Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 2.2e-76 288.9 145 100.0
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 2.7e-26 122.5 149 49.0
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 6.2e-23 111.3 144 51.4
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 8.2e-23 110.9 145 49.0
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 3.1e-22 109.0 146 47.9
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 5.3e-22 108.2 146 47.3
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 4.5e-21 105.1 156 46.2
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 5.8e-21 104.8 145 45.5
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 2.2e-20 102.8 146 43.2
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 4.9e-20 101.7 147 44.2
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 6.5e-20 101.3 133 45.9
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 8.4e-20 100.9 147 40.8
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.1e-19 100.5 149 44.3
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 1.4e-19 100.1 123 50.4
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 2.5e-19 99.4 133 48.9
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 2.5e-19 99.4 151 41.7
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 3.2e-19 99.0 155 47.1
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 3.2e-19 99.0 127 45.7
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 4.2e-19 98.6 135 43.0
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 7.1e-19 97.8 143 42.0
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 1.6e-18 96.7 131 48.1
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 2.1e-18 96.3 144 45.8
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.7e-18 95.9 143 40.6
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.7e-18 95.9 143 40.6
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 6.0e-18 94.7 115 51.3
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 7.9e-18 94.4 139 48.2
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 7.9e-18 94.4 121 46.3
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 1.3e-17 93.6 143 41.3
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 1.3e-17 93.6 133 45.9
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 1.8e-17 93.2 146 39.7
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 1.8e-17 93.2 122 47.5
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 1.8e-17 93.2 127 45.7
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 2.3e-17 92.8 137 46.0
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 3.0e-17 92.4 143 40.6
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 1.9e-16 89.7 119 47.9
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 1.9e-16 89.7 141 41.8
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 1.9e-16 89.7 134 43.3
ClCG09G019420 Citrullus lanatus HOM05D007296 ORTHO05D009201 3.3e-16 89.0 126 46.0
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 5.7e-16 88.2 121 46.3
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 1.6e-15 86.7 130 40.8
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 1.6e-15 86.7 107 44.9
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 2.2e-15 86.3 127 43.3
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 2.2e-15 86.3 127 44.1
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 2.8e-15 85.9 110 50.0
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 3.7e-15 85.5 125 44.8
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 3.7e-15 85.5 143 40.6
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 6.3e-15 84.7 127 42.5
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 6.3e-15 84.7 86 55.8
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 8.2e-15 84.3 102 51.0
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 8.2e-15 84.3 114 50.9
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 8.2e-15 84.3 122 46.7
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 1.1e-14 84.0 102 51.0
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 1.1e-14 84.0 91 56.0
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 1.8e-14 83.2 103 52.4
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 3.1e-14 82.4 102 50.0
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 3.1e-14 82.4 102 50.0
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 4.1e-14 82.0 127 41.7
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 4.1e-14 82.0 107 45.8
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 5.3e-14 81.6 109 50.5
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 6.9e-14 81.3 109 50.5
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 6.9e-14 81.3 119 44.5
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 6.9e-14 81.3 141 37.6
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 2.0e-13 79.7 76 59.2
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 2.0e-13 79.7 117 42.7
ATR0199G042 Amborella trichopoda HOM05D007296 ORTHO05D009201 2.6e-13 79.3 116 43.1
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 2.6e-13 79.3 149 38.9
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 2.6e-13 79.3 78 59.0
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 3.4e-13 79.0 121 38.0
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 5.9e-13 78.2 103 43.7
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.0e-12 77.4 127 37.8
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 1.7e-12 76.6 143 37.8
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 5.0e-12 75.1 75 54.7
CsaV3_5G026960 Cucumis sativus L. HOM05D007296 ORTHO05D009201 6.5e-12 74.7 106 45.3
MELO3C021597.2 Cucumis melo HOM05D007296 ORTHO05D009201 8.5e-12 74.3 115 45.2
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 8.5e-12 74.3 78 55.1
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 1.1e-11 73.9 126 41.3
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 1.1e-11 73.9 116 44.8
Thecc.03G117800 Theobroma cacao HOM05D007296 ORTHO05D009201 2.5e-11 72.8 133 39.8
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 4.2e-11 72.0 140 36.4
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 1.2e-10 70.5 95 44.2
Ciclev10022926m.g Citrus clementina HOM05D007296 ORTHO05D009201 4.6e-10 68.6 121 38.8
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 6.1e-10 68.2 117 39.3
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 7.9e-10 67.8 123 39.8
Gohir.A07G055400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 7.9e-10 67.8 120 37.5
COL.COLO4_30221 Corchorus olitorius HOM05D007296 ORTHO05D009201 1.0e-09 67.4 128 38.3
Glyma.19G051600 Glycine max HOM05D007296 ORTHO05D009201 1.0e-09 67.4 105 41.0
Gorai.006G035000 Gossypium raimondii HOM05D007296 ORTHO05D009201 1.4e-09 67.0 149 35.6
Lalb_Chr07g0183081 Lupinus albus HOM05D007296 ORTHO05D009201 1.4e-09 67.0 144 31.9
Sopen02g038130 Solanum pennellii HOM05D007296 ORTHO05D009201 1.4e-09 67.0 97 43.3
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.8e-09 66.6 121 35.5
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 1.8e-09 66.6 127 37.0
Migut.K01416 Erythranthe guttata HOM05D007296 ORTHO05D009201 1.8e-09 66.6 135 37.0
Ca_30679_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.3e-09 66.2 112 34.8
Glyma.05G115500 Glycine max HOM05D007296 ORTHO05D009201 2.3e-09 66.2 105 40.0
Gohir.D07G059700 Gossypium hirsutum HOM05D007296 ORTHO05D009201 3.0e-09 65.9 120 36.7
Gorai.001G063200 Gossypium raimondii HOM05D007296 ORTHO05D009201 3.0e-09 65.9 120 36.7
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 3.9e-09 65.5 118 40.7
Sabra15G0109100 Salix brachista HOM05D000631 ORTHO05D000524 5.1e-09 65.1 138 34.1
Lj4g0005296 Lotus japonicus HOM05D007296 ORTHO05D009201 8.8e-09 64.3 143 34.3
Manes.14G057736 Manihot esculenta HOM05D007296 ORTHO05D009201 8.8e-09 64.3 141 34.0
Os01g0938400 Oryza sativa ssp. japonica HOM05D024678 ORTHO05D025976 8.8e-09 64.3 59 49.2
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 2.5e-08 62.8 66 57.6
Phvul.004G061700 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 7.4e-08 61.2 105 38.1
Solyc02g093525.1 Solanum lycopersicum HOM05D007296 ORTHO05D009201 1.3e-07 60.5 84 42.9
Glyma.05G042900 Glycine max HOM05D007296 ORTHO05D009201 1.7e-07 60.1 113 35.4
QL10p006090 Quercus lobata HOM05D007296 ORTHO05D009201 2.2e-07 59.7 130 35.4
Actinidia33329 Actinidia chinensis HOM05D007296 ORTHO05D009201 1.8e-06 56.6 88 45.5
Zm00001eb141720 Zea mays HOM05D024678 ORTHO05D025976 5.3e-06 55.1 53 45.3
Zm00001eb363300 Zea mays HOM05D024678 ORTHO05D025976 5.3e-06 55.1 51 49.0


User provided reference genes

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