Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc132.19 Carica papaya HOM05D003996 ORTHO05D004665 4.7e-230 800.8 401 100.0
Gohir.D07G175200 Gossypium hirsutum HOM05D003996 ORTHO05D004665 1.3e-94 350.9 297 63.3
Gorai.001G196200 Gossypium raimondii HOM05D003996 ORTHO05D004665 2.2e-94 350.1 297 63.3
Gohir.A07G168800 Gossypium hirsutum HOM05D003996 ORTHO05D004665 5.4e-93 345.5 297 62.6
Thecc.01G181600 Theobroma cacao HOM05D003996 ORTHO05D004665 4.3e-90 335.9 334 58.1
Dinv39747 Davidia involucrata HOM05D003996 ORTHO05D004665 6.2e-89 332.0 302 60.9
Duzib138G0037 Durio zibethinus HOM05D003996 ORTHO05D004665 1.1e-88 331.3 334 56.3
Duzib211G0403 Durio zibethinus HOM05D003996 ORTHO05D004665 3.1e-88 329.7 337 56.7
Sabra14G0120200 Salix brachista HOM05D003996 ORTHO05D004665 2.6e-87 326.6 294 59.9
Ciclev10014490m.g Citrus clementina HOM05D003996 ORTHO05D004665 2.2e-86 323.6 292 61.0
Dinv08722 Davidia involucrata HOM05D003996 ORTHO05D004665 6.4e-86 322.0 302 59.6
Potri.002G224900 Populus trichocarpa HOM05D003996 ORTHO05D004665 6.4e-86 322.0 297 60.3
TWI75G1163 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 1.1e-85 321.2 299 60.2
Potri.014G158200 Populus trichocarpa HOM05D003996 ORTHO05D004665 4.2e-85 319.3 294 59.2
CANSAT64G2545 Cannabis sativa HOM05D003996 ORTHO05D004665 1.6e-84 317.4 279 62.4
Gorai.001G095400 Gossypium raimondii HOM05D003996 ORTHO05D004665 6.7e-83 312.0 299 59.5
Gohir.A07G082500 Gossypium hirsutum HOM05D003996 ORTHO05D004665 3.3e-82 309.7 303 58.7
Gohir.D07G089000 Gossypium hirsutum HOM05D003996 ORTHO05D004665 7.4e-82 308.5 297 59.3
Atru.chr6.3252 Acer truncatum HOM05D003996 ORTHO05D004665 2.8e-81 306.6 298 57.4
GSVIVG01030501001 Vitis vinifera HOM05D003996 ORTHO05D004665 2.8e-81 306.6 299 58.9
Manes.12G069800 Manihot esculenta HOM05D003996 ORTHO05D004665 4.8e-81 305.8 297 56.9
COL.COLO4_21870 Corchorus olitorius HOM05D003996 ORTHO05D004665 1.1e-80 304.7 211 73.5
TAR626G1560 Trochodendron aralioides HOM05D003996 ORTHO05D004665 2.6e-79 300.1 298 56.4
Hma1.2p1_0177F.1_g078040 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 4.5e-79 299.3 303 56.4
Prupe.3G210900 Prunus persica HOM05D003996 ORTHO05D004665 1.7e-78 297.4 302 57.6
TWI36G0149 Tripterygium wilfordii HOM05D003996 ORTHO05D004665 2.9e-78 296.6 287 59.6
THA.LOC104801005 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 4.9e-78 295.8 298 56.0
FAN14G1081 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.9e-77 293.9 295 56.3
Glyma.13G026700 Glycine max HOM05D003996 ORTHO05D004665 7.1e-77 292.0 258 60.9
MD09G1113700 Malus domestica HOM05D003996 ORTHO05D004665 7.1e-77 292.0 298 56.7
FAN05G2256 Fragaria x ananassa HOM05D003996 ORTHO05D004665 9.3e-77 291.6 294 56.1
RcHm_v2.0_Chr2g0158131 Rosa chinensis HOM05D003996 ORTHO05D004665 9.3e-77 291.6 292 56.2
