Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc132.15 Carica papaya HOM05D007498 ORTHO05D009384 5.6e-87 324.3 172 100.0
QL08p030918 Quercus lobata HOM05D007498 ORTHO05D009384 8.7e-56 220.7 167 72.5
Dinv08726 Davidia involucrata HOM05D007498 ORTHO05D009384 1.6e-54 216.5 164 68.3
CSS0038240 Camellia sinensis var. sinensis HOM05D007498 ORTHO05D009384 9.0e-53 210.7 143 74.1
CiPaw.03G155900 Carya illinoinensis HOM05D007498 ORTHO05D009384 1.2e-52 210.3 165 69.1
Manes.12G070200 Manihot esculenta HOM05D007498 ORTHO05D009384 5.8e-52 208.0 165 67.9
Thecc.01G181300 Theobroma cacao HOM05D007498 ORTHO05D009384 5.8e-52 208.0 165 68.5
Prupe.3G211200 Prunus persica HOM05D007498 ORTHO05D009384 2.2e-51 206.1 143 72.7
MBI19_g41387_MAGBIO Magnolia biondii HOM05D007498 ORTHO05D009384 3.8e-51 205.3 164 66.5
GSVIVG01030496001 Vitis vinifera HOM05D007498 ORTHO05D009384 8.4e-51 204.1 164 64.6
TAR629G3061 Trochodendron aralioides HOM05D007498 ORTHO05D009384 1.1e-50 203.8 143 72.0
Ciclev10015493m.g Citrus clementina HOM05D007498 ORTHO05D009384 1.4e-50 203.4 145 73.1
Duzib138G1101 Durio zibethinus HOM05D007498 ORTHO05D009384 1.4e-50 203.4 162 67.9
CANSAT64G1398 Cannabis sativa HOM05D007498 ORTHO05D009384 5.4e-50 201.4 165 64.2
COL.COLO4_21864 Corchorus olitorius HOM05D007498 ORTHO05D009384 5.4e-50 201.4 165 66.7
TWI18G0826 Tripterygium wilfordii HOM05D007498 ORTHO05D009384 1.6e-49 199.9 164 64.6
Actinidia09741 Actinidia chinensis HOM05D007498 ORTHO05D009384 2.1e-49 199.5 165 62.4
Gorai.001G216600 Gossypium raimondii HOM05D007498 ORTHO05D009384 2.1e-49 199.5 165 65.5
Hma1.2p1_2381F.1_g320980 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 2.7e-49 199.1 164 64.6
MD17G1103400 Malus domestica HOM05D007498 ORTHO05D009384 3.5e-49 198.7 144 72.9
Hma1.2p1_0445F.1_g154420 Hydrangea macrophylla HOM05D007498 ORTHO05D009384 4.6e-49 198.4 164 64.0
vmacro12166 Vaccinium macrocarpon HOM05D007498 ORTHO05D009384 4.6e-49 198.4 143 69.2
Gohir.A07G187000 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.0e-48 197.2 166 64.5
Gohir.D07G193500 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.0e-48 197.2 166 64.5
Medtr3g080260 Medicago truncatula HOM05D007498 ORTHO05D009384 2.3e-48 196.1 165 62.4
FAN05G5059 Fragaria x ananassa HOM05D007498 ORTHO05D009384 3.0e-48 195.7 157 65.0
RcHm_v2.0_Chr2g0158311 Rosa chinensis HOM05D007498 ORTHO05D009384 8.7e-48 194.1 141 71.6
Sabra14G0119400 Salix brachista HOM05D007498 ORTHO05D009384 8.7e-48 194.1 141 70.9
Rhsim09G0054300 Rhododendron simsii HOM05D007498 ORTHO05D009384 1.5e-47 193.4 165 61.8
