6.1e-57 224.6 156 70.5
MD17G1107300 Malus domestica HOM05D000172 ORTHO05D008216 6.7e-56 221.1 160 68.8
Sed0000051 Sechium edule HOM05D000172 ORTHO05D008216 8.8e-56 220.7 164 64.6
MD09G1115500 Malus domestica HOM05D000172 ORTHO05D000781 1.1e-55 220.3 163 67.5
MBI16_g26181_MAGBIO Magnolia biondii HOM05D000172 ORTHO05D008216 1.5e-55 219.9 161 67.1
Nitab4.5_0000130g0110 Nicotiana tabacum HOM05D000172 ORTHO05D008216 7.4e-55 217.6 156 66.7
Hma1.2p1_2406F.1_g321460 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 2.8e-54 215.7 154 66.9
Hma1.2p1_0405F.1_g145530 Hydrangea macrophylla HOM05D000172 ORTHO05D008216 4.8e-54 214.9 154 66.9
Peaxi162Scf01333g00137 Petunia axillaris HOM05D000172 ORTHO05D008216 4.8e-54 214.9 156 66.0
Sed0027341 Sechium edule HOM05D000172 ORTHO05D008216 4.8e-54 214.9 164 62.8
arahy.Tifrunner.gnm1.ann1.EDY71B Arachis hypogaea HOM05D000172 ORTHO05D008216 8.2e-54 214.2 164 64.0
Thhalv10008833m.g Eutrema salsugineum HOM05D000172 ORTHO05D008216 1.8e-53 213.0 160 65.6
AL1G14720 Arabidopsis lyrata HOM05D000172 ORTHO05D008216 6.9e-53 211.1 155 67.1
Carub.0001s0423 Capsella rubella HOM05D000172 ORTHO05D008216 9.1e-53 210.7 155 67.1
VMungo0647G0578 Vigna mungo HOM05D000172 ORTHO05D008216 9.1e-53 210.7 165 66.7
MSTRG.14128 Avicennia marina HOM05D000172 ORTHO05D008216 1.2e-52 210.3 154 66.9
MELO3C019724.2 Cucumis melo HOM05D000172 ORTHO05D008216 1.2e-52 210.3 163 62.0
Psat2g026560 Pisum sativum HOM05D000172 ORTHO05D008216 1.5e-52 209.9 166 63.3
Glyma.02G267200 Glycine max HOM05D000172 ORTHO05D008216 2.0e-52 209.5 164 66.5
Nitab4.5_0010117g0030 Nicotiana tabacum HOM05D000172 ORTHO05D008216 4.5e-52 208.4 156 64.7
LjContig00029g0008644 Lotus japonicus HOM05D000172 ORTHO05D008216 7.7e-52 207.6 156 66.0
ClCG02G018130 Citrullus lanatus HOM05D000172 ORTHO05D008216 1.0e-51 207.2 163 61.3
Aqoxy1G04174 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 1.3e-51 206.8 159 63.5
CsaV3_6G015520 Cucumis sativus L. HOM05D000172 ORTHO05D008216 1.3e-51 206.8 163 62.0
Sp1g03860 Schrenkiella parvula HOM05D000172 ORTHO05D008216 1.3e-51 206.8 154 64.9
Sc12g0002040 Simmondsia chinensis HOM05D000172 ORTHO05D008216 1.7e-51 206.5 156 64.1
PGSC0003DMG400000660 Solanum tuberosum HOM05D000172 ORTHO05D008216 2.2e-51 206.1 156 64.1
CAN.G784.10 Capsicum annuum HOM05D000172 ORTHO05D008216 2.9e-51 205.7 156 64.7
Lalb_Chr17g0347191 Lupinus albus HOM05D000172 ORTHO05D008216 3.8e-51 205.3 156 66.7
Sopen07g024820 Solanum pennellii HOM05D000172 ORTHO05D008216 3.8e-51 205.3 156 64.1
Phvul.008G214900 Phaseolus vulgaris HOM05D000172 ORTHO05D008216 6.5e-51 204.5 165 65.5
BraA08t35564Z Brassica rapa HOM05D001534 ORTHO05D003503 5.5e-50 201.4 156 62.8
CDE04G1581 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 5.5e-50 201.4 149 63.8
BcaB03g13463 Brassica carinata HOM05D000172 ORTHO05D008216 7.2e-50 201.1 156 62.2
BcaC07g36869 Brassica carinata HOM05D001534 ORTHO05D003503 9.4e-50 200.7 156 62.2
A08p36620 Brassica napus HOM05D001534 ORTHO05D003503 9.4e-50 200.7 156 62.2