FvH4_6g42290 Fragaria vesca HOM05D003996 ORTHO05D004665 1.6e-76 290.8 295 55.9
THA.LOC104826134 Tarenaya hassleriana HOM05D003996 ORTHO05D004665 2.1e-76 290.4 294 55.4
FAN02G1294 Fragaria x ananassa HOM05D003996 ORTHO05D004665 2.7e-76 290.0 295 55.6
MD17G1103800 Malus domestica HOM05D003996 ORTHO05D004665 4.6e-76 289.3 298 56.0
vmacro09358 Vaccinium macrocarpon HOM05D003996 ORTHO05D004665 7.9e-76 288.5 299 53.5
AL4G28490 Arabidopsis lyrata HOM05D003996 ORTHO05D004665 1.0e-75 288.1 332 50.0
BolC3t14538H Brassica oleracea HOM05D003996 ORTHO05D004665 1.0e-75 288.1 317 50.5
Lalb_Chr18g0049761 Lupinus albus HOM05D003996 ORTHO05D004665 1.0e-75 288.1 259 60.6
Thhalv10016338m.g Eutrema salsugineum HOM05D003996 ORTHO05D004665 1.3e-75 287.7 322 51.2
Sp4g15330 Schrenkiella parvula HOM05D003996 ORTHO05D004665 1.8e-75 287.3 331 49.8
BcaC01g05877 Brassica carinata HOM05D003996 ORTHO05D004665 2.3e-75 287.0 322 50.3
PGR142G3363 Punica granatum HOM05D003996 ORTHO05D004665 2.3e-75 287.0 296 53.0
Glyma.20G056800 Glycine max HOM05D003996 ORTHO05D004665 3.9e-75 286.2 259 60.2
C03p21510 Brassica napus HOM05D003996 ORTHO05D004665 6.7e-75 285.4 322 50.0
Cc05_g02970 Coffea canephora HOM05D003996 ORTHO05D004665 1.9e-74 283.9 290 54.8
Eucgr.K00757 Eucalyptus grandis HOM05D003996 ORTHO05D004665 1.9e-74 283.9 210 69.0
A03p18420 Brassica napus HOM05D003996 ORTHO05D004665 3.3e-74 283.1 305 52.1
Ca_16283_v3 Cicer arietinum L. HOM05D003996 ORTHO05D004665 3.3e-74 283.1 259 59.5
CiPaw.03G155500 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.3e-74 282.7 210 69.0
Phvul.006G012800 Phaseolus vulgaris HOM05D003996 ORTHO05D004665 5.7e-74 282.3 270 58.9
FAN09G4790 Fragaria x ananassa HOM05D003996 ORTHO05D004665 1.6e-73 280.8 301 54.2
Carub.0004s1441 Capsella rubella HOM05D003996 ORTHO05D004665 2.8e-73 280.0 332 48.2
QL08p030755 Quercus lobata HOM05D003996 ORTHO05D004665 2.8e-73 280.0 293 55.6
AT2G32970 Arabidopsis thaliana HOM05D003996 ORTHO05D004665 6.3e-73 278.9 329 48.9
ClCG02G018060 Citrullus lanatus HOM05D003996 ORTHO05D004665 6.3e-73 278.9 213 66.2
PGSC0003DMG400000690 Solanum tuberosum HOM05D003996 ORTHO05D004665 8.2e-73 278.5 290 54.1
Sed0004670 Sechium edule HOM05D003996 ORTHO05D004665 1.1e-72 278.1 254 59.1
Solyc07g049350.3 Solanum lycopersicum HOM05D003996 ORTHO05D004665 2.4e-72 276.9 297 53.5
HanXRQChr16g0506421 Helianthus annuus HOM05D003996 ORTHO05D004665 3.1e-72 276.6 307 51.8
Lalb_Chr15g0080851 Lupinus albus HOM05D003996 ORTHO05D004665 3.1e-72 276.6 267 56.6
Sopen07g024690 Solanum pennellii HOM05D003996 ORTHO05D004665 3.1e-72 276.6 290 54.5
CARHR126920 Cardamine hirsuta HOM05D003996 ORTHO05D004665 9.0e-72 275.0 301 51.2
DCAR_021140 Daucus carota HOM05D003996 ORTHO05D004665 1.2e-71 274.6 264 54.9
PSO210G1396 Papaver somniferum HOM05D003996 ORTHO05D004665 1.2e-71 274.6 291 55.0
