Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1894.4 1011 100.0
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1648.3 1151 77.9
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1637.1 1151 77.7
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1634.0 1159 76.6
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1634.0 1151 77.9
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1634.0 1151 76.5
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1633.2 1158 77.4
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1631.7 1151 77.8
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1630.2 1169 76.6
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1629.0 1157 77.4
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1628.2 1151 76.8
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1627.5 1151 75.1
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1625.1 1153 76.6
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1625.1 1151 75.8
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1624.8 1152 77.1
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1623.6 1170 76.3
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1620.9 1171 76.2
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1620.5 1152 75.5
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1620.1 1159 77.0
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1619.0 1151 76.5
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1619.0 1152 76.6
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1618.6 1152 77.2
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1617.4 1152 76.1
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1616.7 1154 76.4
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1614.7 1151 74.5
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1611.3 1154 76.5
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1610.9 1153 76.7
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1609.7 1154 76.9
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1609.0 1151 75.9
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1609.0 1151 75.2
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1608.2 1155 76.7
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1608.2 1151 75.2
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1607.8 1161 76.4
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1607.0 1151 77.1
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1605.9 1161 76.3
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1604.0 1194 74.3
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1603.6 1157 76.5
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1603.2 1152 76.4
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1602.8 1162 76.2
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1602.4 1153 75.7
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1602.0 1162 76.2
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1600.9 1155 75.5
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1600.5 1158 76.2
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1600.1 1161 76.1
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1599.7 1148 74.7
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1599.7 1148 74.7
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1598.9 1154 76.3
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1598.6 1151 75.8
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1597.8 1156 76.6
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1597.8 1156 76.6
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1597.8 1158 76.4
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1597.4 1152 76.2
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1597.0 1162 75.2
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1595.1 1148 74.7
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1594.3 1151 75.2
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1593.9 1159 75.4
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1592.4 1173 75.4
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1592.0 1154 76.1
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1589.3 1156 76.0
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1589.3 1148 74.7
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1588.2 1154 75.6
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1587.0 1156 75.8
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1585.5 1156 75.7
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1584.7 1169 74.4
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1584.3 1166 74.8
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1580.8 1091 76.5
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1580.5 1196 72.2
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1578.5 1091 76.9
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1577.4 1153 74.3
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1575.5 1148 74.2
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1575.1 1163 74.4
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1572.0 1164 73.6
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1570.4 1189 73.3
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1564.3 1152 74.0
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1562.0 1156 73.9
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1562.0 1155 74.5
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1553.9 1151 75.4
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1543.9 1093 73.6
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1541.2 1192 72.1
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1541.2 1162 73.1
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1536.2 1150 72.9
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1536.2 1148 73.2
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1528.8 1089 73.6
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1525.8 1152 73.7
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1525.4 1155 72.7
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1521.5 1152 72.1
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1520.0 1179 72.8
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1515.7 1156 73.4
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1484.2 1163 72.2
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1482.6 839 90.5
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1472.2 1156 67.7
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1466.1 1163 69.1
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1448.3 1152 67.1
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1444.1 838 87.2
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1442.2 1314 63.3
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1424.1 1156 67.2
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1398.3 1162 66.4
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1387.5 1157 65.4
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1360.9 799 87.1
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1289.6 1153 61.1
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1282.7 1152 60.1
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1273.8 797 80.9
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1264.2 982 71.2
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1226.1 927 72.8
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1190.3 1159 56.5
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1176.4 1158 55.5
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1139.0 1160 54.1
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1129.0 1174 53.7
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1124.8 695 83.5
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1109.4 1159 53.1
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.9e-288 996.1 576 89.4
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 2.9e-276 955.7 546 90.1
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.1e-274 949.5 599 83.3
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 3.7e-255 885.6 773 63.1
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 8.8e-249 864.4 1106 42.7
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 1.4e-246 857.1 918 51.6
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.2e-232 810.8 643 69.8
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 7.5e-216 755.0 464 80.2
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 1.1e-201 708.0 647 63.8
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 2.1e-186 657.1 476 72.5
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 3.9e-180 636.3 577 63.8
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.8e-156 557.8 519 58.6
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.8e-156 557.8 357 82.4
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 8.8e-116 422.5 378 58.2
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 3.4e-107 394.0 467 54.6
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.5e-102 378.6 395 54.9
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 4.1e-89 334.0 195 85.1
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.1e-65 256.1 168 85.7
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 5.6e-54 217.2 171 78.4
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 5.8e-51 207.2 162 67.9
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 2.7e-48 198.4 143 74.1
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 7.6e-43 180.3 117 82.9
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 2.3e-39 168.7 104 85.6
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 1.1e-38 166.4 110 80.9
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 5.9e-35 154.1 87 85.1
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.5e-33 148.7 96 83.3
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.7e-18 99.4 110 50.9
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 5.0e-18 97.8 82 61.0
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 5.5e-17 94.4 83 67.5
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.3e-15 89.0 51 80.4
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.0e-15 88.6 51 78.4
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 8.8e-15 87.0 44 86.4
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.1e-14 86.7 51 78.4
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 4.2e-09 68.2 90 70.0
Manes.10G036656 Manihot esculenta HOM05D005231 ORTHO05D006387 3.0e-07 62.0 57 56.1


User provided reference genes

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