Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc131.35 Carica papaya HOM05D004845 ORTHO05D005957 0.0e+00 2018.4 1159 100.0
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 4.3e-284 981.9 1153 59.3
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 5.3e-282 974.9 1182 56.8
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-281 973.8 1151 57.2
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 1.4e-269 933.7 1154 58.3
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 1.3e-264 917.1 1152 57.6
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 1.6e-262 910.2 1151 56.2
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 1.4e-258 897.1 1167 55.4
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 8.0e-254 881.3 1119 55.5
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 9.7e-252 874.4 1122 55.2
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 4.8e-251 872.1 1171 56.9
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.1e-250 870.9 1169 54.0
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 5.9e-249 865.1 1163 53.7
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.3e-248 864.0 1119 54.9
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.2e-244 850.9 1150 53.7
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 4.4e-244 849.0 1167 53.0
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 3.8e-240 835.9 1159 51.9
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 9.8e-236 821.2 1166 52.1
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 2.8e-235 819.7 1150 53.0
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 2.7e-233 813.1 1152 52.7
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 2.7e-225 786.6 1195 51.0
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 4.7e-222 775.8 1162 49.5
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 6.8e-221 771.9 1161 50.4
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 6.8e-221 771.9 1160 50.6
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 4.4e-220 769.2 1166 50.3
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 6.4e-219 765.4 1165 50.0
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.7e-217 760.0 1164 49.7
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 1.3e-216 757.7 1159 50.2
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.3e-216 756.9 1168 49.5
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 1.1e-215 754.6 1198 49.0
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 4.4e-212 742.7 1169 48.5
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 1.3e-211 741.1 1165 49.4
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 6.4e-211 738.8 1166 49.4
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 4.1e-210 736.1 1161 49.2
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 2.3e-208 730.3 1164 48.6
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 6.6e-208 728.8 1176 49.8
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 2.6e-204 716.8 1146 45.7
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 4.4e-204 716.1 1127 47.8
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 7.6e-204 715.3 1156 44.1
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 3.7e-203 713.0 1157 48.0
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 8.4e-203 711.8 1193 48.4
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 5.4e-202 709.1 1166 49.4
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 5.6e-199 699.1 1164 47.6
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 9.6e-199 698.4 1306 43.8
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 1.7e-195 687.6 1162 48.0
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 5.4e-194 682.6 1157 46.3
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.2e-193 681.4 1181 46.8
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 7.8e-193 678.7 1167 46.5
Actinidia32134 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.9e-191 674.1 1119 47.4
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 9.6e-191 671.8 1151 45.9
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 2.1e-185 654.1 1159 44.7
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 6.6e-184 649.0 1159 44.5
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 1.0e-176 625.2 1169 45.1
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 1.3e-176 624.8 1169 45.0
Oeu052809.1 Olea europaea HOM05D004845 ORTHO05D005957 2.3e-176 624.0 1155 44.7
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 1.3e-171 608.2 1175 44.5
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 2.9e-171 607.1 1167 44.6
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.2e-169 601.7 1175 44.1
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 1.8e-168 597.8 1167 44.0
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.8e-166 590.5 1182 43.7
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 1.1e-165 588.6 1160 42.9
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 7.6e-164 582.4 1181 43.3
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.3e-163 581.6 1167 44.0
Eucgr.J02886 Eucalyptus grandis HOM05D004845 ORTHO05D005957 1.2e-161 575.1 1076 46.0
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 2.1e-161 574.3 1162 44.5
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 5.7e-159 566.2 1174 43.4
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 2.2e-158 564.3 1158 45.0
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.1e-157 562.0 1162 44.0
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 3.1e-157 560.5 1162 44.1
Psat4g193760 Pisum sativum HOM05D004845 ORTHO05D005957 1.3e-155 555.1 1096 43.1
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 1.8e-152 544.7 1167 43.6
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 4.1e-149 533.5 1147 41.1
