Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc131.32 Carica papaya HOM05D004845 ORTHO05D005957 4.3e-79 298.1 173 100.0
MELO3C013040.2 Cucumis melo HOM05D004845 ORTHO05D005957 2.3e-24 116.3 131 55.0
PGR102G0505 Punica granatum HOM05D004845 ORTHO05D005957 4.0e-24 115.5 124 62.1
CsaV3_3G044010 Cucumis sativus L. HOM05D004845 ORTHO05D005957 5.2e-24 115.2 131 55.0
GSVIVG01016889001 Vitis vinifera HOM05D004845 ORTHO05D005957 5.2e-24 115.2 130 58.5
Thecc.06G108000 Theobroma cacao HOM05D004845 ORTHO05D005957 2.0e-23 113.2 127 72.4
ClCG07G013620 Citrullus lanatus HOM05D004845 ORTHO05D005957 3.3e-23 112.5 131 55.0
Dinv30397 Davidia involucrata HOM05D004845 ORTHO05D005957 4.4e-23 112.1 132 59.8
COL.COLO4_30609 Corchorus olitorius HOM05D004845 ORTHO05D005957 9.7e-23 110.9 130 71.5
QL05p015844 Quercus lobata HOM05D004845 ORTHO05D005957 3.7e-22 109.0 133 57.9
RcHm_v2.0_Chr2g0142521 Rosa chinensis HOM05D004845 ORTHO05D005957 3.7e-22 109.0 132 53.0
Actinidia32135 Actinidia chinensis HOM05D004845 ORTHO05D005957 6.3e-22 108.2 130 56.9
Sed0014548 Sechium edule HOM05D004845 ORTHO05D005957 8.2e-22 107.8 131 52.7
CiPaw.02G142000 Carya illinoinensis HOM05D004845 ORTHO05D005957 1.1e-21 107.5 134 53.0
Duzib160G0801 Durio zibethinus HOM05D004845 ORTHO05D005957 1.4e-21 107.1 129 69.8
Aa31LG8G7990 Aethionema arabicum HOM05D004845 ORTHO05D005957 1.8e-21 106.7 128 65.6
Dinv37932 Davidia involucrata HOM05D004845 ORTHO05D005957 1.8e-21 106.7 125 57.6
FAN14G1946 Fragaria x ananassa HOM05D004845 ORTHO05D005957 1.8e-21 106.7 127 53.5
Gohir.A05G133700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.8e-21 106.7 128 69.5
Gohir.D05G135700 Gossypium hirsutum HOM05D004845 ORTHO05D005957 1.8e-21 106.7 128 69.5
Gorai.009G139700 Gossypium raimondii HOM05D004845 ORTHO05D005957 1.8e-21 106.7 128 69.5
THA.LOC104810560 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.4e-21 106.3 124 54.8
FvH4_6g32970 Fragaria vesca HOM05D004845 ORTHO05D005957 3.1e-21 105.9 127 53.5
TPR.G8763 Trifolium pratense HOM05D004845 ORTHO05D005957 4.1e-21 105.5 125 57.6
TAR629G3185 Trochodendron aralioides HOM05D004845 ORTHO05D005957 7.0e-21 104.8 129 66.7
TWI31G1049 Tripterygium wilfordii HOM05D004845 ORTHO05D005957 9.1e-21 104.4 126 65.9
Duzib235G0635 Durio zibethinus HOM05D004845 ORTHO05D005957 1.2e-20 104.0 128 60.2
arahy.Tifrunner.gnm1.ann1.7F0ZFP Arachis hypogaea HOM05D004845 ORTHO05D005957 2.0e-20 103.2 126 53.2
Lalb_Chr04g0263091 Lupinus albus HOM05D004845 ORTHO05D005957 2.0e-20 103.2 127 55.1
Glyma.07G012400 Glycine max HOM05D004845 ORTHO05D005957 3.5e-20 102.4 126 54.0
Sed0023831 Sechium edule HOM05D004845 ORTHO05D005957 1.0e-19 100.9 131 63.4
vmacro18819 Vaccinium macrocarpon HOM05D004845 ORTHO05D005957 1.0e-19 100.9 125 49.6
Glyma.08G196100 Glycine max HOM05D004845 ORTHO05D005957 1.7e-19 100.1 126 52.4
Manes.11G028800 Manihot esculenta HOM05D004845 ORTHO05D005957 2.2e-19 99.8 128 60.2
THA.LOC104817934 Tarenaya hassleriana HOM05D004845 ORTHO05D005957 2.2e-19 99.8 125 48.8
FAN02G0586 Fragaria x ananassa HOM05D004845 ORTHO05D005957 2.9e-19 99.4 127 51.2