C08p01620 Brassica napus HOM05D001534 ORTHO05D003503 9.4e-50 200.7 156 62.2
BolC8t46965H Brassica oleracea HOM05D001534 ORTHO05D003503 9.4e-50 200.7 156 62.2
Rhsim06G0168800 Rhododendron simsii HOM05D000172 ORTHO05D008216 9.4e-50 200.7 148 64.9
CARHR004400 Cardamine hirsuta HOM05D000172 ORTHO05D008216 8.0e-49 197.6 155 63.9
RcHm_v2.0_Chr2g0157891 Rosa chinensis HOM05D000172 ORTHO05D008216 1.4e-48 196.8 159 57.9
SGA_v2.0_scaffold49G18358 Striga asiatica HOM05D000172 ORTHO05D008216 1.8e-48 196.4 154 61.7
EL10Ac9g22821 Beta vulgaris HOM05D000172 ORTHO05D008216 2.3e-48 196.1 174 59.2
TPR.G25655 Trifolium pratense HOM05D000172 ORTHO05D008216 3.9e-48 195.3 156 62.8
FvH4_6g41990 Fragaria vesca HOM05D000172 ORTHO05D008216 5.2e-48 194.9 160 58.8
SEGI_13182 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 5.2e-48 194.9 158 61.4
Lsat_1_v5_gn_7_94941 Lactuca sativa HOM05D000172 ORTHO05D008216 8.8e-48 194.1 163 61.3
FAN09G4057 Fragaria x ananassa HOM05D000172 ORTHO05D000781 1.5e-47 193.4 159 58.5
FAN14G3302 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.5e-47 193.4 160 58.1
FAN14G3681 Fragaria x ananassa HOM05D000172 ORTHO05D008216 1.5e-47 193.4 160 58.1
HanXRQChr04g0126831 Helianthus annuus HOM05D000172 ORTHO05D008216 1.5e-47 193.4 156 60.3
FAN02G3472 Fragaria x ananassa HOM05D000172 ORTHO05D008216 3.3e-47 192.2 161 60.9
FAN05G3852 Fragaria x ananassa HOM05D000172 ORTHO05D008216 7.4e-47 191.0 159 57.2
Medtr5g084980 Medicago truncatula HOM05D000172 ORTHO05D008216 9.7e-47 190.7 155 63.9
HPP92_000219 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.2e-46 189.5 167 58.1
HPP92_000210 Vanilla planifolia HOM05D000172 ORTHO05D008216 2.8e-46 189.1 167 58.1
PSO832G3827 Papaver somniferum HOM05D000172 ORTHO05D008216 4.8e-46 188.3 155 60.0
PSO210G7646 Papaver somniferum HOM05D000172 ORTHO05D008216 1.1e-45 187.2 155 60.0
Cc05_g02620 Coffea canephora HOM05D000172 ORTHO05D008216 1.4e-45 186.8 158 60.1
SalBow1G7277 Salvia bowleyana HOM05D000172 ORTHO05D008216 1.8e-45 186.4 162 58.0
Dinv39759 Davidia involucrata HOM05D000172 ORTHO05D008216 8.5e-43 177.6 123 69.1
Migut.H01248 Erythranthe guttata HOM05D000172 ORTHO05D008216 3.2e-42 175.6 154 57.1
Os04g0669100 Oryza sativa ssp. japonica HOM05D000172 ORTHO05D008216 9.4e-42 174.1 157 56.1
unitig_578.g16772 Utricularia gibba HOM05D000172 ORTHO05D008216 5.2e-40 168.3 156 55.1
Solyc07g049470.4 Solanum lycopersicum HOM05D000172 ORTHO05D008216 6.7e-40 167.9 117 69.2
Zm00001eb066900 Zea mays HOM05D000172 ORTHO05D008216 2.6e-39 166.0 138 58.0
Zm00001eb433230 Zea mays HOM05D000172 ORTHO05D008216 3.7e-38 162.2 153 51.6
ECA236G1458 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.4e-37 159.5 152 52.6
ATR1128G110 Amborella trichopoda HOM05D000172 ORTHO05D008216 5.9e-36 154.8 122 63.1
Aa31LG1G19790 Aethionema arabicum HOM05D000172 ORTHO05D008216 2.9e-35 152.5 177 49.7
QL93p0185_0050 Quercus lobata HOM05D000172 ORTHO05D008216 8.5e-35 151.0 124 60.5
QL08p030202 Quercus lobata HOM05D000172 ORTHO05D008216 2.5e-34 149.4 124 60.5
vmacro12154 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 2.7e-33 146.0 103 68.0