Migut.H01245 Erythranthe guttata HOM05D003996 ORTHO05D004665 2.0e-71 273.9 314 50.6
Oeu046908.1 Olea europaea HOM05D003996 ORTHO05D004665 2.0e-71 273.9 297 52.2
Lj6g0017826 Lotus japonicus HOM05D003996 ORTHO05D004665 2.6e-71 273.5 294 54.1
BcaB01g03955 Brassica carinata HOM05D003996 ORTHO05D004665 5.9e-71 272.3 320 48.4
EL10Ac6g13970 Beta vulgaris HOM05D003996 ORTHO05D004665 1.3e-70 271.2 301 52.2
DCAR_012922 Daucus carota HOM05D003996 ORTHO05D004665 1.3e-70 271.2 288 53.5
TPR.G29036 Trifolium pratense HOM05D003996 ORTHO05D004665 1.7e-70 270.8 266 56.4
PSO832G2142 Papaver somniferum HOM05D003996 ORTHO05D004665 2.9e-70 270.0 291 54.0
Rhsim04G0050600 Rhododendron simsii HOM05D003996 ORTHO05D004665 2.9e-70 270.0 280 53.9
arahy.Tifrunner.gnm1.ann1.LM4IV6 Arachis hypogaea HOM05D003996 ORTHO05D004665 3.8e-70 269.6 260 56.9
MSTRG.14132 Avicennia marina HOM05D003996 ORTHO05D004665 5.0e-70 269.2 287 52.3
AUR62032475 Chenopodium quinoa HOM05D003996 ORTHO05D004665 5.0e-70 269.2 309 51.8
Hund15359 Selenicereus undatus HOM05D003996 ORTHO05D004665 8.5e-70 268.5 217 65.4
MELO3C019738.2 Cucumis melo HOM05D003996 ORTHO05D004665 1.9e-69 267.3 213 63.4
Aqoxy1G02929 Aquilegia oxysepala HOM05D003996 ORTHO05D004665 2.5e-69 266.9 297 51.9
Sabra02G0172000 Salix brachista HOM05D003996 ORTHO05D004665 3.2e-69 266.5 295 54.9
Psat5g111680 Pisum sativum HOM05D003996 ORTHO05D004665 4.2e-69 266.2 265 57.0
Nitab4.5_0008863g0010 Nicotiana tabacum HOM05D003996 ORTHO05D004665 5.5e-69 265.8 297 52.2
MBI16_g26185_MAGBIO Magnolia biondii HOM05D003996 ORTHO05D004665 9.3e-69 265.0 298 52.0
Aa31LG5G4630 Aethionema arabicum HOM05D003996 ORTHO05D004665 1.2e-68 264.6 299 50.2
CsaV3_6G015350 Cucumis sativus L. HOM05D003996 ORTHO05D004665 1.3e-67 261.2 213 62.0
Medtr3g080400 Medicago truncatula HOM05D003996 ORTHO05D004665 5.1e-67 259.2 263 55.1
VMungo0540G1114 Vigna mungo HOM05D003996 ORTHO05D004665 1.1e-66 258.1 240 57.9
SHI10040 Sapria himalayana HOM05D003996 ORTHO05D000023 7.4e-66 255.4 213 62.4
HanXRQChr10g0310161 Helianthus annuus HOM05D003996 ORTHO05D004665 1.3e-65 254.6 275 53.5
ECA236G3366 Erigeron canadensis HOM05D003996 ORTHO05D004665 2.2e-65 253.8 303 50.2
Hma1.2p1_2319F.1_g319820 Hydrangea macrophylla HOM05D003996 ORTHO05D004665 4.1e-64 249.6 295 51.2
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.5e-63 247.7 210 62.4
Lsat_1_v5_gn_7_95060 Lactuca sativa HOM05D003996 ORTHO05D004665 2.0e-63 247.3 199 61.8
Ah.03g136730 Amaranthus hybridus HOM05D003996 ORTHO05D004665 2.6e-63 246.9 293 50.9
Peaxi162Scf00921g00252 Petunia axillaris HOM05D003996 ORTHO05D004665 5.9e-63 245.7 259 53.7
arahy.Tifrunner.gnm1.ann1.ZWYX82 Arachis hypogaea HOM05D003996 ORTHO05D004665 7.7e-63 245.4 249 55.0
Migut.M00422 Erythranthe guttata HOM05D003996 ORTHO05D004665 7.7e-63 245.4 208 61.5
PSO675G0796 Papaver somniferum HOM05D003996 ORTHO05D004665 2.2e-62 243.8 293 51.9
