Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 6.6e-75 283.9 137 100.0
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 7.6e-63 243.8 137 83.2
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 7.1e-61 237.3 137 79.6
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 9.3e-61 236.9 137 78.8
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 1.6e-60 236.1 137 80.3
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 2.7e-60 235.3 134 84.3
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 6.7e-59 230.7 137 78.1
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 1.5e-58 229.6 134 81.3
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 4.3e-58 228.0 137 77.4
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 9.6e-58 226.9 134 81.3
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 1.3e-57 226.5 137 78.1
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 4.8e-57 224.6 133 79.7
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 4.8e-57 224.6 133 78.9
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 4.8e-57 224.6 133 78.9
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 3.1e-56 221.9 137 73.7
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 5.3e-56 221.1 137 76.6
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 9.0e-56 220.3 137 77.4
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 2.0e-55 219.2 136 76.5
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 3.4e-55 218.4 137 76.6
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 4.5e-55 218.0 137 70.1
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 1.0e-54 216.9 137 72.3
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 4.9e-54 214.5 132 76.5
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 6.5e-54 214.2 137 72.3
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 8.4e-54 213.8 131 75.6
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 2.5e-53 212.2 137 70.8
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 3.2e-53 211.8 146 68.5
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 5.5e-53 211.1 127 74.8
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 5.5e-53 211.1 137 73.0
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 9.3e-53 210.3 137 72.3
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 9.3e-53 210.3 137 73.0
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.2e-52 209.9 139 71.9
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.2e-52 209.9 139 71.9
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 2.1e-52 209.1 137 70.8
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 3.5e-52 208.4 135 77.8
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 3.5e-52 208.4 135 75.6
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 3.5e-52 208.4 137 70.8
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 6.0e-52 207.6 136 72.8
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 6.0e-52 207.6 135 77.0
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 6.0e-52 207.6 127 80.3
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 1.0e-51 206.8 132 72.0
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 1.0e-51 206.8 131 74.0
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 1.3e-51 206.5 132 78.0
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 1.8e-51 206.1 134 71.6
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 1.8e-51 206.1 129 75.2
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 1.8e-51 206.1 135 75.6
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 1.8e-51 206.1 135 76.3
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 1.8e-51 206.1 130 74.6
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 3.0e-51 205.3 136 75.7
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 2.5e-50 202.2 130 73.8
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 3.3e-50 201.8 132 76.5
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 3.3e-50 201.8 134 67.9
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.6e-49 199.5 119 75.6
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 1.6e-49 199.5 134 71.6
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 1.6e-49 199.5 135 68.9
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 2.2e-49 199.1 135 74.1
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 1.1e-48 196.8 122 74.6
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 3.1e-48 195.3 126 73.8
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 5.3e-48 194.5 135 68.1
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 5.3e-48 194.5 125 71.2
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 6.9e-48 194.1 133 69.2
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 9.0e-48 193.7 122 72.1
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 1.2e-47 193.4 126 70.6
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 1.5e-47 193.0 132 68.2
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 1.5e-47 193.0 122 72.1
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 1.5e-47 193.0 122 72.1
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 2.0e-47 192.6 135 68.1
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 2.0e-47 192.6 135 68.1
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 3.4e-47 191.8 122 71.3
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 5.9e-47 191.0 171 57.3
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 1.0e-46 190.3 122 73.0
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 1.7e-46 189.5 109 79.8
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 2.9e-46 188.7 130 66.9
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 1.4e-45 186.4 186 52.2
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 2.5e-45 185.7 127 67.7
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 5.5e-45 184.5 107 78.5
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 7.2e-45 184.1 130 63.8
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 7.2e-45 184.1 107 78.5
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.2e-44 183.3 106 77.4
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 1.6e-44 183.0 107 75.7
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 2.7e-44 182.2 114 77.2
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 6.1e-44 181.0 123 68.3
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 1.8e-43 179.5 133 66.9
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 5.1e-43 177.9 107 74.8
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 2.5e-42 175.6 130 67.7
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 3.3e-42 175.3 107 72.9
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 5.7e-42 174.5 132 61.4
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 9.7e-42 173.7 107 74.8
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 6.3e-41 171.0 107 73.8
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 3.7e-33 145.2 85 84.7
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 1.4e-32 143.3 145 49.0
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 1.4e-32 143.3 95 69.5
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 5.3e-32 141.4 89 76.4
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 9.1e-32 140.6 96 76.0
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 5.9e-31 137.9 87 75.9
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 2.2e-30 136.0 87 75.9
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 2.2e-30 136.0 87 75.9
Dinv25701 Davidia involucrata HOM05D006998 ORTHO05D008733 3.8e-30 135.2 72 81.9
DCAR_011285 Daucus carota HOM05D006998 ORTHO05D008733 8.5e-30 134.0 138 50.0
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.9e-29 132.9 88 75.0
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 3.2e-29 132.1 103 56.3
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 1.2e-28 130.2 94 64.9
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 2.1e-28 129.4 104 55.8
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 3.0e-27 125.6 85 77.6
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 1.1e-26 123.6 91 68.1
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 7.4e-26 120.9 91 64.8
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 1.1e-24 117.1 81 70.4
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 5.3e-24 114.8 86 66.3
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 3.5e-23 112.1 98 52.0
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 6.8e-19 97.8 66 72.7
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 3.4e-18 95.5 84 60.7
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 4.4e-18 95.1 66 69.7
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 9.7e-18 94.0 67 67.2
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 6.3e-17 91.3 69 68.1
Sed0022519 Sechium edule HOM05D006998 ORTHO05D008733 7.0e-16 87.8 49 73.5
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 2.0e-15 86.3 90 51.1
Cre09.g413300 Chlamydomonas reinhardtii HOM05D006998 ORTHO05D008733 3.2e-13 79.0 60 58.3
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 1.2e-12 77.0 64 59.4
BcaB01g01217 Brassica carinata HOM05D006998 ORTHO05D008733 4.7e-12 75.1 72 51.4


User provided reference genes

Program Settings