SalBow1G5012 Salvia bowleyana HOM05D000172 ORTHO05D008216 4.0e-32 142.1 154 48.7
AUR62015120 Chenopodium quinoa HOM05D000172 ORTHO05D008216 8.8e-32 141.0 122 61.5
DCAR_019254 Daucus carota HOM05D000172 ORTHO05D008216 8.3e-30 134.4 107 57.9
Glyma.14G050300 Glycine max HOM05D000172 ORTHO05D008216 1.4e-29 133.7 104 61.5
AT1G04985 Arabidopsis thaliana HOM05D000172 ORTHO05D008216 9.1e-29 131.0 93 62.4
arahy.Tifrunner.gnm1.ann1.YBUA9J Arachis hypogaea HOM05D000172 ORTHO05D008216 1.6e-28 130.2 97 64.9
arahy.Tifrunner.gnm1.ann1.Z24BKS Arachis hypogaea HOM05D000172 ORTHO05D008216 5.0e-27 125.2 102 62.7
CiPaw.03G154000 Carya illinoinensis HOM05D000172 ORTHO05D008216 5.0e-27 125.2 126 52.4
arahy.Tifrunner.gnm1.ann1.2252MW Arachis hypogaea HOM05D000172 ORTHO05D008216 6.5e-27 124.8 101 61.4
arahy.Tifrunner.gnm1.ann1.YE9ADV Arachis hypogaea HOM05D000172 ORTHO05D008216 3.4e-23 112.5 83 67.5
DCAR_021133 Daucus carota HOM05D000172 ORTHO05D008216 7.5e-23 111.3 88 63.6
Pp3c2_22540 Physcomitrium patens HOM05D000172 ORTHO05D008216 4.9e-22 108.6 131 42.7
AagrBONN_evm.TU.Sc2ySwM_228.5805 Anthoceros agrestis HOM05D000172 ORTHO05D008216 1.1e-21 107.5 105 50.5
Aqoxy1G04172 Aquilegia oxysepala HOM05D000172 ORTHO05D008216 4.1e-21 105.5 74 63.5
arahy.Tifrunner.gnm1.ann1.R9GX0H Arachis hypogaea HOM05D000172 ORTHO05D008216 9.2e-21 104.4 87 59.8
DCAR_021132 Daucus carota HOM05D000172 ORTHO05D008216 1.2e-20 104.0 71 62.0
CDE07G1564 Ceratophyllum demersum HOM05D000172 ORTHO05D008216 2.0e-20 103.2 83 61.4
Haze_12755 Corylus avellana HOM05D000172 ORTHO05D008216 1.6e-17 93.6 126 42.1
arahy.Tifrunner.gnm1.ann1.J9YZDG Arachis hypogaea HOM05D000172 ORTHO05D008216 2.8e-17 92.8 87 55.2
SEGI_22849 Sequoiadendron giganteum HOM05D000172 ORTHO05D008216 2.0e-15 86.7 63 68.3
SMO111G0036 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.4e-15 85.9 117 39.3
SMO358G0556 Selaginella moellendorffii HOM05D000172 ORTHO05D008216 3.4e-15 85.9 117 39.3
CBR_g23765 Chara braunii HOM05D000172 ORTHO05D008216 2.9e-14 82.8 106 41.5
Oeu003064.1 Olea europaea HOM05D000172 ORTHO05D008216 2.9e-14 82.8 68 63.2
arahy.Tifrunner.gnm1.ann1.7XK0ZA Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-11 73.9 68 51.5
arahy.Tifrunner.gnm1.ann1.J7SF2C Arachis hypogaea HOM05D000172 ORTHO05D008216 1.3e-11 73.9 64 54.7
arahy.Tifrunner.gnm1.ann1.UD09X1 Arachis hypogaea HOM05D000172 ORTHO05D008216 3.0e-11 72.8 108 40.7
arahy.Tifrunner.gnm1.ann1.971VLJ Arachis hypogaea HOM05D000172 ORTHO05D008216 3.9e-11 72.4 68 50.0
DCAR_021134 Daucus carota HOM05D000172 ORTHO05D008216 1.9e-10 70.1 57 63.2
arahy.Tifrunner.gnm1.ann1.XV84RB Arachis hypogaea HOM05D000172 ORTHO05D008216 9.5e-10 67.8 64 51.6
vmacro12152 Vaccinium macrocarpon HOM05D000172 ORTHO05D008216 1.2e-09 67.4 36 72.2
Hund04586 Selenicereus undatus HOM05D035355 ORTHO05D008216 9.8e-07 57.8 105 36.2
Hund04588 Selenicereus undatus HOM05D035355 ORTHO05D008216 9.8e-07 57.8 105 36.2


User provided reference genes

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