CAN.G1493.1 Capsicum annuum HOM05D003996 ORTHO05D004665 2.9e-62 243.4 286 51.4
Nn1g03381 Nelumbo nucifera HOM05D003996 ORTHO05D004665 5.0e-62 242.7 301 48.8
PSO541G1393 Papaver somniferum HOM05D003996 ORTHO05D004665 5.0e-62 242.7 293 50.2
Lsat_1_v5_gn_5_124380 Lactuca sativa HOM05D003996 ORTHO05D004665 6.5e-62 242.3 273 53.1
Lj8A129T88 Lonicera japonica HOM05D003996 ORTHO05D004665 3.2e-61 240.0 288 51.4
AUR62040130 Chenopodium quinoa HOM05D003996 ORTHO05D004665 9.4e-61 238.4 281 51.2
Zm00001eb256350 Zea mays HOM05D003996 ORTHO05D004665 4.6e-60 236.1 275 48.4
Nitab4.5_0000482g0250 Nicotiana tabacum HOM05D003996 ORTHO05D004665 6.1e-60 235.7 284 49.6
BcaC02g11363 Brassica carinata HOM05D003996 ORTHO05D004665 3.9e-59 233.0 319 44.8
C04p16550 Brassica napus HOM05D003996 ORTHO05D004665 3.9e-59 233.0 319 44.8
SGA_v2.0_scaffold159G37554 Striga asiatica HOM05D003996 ORTHO05D004665 1.1e-58 231.5 284 50.7
HanXRQChr10g0306531 Helianthus annuus HOM05D003996 ORTHO05D004665 1.5e-58 231.1 198 60.1
A05p12660 Brassica napus HOM05D003996 ORTHO05D004665 4.8e-57 226.1 316 44.3
Nn1g07292 Nelumbo nucifera HOM05D003996 ORTHO05D004665 4.8e-57 226.1 278 48.2
BraA05t20204Z Brassica rapa HOM05D003996 ORTHO05D004665 1.1e-56 224.9 317 43.8
ECA234G3864 Erigeron canadensis HOM05D003996 ORTHO05D004665 1.8e-56 224.2 197 59.9
Lsat_1_v5_gn_9_105800 Lactuca sativa HOM05D003996 ORTHO05D004665 6.9e-56 222.2 215 58.6
Os02g0771800 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 6.9e-56 222.2 204 57.8
SGA_v2.0_scaffold70G23382 Striga asiatica HOM05D003996 ORTHO05D004665 1.5e-55 221.1 194 59.8
Lj1C780G17 Lonicera japonica HOM05D003996 ORTHO05D004665 5.0e-54 216.1 236 51.7
Haze_12770 Corylus avellana HOM05D003996 ORTHO05D004665 1.1e-53 214.9 235 54.0
BolC4t23207H Brassica oleracea HOM05D003996 ORTHO05D004665 3.2e-53 213.4 326 42.3
SalBow7G2067 Salvia bowleyana HOM05D003996 ORTHO05D004665 9.4e-53 211.8 247 49.4
Manes.13G066300 Manihot esculenta HOM05D003996 ORTHO05D004665 1.3e-49 201.4 235 51.5
CSS0033567 Camellia sinensis var. sinensis HOM05D003996 ORTHO05D004665 6.3e-49 199.1 239 51.9
Actinidia10801 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.4e-48 198.0 237 50.6
DCAR_023146 Daucus carota HOM05D003996 ORTHO05D004665 1.4e-48 198.0 278 41.7
Oeu010926.4 Olea europaea HOM05D003996 ORTHO05D004665 7.7e-47 192.2 214 52.8
HPP92_010852 Vanilla planifolia HOM05D003996 ORTHO05D004665 6.5e-46 189.1 169 62.1
CDE07G0144 Ceratophyllum demersum HOM05D003996 ORTHO05D004665 4.0e-43 179.9 207 49.8
BcaNung06410 Brassica carinata HOM05D003996 ORTHO05D004665 5.7e-42 176.0 290 40.0
Sc05g0002040 Simmondsia chinensis HOM05D003996 ORTHO05D004665 2.4e-40 170.6 226 42.9
BraA03t11105Z Brassica rapa HOM05D003996 ORTHO05D004665 5.3e-40 169.5 278 40.6
Sed0016081 Sechium edule HOM05D003996 ORTHO05D004665 9.1e-40 168.7 155 57.4