Phvul.010G141800 Phaseolus vulgaris HOM05D004845 ORTHO05D005957 2.9e-19 99.4 126 53.2
Potri.003G033100 Populus trichocarpa HOM05D004845 ORTHO05D005957 3.8e-19 99.0 97 60.8
Medtr8g015620 Medicago truncatula HOM05D004845 ORTHO05D005957 5.0e-19 98.6 126 54.8
Lj3g0020048 Lotus japonicus HOM05D004845 ORTHO05D005957 6.5e-19 98.2 128 49.2
FAN09G4600 Fragaria x ananassa HOM05D004845 ORTHO05D005957 8.5e-19 97.8 127 50.4
arahy.Tifrunner.gnm1.ann1.JSQ5P9 Arachis hypogaea HOM05D004845 ORTHO05D005957 1.1e-18 97.4 126 54.0
MD17G1176700 Malus domestica HOM05D004845 ORTHO05D005957 1.5e-18 97.1 93 61.3
Carub.0003s2130 Capsella rubella HOM05D004845 ORTHO05D005957 2.5e-18 96.3 93 57.0
MD09G1196000 Malus domestica HOM05D004845 ORTHO05D005957 4.2e-18 95.5 88 63.6
Ca_23299_v3 Cicer arietinum L. HOM05D004845 ORTHO05D005957 7.2e-18 94.7 126 55.6
Lj3g0006882 Lotus japonicus HOM05D004845 ORTHO05D005957 2.1e-17 93.2 129 50.4
MSTRG.22604 Avicennia marina HOM05D004845 ORTHO05D005957 3.6e-17 92.4 126 49.2
Manes.04G137600 Manihot esculenta HOM05D004845 ORTHO05D005957 4.7e-17 92.0 58 77.6
Sabra03G0019000 Salix brachista HOM05D004845 ORTHO05D005957 1.4e-16 90.5 94 56.4
Sopen03g040190 Solanum pennellii HOM05D004845 ORTHO05D005957 1.4e-16 90.5 147 49.0
Cfa003605 Carpinus fangiana HOM05D004845 ORTHO05D005957 1.8e-16 90.1 76 64.5
VMungo0331G0639 Vigna mungo HOM05D004845 ORTHO05D005957 1.8e-16 90.1 126 53.2
Peaxi162Scf00038g01322 Petunia axillaris HOM05D004845 ORTHO05D005957 2.3e-16 89.7 131 56.5
Nn1g08771 Nelumbo nucifera HOM05D004845 ORTHO05D005957 4.0e-16 89.0 86 64.0
PGSC0003DMG400002508 Solanum tuberosum HOM05D004845 ORTHO05D005957 8.8e-16 87.8 129 52.7
Migut.I01002 Erythranthe guttata HOM05D004845 ORTHO05D005957 1.2e-15 87.4 129 50.4
Oeu026736.3 Olea europaea HOM05D004845 ORTHO05D005957 1.5e-15 87.0 128 50.8
Solyc03g121380.3 Solanum lycopersicum HOM05D004845 ORTHO05D005957 1.5e-15 87.0 154 45.5
ECA232G1750 Erigeron canadensis HOM05D004845 ORTHO05D005957 2.0e-15 86.7 128 46.9
CANSAT56G3316 Cannabis sativa HOM05D004845 ORTHO05D005957 1.3e-14 84.0 130 60.8
Sp3g19330 Schrenkiella parvula HOM05D004845 ORTHO05D005957 1.7e-14 83.6 126 52.4
Hund07666 Selenicereus undatus HOM05D004845 ORTHO05D005957 1.7e-14 83.6 125 60.8
BcaB06g26218 Brassica carinata HOM05D004845 ORTHO05D005957 2.2e-14 83.2 131 42.7
SGA_v2.0_scaffold71G23747 Striga asiatica HOM05D004845 ORTHO05D005957 2.2e-14 83.2 128 46.1
C05p42240 Brassica napus HOM05D004845 ORTHO05D005957 2.8e-14 82.8 129 51.9
AT3G21290 Arabidopsis thaliana HOM05D004845 ORTHO05D005957 4.8e-14 82.0 55 70.9
Atru.chr1.3636 Acer truncatum HOM05D004845 ORTHO05D005957 6.3e-14 81.6 58 70.7
BraA05t21625Z Brassica rapa HOM05D004845 ORTHO05D005957 6.3e-14 81.6 58 69.0
CDE10G0876 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 6.3e-14 81.6 126 45.2
Actinidia21743 Actinidia chinensis HOM05D004845 ORTHO05D005957 1.1e-13 80.9 110 59.1
DCAR_026375 Daucus carota HOM05D004845 ORTHO05D005957 1.1e-13 80.9 58 74.1
Nitab4.5_0004848g0010 Nicotiana tabacum HOM05D004845 ORTHO05D005957 1.1e-13 80.9 131 51.1
A05p27330 Brassica napus HOM05D004845 ORTHO05D005957 1.4e-13 80.5 57 68.4