Rhsim06G0166900 Rhododendron simsii HOM05D007498 ORTHO05D009384 1.9e-47 193.0 165 61.8
Actinidia13735 Actinidia chinensis HOM05D007498 ORTHO05D009384 3.3e-47 192.2 165 61.2
MD09G1113300 Malus domestica HOM05D007498 ORTHO05D009384 9.6e-47 190.7 141 70.9
FvH4_6g42420 Fragaria vesca HOM05D007498 ORTHO05D009384 1.3e-46 190.3 157 64.3
Sc21g0001170 Simmondsia chinensis HOM05D007498 ORTHO05D009384 1.3e-46 190.3 143 69.2
Gohir.A07G083200 Gossypium hirsutum HOM05D007498 ORTHO05D009384 1.6e-46 189.9 143 69.9
Gorai.001G095600 Gossypium raimondii HOM05D007498 ORTHO05D009384 2.1e-46 189.5 143 69.9
Aqoxy1G04193 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 6.2e-46 188.0 167 61.7
Peaxi162Scf00100g01524 Petunia axillaris HOM05D007498 ORTHO05D009384 6.2e-46 188.0 143 67.1
Gohir.D07G089300 Gossypium hirsutum HOM05D007498 ORTHO05D009384 2.4e-45 186.0 144 69.4
Phvul.006G012811 Phaseolus vulgaris HOM05D007498 ORTHO05D009384 2.4e-45 186.0 165 60.6
Sopen05g026100 Solanum pennellii HOM05D007498 ORTHO05D009384 4.0e-45 185.3 142 65.5
Lsat_1_v5_gn_7_95281 Lactuca sativa HOM05D007498 ORTHO05D009384 6.9e-45 184.5 143 64.3
TPR.G34497 Trifolium pratense HOM05D007498 ORTHO05D009384 6.9e-45 184.5 165 59.4
Solyc05g042050.4 Solanum lycopersicum HOM05D007498 ORTHO05D009384 9.0e-45 184.1 142 64.8
Nn1g03383 Nelumbo nucifera HOM05D007498 ORTHO05D009384 2.6e-44 182.6 159 61.0
Nitab4.5_0006063g0010 Nicotiana tabacum HOM05D007498 ORTHO05D009384 5.8e-44 181.4 143 65.7
Cc05_g03070 Coffea canephora HOM05D007498 ORTHO05D009384 9.9e-44 180.6 162 59.3
PSO541G2474 Papaver somniferum HOM05D007498 ORTHO05D009384 9.9e-44 180.6 143 66.4
Eucgr.A01096 Eucalyptus grandis HOM05D007498 ORTHO05D009384 6.4e-43 177.9 163 59.5
HanXRQChr12g0373631 Helianthus annuus HOM05D007498 ORTHO05D009384 6.4e-43 177.9 143 60.1
Lsat_1_v5_gn_5_123880 Lactuca sativa HOM05D007498 ORTHO05D009384 8.4e-43 177.6 145 57.9
Lj6g0022389 Lotus japonicus HOM05D007498 ORTHO05D009384 2.4e-42 176.0 163 56.4
AL3G43270 Arabidopsis lyrata HOM05D007498 ORTHO05D009384 2.1e-41 172.9 149 61.7
THA.LOC104815344 Tarenaya hassleriana HOM05D007498 ORTHO05D009384 2.7e-41 172.6 144 64.6
Sp3g24210 Schrenkiella parvula HOM05D007498 ORTHO05D009384 7.9e-41 171.0 147 64.6
AT2G05755 Arabidopsis thaliana HOM05D007498 ORTHO05D009384 1.3e-40 170.2 149 61.7
PSO675G1300 Papaver somniferum HOM05D007498 ORTHO05D009384 1.1e-39 167.2 172 55.8
Nitab4.5_0000019g0370 Nicotiana tabacum HOM05D007498 ORTHO05D009384 1.5e-39 166.8 142 64.1