SEGI_14118 Sequoiadendron giganteum HOM05D003996 ORTHO05D004665 3.2e-37 160.2 194 49.0
AUR62001107 Chenopodium quinoa HOM05D003996 ORTHO05D004665 9.4e-37 158.7 197 45.7
GSVIVG01003286001 Vitis vinifera HOM05D003996 ORTHO05D004665 3.6e-36 156.8 184 47.8
AUR62008931 Chenopodium quinoa HOM05D003996 ORTHO05D004665 3.4e-34 150.2 217 42.4
CANSAT01G0074 Cannabis sativa HOM05D003996 ORTHO05D004665 5.7e-34 149.4 234 40.6
Duzib133G0500 Durio zibethinus HOM05D003996 ORTHO05D004665 1.4e-32 144.8 318 37.4
Hund18404 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.2e-31 141.7 194 46.4
EL10Ac7g17863 Beta vulgaris HOM05D003996 ORTHO05D004665 1.6e-31 141.4 183 44.3
Actinidia03596 Actinidia chinensis HOM05D003996 ORTHO05D004665 1.5e-29 134.8 275 34.5
Mapoly0071s0059 Marchantia polymorpha HOM05D003996 ORTHO05D004665 1.9e-29 134.4 200 46.0
CANSAT01G3237 Cannabis sativa HOM05D003996 ORTHO05D004665 2.8e-28 130.6 234 36.8
Thecc.01G223400 Theobroma cacao HOM05D003996 ORTHO05D004665 2.3e-27 127.5 359 29.8
Pp3c17_9940 Physcomitrium patens HOM05D003996 ORTHO05D004665 8.8e-27 125.6 260 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1061 Anthoceros agrestis HOM05D003996 ORTHO05D004665 2.6e-26 124.0 182 44.5
Pp3c9_1750 Physcomitrium patens HOM05D003996 ORTHO05D004665 1.6e-23 114.8 181 40.9
CiPaw.04G110700 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.3e-21 106.7 62 80.6
C09p40870 Brassica napus HOM05D003996 ORTHO05D004665 4.7e-20 103.2 70 68.6
CBR_g29855 Chara braunii HOM05D003996 ORTHO05D004665 2.3e-19 100.9 173 36.4
SMO361G0133 Selaginella moellendorffii HOM05D003996 ORTHO05D004665 4.0e-19 100.1 168 39.9
Manes.13G046600 Manihot esculenta HOM05D003996 ORTHO05D004665 1.2e-18 98.6 81 56.8
Zm00001eb297890 Zea mays HOM05D003996 ORTHO05D004665 3.4e-18 97.1 143 39.9
Ah.08g214450 Amaranthus hybridus HOM05D003996 ORTHO05D004665 9.8e-18 95.5 183 36.6
Hund15378 Selenicereus undatus HOM05D003996 ORTHO05D004665 1.3e-17 95.1 109 52.3
CiPaw.03G155400 Carya illinoinensis HOM05D003996 ORTHO05D004665 9.2e-16 89.0 69 65.2
unitig_26.g9924 Utricularia gibba HOM05D003996 ORTHO05D004665 9.2e-16 89.0 137 39.4
COL.COLO4_21871 Corchorus olitorius HOM05D003996 ORTHO05D004665 2.3e-14 84.3 74 60.8
BcaB02g10511 Brassica carinata HOM05D003996 ORTHO05D004665 6.6e-14 82.8 59 67.8
unitig_26.g9925 Utricularia gibba HOM05D003996 ORTHO05D004665 3.6e-12 77.0 52 69.2
Sc06g0009640 Simmondsia chinensis HOM05D003996 ORTHO05D004665 6.2e-12 76.3 66 57.6
CiPaw.04G110600 Carya illinoinensis HOM05D003996 ORTHO05D004665 4.0e-11 73.6 50 68.0
Os05g0597400 Oryza sativa ssp. japonica HOM05D003996 ORTHO05D004665 1.6e-07 61.6 54 50.0
BcaC09g50171 Brassica carinata HOM05D003996 ORTHO05D092235 2.7e-07 60.8 48 60.4


User provided reference genes

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