Lsat_1_v5_gn_4_95940 Lactuca sativa HOM05D004845 ORTHO05D005957 1.4e-13 80.5 127 49.6
Prupe.3G052500 Prunus persica HOM05D004845 ORTHO05D005957 1.4e-13 80.5 127 51.2
AL3G35330 Arabidopsis lyrata HOM05D004845 ORTHO05D005957 1.8e-13 80.1 130 47.7
SHI11163 Sapria himalayana HOM05D004845 ORTHO05D005957 4.1e-13 79.0 75 58.7
CDE10G0270 Ceratophyllum demersum HOM05D004845 ORTHO05D005957 5.4e-13 78.6 125 42.4
Cc04_g02180 Coffea canephora HOM05D004845 ORTHO05D005957 5.4e-13 78.6 138 47.1
BcaC05g28184 Brassica carinata HOM05D004845 ORTHO05D005957 7.0e-13 78.2 129 51.2
BolC5t32952H Brassica oleracea HOM05D004845 ORTHO05D005957 7.0e-13 78.2 129 51.2
FAN05G2503 Fragaria x ananassa HOM05D004845 ORTHO05D005957 9.1e-13 77.8 107 50.5
HanXRQChr09g0276331 Helianthus annuus HOM05D004845 ORTHO05D005957 9.1e-13 77.8 123 41.5
HanXRQChr05g0140141 Helianthus annuus HOM05D004845 ORTHO05D005957 1.2e-12 77.4 125 44.8
Sc12g0009860 Simmondsia chinensis HOM05D004845 ORTHO05D005957 1.2e-12 77.4 127 45.7
HPP92_028291 Vanilla planifolia HOM05D004845 ORTHO05D005957 1.2e-12 77.4 98 52.0
Thhalv10019924m.g Eutrema salsugineum HOM05D004845 ORTHO05D005957 1.6e-12 77.0 135 54.1
ATR0730G184 Amborella trichopoda HOM05D004845 ORTHO05D005957 2.0e-12 76.6 81 55.6
SGA_v2.0_scaffold45G16992 Striga asiatica HOM05D004845 ORTHO05D005957 3.5e-12 75.9 128 43.8
PSO170G6909 Papaver somniferum HOM05D004845 ORTHO05D005957 1.0e-11 74.3 89 53.9
Aqoxy7G00060 Aquilegia oxysepala HOM05D004845 ORTHO05D005957 1.7e-11 73.6 91 53.8
Ciclev10024729m.g Citrus clementina HOM05D004845 ORTHO05D005957 2.2e-11 73.2 44 79.5
EL10Ac9g21102 Beta vulgaris HOM05D004845 ORTHO05D005957 5.0e-11 72.0 61 62.3
Lalb_Chr14g0372871 Lupinus albus HOM05D004845 ORTHO05D005957 6.5e-11 71.6 125 41.6
unitig_749.g14048 Utricularia gibba HOM05D004845 ORTHO05D005957 8.5e-11 71.2 114 45.6
Rhsim08G0231600 Rhododendron simsii HOM05D004845 ORTHO05D005957 1.1e-10 70.9 61 63.9
DCAR_007608 Daucus carota HOM05D004845 ORTHO05D005957 1.5e-10 70.5 92 52.2
Ah.01g016900 Amaranthus hybridus HOM05D004845 ORTHO05D005957 3.2e-10 69.3 56 64.3
AUR62023919 Chenopodium quinoa HOM05D004845 ORTHO05D005957 2.1e-09 66.6 56 62.5
AUR62038325 Chenopodium quinoa HOM05D004845 ORTHO05D005957 4.7e-09 65.5 56 62.5
BcaC09g49066 Brassica carinata HOM05D004845 ORTHO05D005957 6.1e-09 65.1 107 59.8
Zm00001eb006560 Zea mays HOM05D004845 ORTHO05D005957 1.8e-08 63.5 96 49.0
BolC1t04240H Brassica oleracea HOM05D004845 ORTHO05D005957 5.2e-08 62.0 54 66.7
C01p42960 Brassica napus HOM05D004845 ORTHO05D005957 6.8e-08 61.6 38 78.9
Zm00001eb401540 Zea mays HOM05D004845 ORTHO05D005957 8.8e-08 61.2 95 48.4
CAN.G1668.10 Capsicum annuum HOM05D004845 ORTHO05D005957 2.6e-07 59.7 56 57.1
Cpa.g.sc108.17 Carica papaya HOM05D001165 ORTHO05D000004 5.7e-07 58.5 46 47.8
SEGI_05846 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 9.8e-07 57.8 56 51.8
SEGI_07021 Sequoiadendron giganteum HOM05D004845 ORTHO05D005957 9.8e-07 57.8 56 51.8
Cpa.g.sc129.32 Carica papaya HOM05D002219 ORTHO05D002713 6.3e-06 55.1 43 48.8


User provided reference genes

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