CsaV3_6G037690 Cucumis sativus L. HOM05D007498 ORTHO05D009384 1.9e-39 166.4 165 58.2
PGR042G1731 Punica granatum HOM05D007498 ORTHO05D009384 1.9e-39 166.4 162 56.2
CARHR103340 Cardamine hirsuta HOM05D007498 ORTHO05D009384 3.3e-39 165.6 146 61.0
A03p44690 Brassica napus HOM05D007498 ORTHO05D009384 7.4e-39 164.5 145 63.4
Carub.0003s2696 Capsella rubella HOM05D007498 ORTHO05D009384 9.6e-39 164.1 145 60.7
Lj1A780G53 Lonicera japonica HOM05D007498 ORTHO05D009384 9.6e-39 164.1 166 53.0
Aa31LG8G11370 Aethionema arabicum HOM05D007498 ORTHO05D009384 1.6e-38 163.3 156 59.6
BcaB08g34508 Brassica carinata HOM05D007498 ORTHO05D009384 1.6e-38 163.3 145 62.1
BcaC01g03153 Brassica carinata HOM05D007498 ORTHO05D009384 1.6e-38 163.3 145 63.4
C03p55520 Brassica napus HOM05D007498 ORTHO05D009384 1.6e-38 163.3 145 62.8
Sed0020195 Sechium edule HOM05D007498 ORTHO05D009384 4.8e-38 161.8 143 61.5
BraA03t13603Z Brassica rapa HOM05D007498 ORTHO05D009384 5.8e-36 154.8 158 57.6
ATR0059G023 Amborella trichopoda HOM05D007498 ORTHO05D009384 7.6e-36 154.5 165 51.5
Thhalv10002583m.g Eutrema salsugineum HOM05D007498 ORTHO05D009384 7.6e-36 154.5 140 61.4
BolC3t17828H Brassica oleracea HOM05D000228 ORTHO05D001122 1.0e-35 154.1 158 57.6
MELO3C014431.2 Cucumis melo HOM05D007498 ORTHO05D009384 4.6e-33 145.2 203 46.3
Atru.chr6.3249 Acer truncatum HOM05D007498 ORTHO05D009384 1.5e-28 130.2 103 65.0
SEGI_23048 Sequoiadendron giganteum HOM05D007498 ORTHO05D009384 1.2e-25 120.6 161 41.0
Ca_16281_v3 Cicer arietinum L. HOM05D007498 ORTHO05D009384 6.1e-25 118.2 165 45.5
Aqoxy1G02941 Aquilegia oxysepala HOM05D007498 ORTHO05D009384 6.7e-24 114.8 97 57.7
ClCG07G002420 Citrullus lanatus HOM05D007498 ORTHO05D009384 6.7e-24 114.8 95 65.3
CDE07G0657 Ceratophyllum demersum HOM05D000323 ORTHO05D009384 9.7e-23 110.9 100 61.0
FAN14G0249 Fragaria x ananassa HOM05D007498 ORTHO05D001133 2.8e-22 109.4 110 58.2
AagrBONN_evm.TU.Sc2ySwM_344.4295 Anthoceros agrestis HOM05D007498 ORTHO05D009384 5.1e-16 88.6 143 35.0
VMungo0540G1885 Vigna mungo HOM05D007498 ORTHO05D009384 6.7e-16 88.2 66 66.7
Mapoly0005s0243 Marchantia polymorpha HOM05D007498 ORTHO05D009384 3.4e-12 75.9 150 32.7
FAN09G2551 Fragaria x ananassa HOM05D007498 ORTHO05D009384 5.0e-11 72.0 69 50.7
SMO146G0054 Selaginella moellendorffii HOM05D007498 ORTHO05D009384 1.4e-08 63.9 154 29.9
Pp3c17_21590 Physcomitrium patens HOM05D007498 ORTHO05D009384 5.2e-08 62.0 124 29.8
DCAR_019260 Daucus carota HOM05D007498 ORTHO05D001133 5.7e-07 58.5 54 53.7


User provided reference genes

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