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 3.4e-148 530.4 1134 42.8
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 4.2e-146 523.5 1166 43.1
CSS0001379 Camellia sinensis var. sinensis HOM05D004845 ORTHO05D005957 8.2e-142 509.2 911 48.8
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.6e-137 495.0 1103 43.2
Lj5C49T6 Lonicera japonica HOM05D004845 ORTHO05D005957 1.0e-136 492.3 1064 38.7
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 3.3e-135 487.3 1180 42.6
Haze_15920 Corylus avellana HOM05D004845 ORTHO05D005957 2.2e-134 484.6 588 52.2
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 3.7e-134 483.8 1192 41.4
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 8.8e-128 462.6 1064 39.8
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 2.8e-126 457.6 1152 38.1
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 8.3e-126 456.1 1150 38.7
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 8.3e-126 456.1 1150 38.7
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 8.3e-126 456.1 1150 38.7
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.4e-125 455.3 1152 38.0
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 7.0e-125 453.0 1152 39.6
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 3.8e-123 447.2 1168 38.7
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 1.5e-122 445.3 1158 38.4
CARHR097190 Cardamine hirsuta HOM05D004845 ORTHO05D005957 9.5e-122 442.6 1100 41.3
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 8.0e-121 439.5 1155 37.9
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 6.8e-120 436.4 1188 34.9
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 3.4e-119 434.1 1122 36.5
Actinidia21742 Actinidia chinensis HOM05D004845 ORTHO05D005957 9.8e-119 432.6 960 37.2
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 4.9e-118 430.3 1203 34.7
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 2.4e-117 427.9 1124 38.6
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 4.7e-113 413.7 1176 38.0
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 3.6e-97 360.9 1126 38.3
Medtr8g015610 Medicago truncatula HOM05D004845 ORTHO05D005957 7.5e-95 353.2 1102 31.8
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 6.0e-92 343.6 1183 31.7
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.5e-90 339.0 1166 36.3
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 2.8e-89 334.7 1146 33.9
MBI01_g37799_MAGBIO Magnolia biondii HOM05D004845 ORTHO05D005957 3.1e-88 331.3 745 36.6
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 5.2e-88 330.5 1144 34.4
Atru.chr1.3631 Acer truncatum HOM05D001194 ORTHO05D005909 1.9e-82 312.0 324 57.1
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 1.6e-76 292.4 1148 33.5
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 2.8e-73 281.6 1190 32.8
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 4.0e-72 277.7 1197 32.3
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 1.9e-69 268.9 1158 32.7
Lalb_Chr14g0372881 Lupinus albus HOM05D004845 ORTHO05D005957 2.1e-68 265.4 1060 32.5
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 2.4e-64 251.9 1178 31.8
Lalb_Chr15g0087461 Lupinus albus HOM05D004845 ORTHO05D005957 5.3e-64 250.8 1114 29.2
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 7.1e-61 240.4 286 51.0
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 2.7e-60 238.4 294 51.0
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.9e-56 223.8 184 68.5
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 1.7e-54 219.2 994 31.9
Duzib192G0218 Durio zibethinus HOM05D004845 ORTHO05D005957 3.2e-53 214.9 213 59.6
Haze_15921 Corylus avellana HOM05D004845 ORTHO05D005957 2.3e-43 182.2 219 53.4
CDE10G0326 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 1.0e-35 156.8 637 28.1
Mapoly0021s0057 Marchantia polymorpha HOM05D004845 ORTHO05D005957 1.1e-29 136.7 299 36.8
Os03g0187100 Oryza sativa ssp. japonica HOM05D004845 ORTHO05D005957 2.5e-29 135.6 647 29.4
C01p42950 Brassica napus HOM05D004845 ORTHO05D005957 6.7e-27 127.5 147 49.7
Pp3c12_1570 Physcomitrium patens HOM05D004845 ORTHO05D005957 7.4e-26 124.0 303 36.0
unitig_749.g14049 Utricularia gibba HOM05D004845 ORTHO05D005957 9.7e-26 123.6 124 51.6
Ca_23296_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 2.2e-25 122.5 243 37.9
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 2.2e-25 122.5 76 78.9
HPP92_028293 Vanilla planifolia HOM05D004845 ORTHO05D005957 3.1e-24 118.6 207 38.6
Ca_23298_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 1.9e-21 109.4 198 40.4
SMO334G0114 Selaginella moellendorffii HOM05D004845 ORTHO05D005957 1.9e-21 109.4 362 29.3
SHI11167 Sapria himalayana HOM05D004845 ORTHO05D005957 1.6e-20 106.3 219 36.1
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 2.7e-20 105.5 59 89.8
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 3.1e-16 92.0 70 67.1
SHI11164 Sapria himalayana HOM05D004845 ORTHO05D003034 1.0e-14 87.0 44 88.6
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 2.5e-13 82.4 838 29.1
AagrBONN_evm.TU.Sc2ySwM_344.5033 Anthoceros agrestis HOM05D004845 ORTHO05D005957 1.2e-12 80.1 1281 25.7
Medtr1g021875 Medicago truncatula HOM05D004845 ORTHO05D005957 1.2e-12 80.1 59 69.5
CBR_g20995 Chara braunii HOM05D004845 ORTHO05D005957 1.5e-10 73.2 103 39.8
CBR_g20996 Chara braunii HOM05D004845 ORTHO05D005957 4.8e-09 68.2 81 48.1
SHI11166 Sapria himalayana HOM05D004845 ORTHO05D005957 1.6e-07 63.2 48 68.8
BolC1t04238H Brassica oleracea HOM05D004845 ORTHO05D005957 2.0e-07 62.8 55 60.0
BolC1t04239H Brassica oleracea HOM05D004845 ORTHO05D005957 3.5e-07 62.0 149 36.9
Zm00001eb424050 Zea mays HOM05D002942 ORTHO05D003270 2.3e-06 59.3 31 80.6


User provided reference genes

Program Settings